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Aliases & Descriptions for DLC1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases ARHGAP7 1 , 2 , 3 DLC-1 1 Dlc-1 3 FLJ21120 2 HP 1 , 2 KIAA1723 3 OTTHUMP00000116050 2 STARD12 1 , 2 , 3 StARD12 3 p122-RhoGAP 1 , 2
Descriptions Deleted in liver cancer 1 protein 3 HP protein 3 Rho-GTPase-activating protein 7 2 Rho-type GTPase-activating protein 7 3 START domain containing protein 12 2 START domain-containing protein 12 3 StAR-related lipid transfer (START) domain containing 12 2 StAR-related lipid transfer protein 12 2 , 3 deleted in liver cancer 1 2 deleted in liver cancer 1 variant 2 2
Search outside databases for aliases for DLC1 genePrevious GC identifers: GC08M012717 GC08M012901 GC08M012951
Summaries for DLC1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for DLC1 : This gene is deleted in the primary tumor of hepatocellular carcinoma. It maps to 8p22-p21.3, aregion frequently deleted in solid tumors. It is suggested that this gene is a candidate tumorsuppressor gene for human liver cancer, as well as for prostate, lung, colorectal, and breastcancers. Alternative splicing at this locus results in several transcript variants encodingdifferent isoforms. [provided by RefSeq] UniProtKB/Swiss-Prot: RHG07_HUMAN, Q96QB1 Function : Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 invivo and induces morphological changes and detachment through cytoskeletal reorganization (Bysimilarity)
Gene Wiki entry for DLC1
Genomic Location for DLC1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DLC1 gene Entrez Gene cytogenetic band: 8p22 Ensembl cytogenetic band: 8p22 HGNC cytogenetic band: 8p22 DLC1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M012985:
(about GC identifiers )
Start:
12,985,243 bp from pter
End:
13,416,766 bp from pter
Size:
431,524 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000008.9 NT_030737.9 Proteins for DLC1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
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Abcam ,
Biochemical Assays by
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R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: RHG07_HUMAN, Q96QB1 (See
protein sequence )Recommended Name: Rho GTPase-activating protein 7 Size : 1091 amino acids; 122827 Da
Subcellular location : Cytoplasm (Potential)
Sequence caution : Sequence=BAB21814.1; Type=Miscellaneous discrepancy; Note=Chimera. Sequence fromposition 1 to 13 is due to a chimera;
PDB structure from and Proteopedia : 2DKY (3D)
 2GYT (3D)
 
Secondary accessions : O14868 O43199 Q9C0E0
Post-translational modifications:
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_006085.2 NP_079043.2 NP_872584.1 ENSEMBL proteins: ENSP00000321034 ENSP00000351797 ENSP00000276297 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 5 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for DLC1: Assays for DLC1:
Protein
Domains/ Families for DLC1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q96QB1 ProtoNet protein and cluster: Q96QB1
4 Blocks protein families : IPB000198 RhoGAP domain IPB001660 Sterile alpha motif SAM IPB002913 Lipid-binding START IPB011510 Sterile alpha motif homology 2 UniProtKB/Swiss-Prot: RHG07_HUMAN, Q96QB1 Similarity : Contains 1 Rho-GAP domainSimilarity : Contains 1 SAM (sterile alpha motif) domainSimilarity : Contains 1 START domain
Gene Function for DLC1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
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Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
Q-PCR Products
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siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_182643 Applied Biosystems Silencer ® siRNAs for DLC1 Sigma-Aldrich siRNA for DLC1 Sigma-Aldrich shRNA for DLC1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_006094                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_006094                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_006094  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_182643 UniProtKB/Swiss-Prot: RHG07_HUMAN, Q96QB1 Function : Functions as a GTPase-activating protein specific for Rho and an activator of PLCD1 invivo and induces morphological changes and detachment through cytoskeletal reorganization (Bysimilarity)
Genatlas biochemistry entry for DLC1 :gene deleted in liver cancer 1,ubiquitously expressed in normal tissues,homolog to rat RhoGAP (seeTSG8D),not a target of 8pLOH in colorectal or ovarian tumors
7 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Dlc1) :4 Gene Ontology (GO) molecular function terms (links to tree view) :
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Pathways & Interactions for DLC1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for DLC1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for DLC1 --5/15 Gene Ontology (GO) biological process terms (links to tree view) (see all 15
):
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Drugs & Compounds for DLC1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for DLC1
Transcripts for DLC1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_182643 Sigma-Aldrich siRNA for DLC1 Sigma-Aldrich shRNA for DLC1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_006094 NM_024767 NM_182643
REFSEQ mRNAs for DLC1 gene (3 alternative transcripts): NM_006094.3 NM_024767.2 NM_182643.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_006094 NM_024767 NM_182643
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_006094                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_006094                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_006094  
Additional cDNA sequence: AB051510.1 AF026219.1 AF035119.1 AK023128.1 AK024773.1 AK025544.1 AK025733.1 AK225098.1 AK289734.1 AK291682.1 AK299049.1 AL117604.1 BC049842.1 BC054511.1 BC095415.1 DQ092382.1 DQ092383.1 EU159199.1 EU159200.1
19 DOTS entries : DT.92430630 DT.120650456 DT.100785019 DT.100785020 DT.65284749 DT.100785021 DT.100785015 DT.100691378 DT.120650387 DT.120650450 DT.120650484 DT.120650423 DT.120650427 DT.120650453 DT.120650503 DT.92430627 DT.121366457 DT.95278357 DT.99971511
24/312 AceView cDNA sequences (see all 312
):AI493763 T36042 BC049842 CA444625 BU754387 BU788981 AA485481 BQ709121 BQ003744 BX474620 BU626636 AA485324 AI569298 AI139143 AU119481 AI350839 Z40259 AA664020 AA669172 BM702719 AI537946 BF724250 NM_182643 AI334360
highest scoring ESTs for DLC1 :AA418047 AA418218 AA446780 AB051510 AF035119 AI334360 AI829459 AK024773 AL708548 BC049842
Unigene Cluster for DLC1: Deleted in liver cancer 1 Hs.134296 [show with all ESTs ] Unigene Representative Sequence: NM_182643 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for DLC1 (see all 7
) ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12 ^ 13a · 13b · 13c ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ SP1 :                                   -                   SP2 :                                                     SP3 :                                                     SP4 :                   -                                   SP5 :                 -                                    
About this scheme ECgene alternative splicing isoforms for DLC1 3 Ensembl transcripts including schematic representations : ENST00000316609
ENST00000358919
ENST00000276297
Expression for DLC1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DLC1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DLC1 1 / 2 / 3
15 probe-sets matching DLC1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: TTGCTGGAGASOURCE GeneReport for Unigene cluster: Hs.134296 Expression variation in blood from EXPOLDB for DLC1
UniProtKB/Swiss-Prot: RHG07_HUMAN, Q96QB1 Tissue specificity : Highest level of expression in the spleen, with rather lower levels inprostate, testis, ovary, small intestine and colon, but none in the thymus
Orthologs for DLC1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DLC1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for DLC1 ENSEMBL Gene Tree for DLC1 Paralogs for DLC1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for DLC1 gene STARD13 2 STARD8 2 RP13-102H20.1 2
SNPs/Variants for DLC1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DLC1 (up to first 250kb)
Disorders & Mutations for DLC1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604258
4 Novoseek disease relationships for DLC1 gene
About this table Genetic Association Database: DLC1 Human Genome Epidemiology Navigator: DLC1 (4 documents)
Medical News for DLC1 (Possibly Related Articles in
Doctor's Guide )
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--
Publications for DLC1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/53 PubMed articles for DLC1 gene (see all 53
): Cloning, characterization, and chromosomal localization of a gene frequently deleted in human liver cancer (DLC-1) homologous to rat RhoGAP. (PubMed id 9605766) 1, 2, 3, 4 Yuan B.Z....Popescu N.C. (1998) Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11214970) 2, 3, 4 Nagase T....Ohara O. (2000) Evaluation of DLC1 as a prostate cancer susceptibility gene: mutation screen and association study. (PubMed id 12873722) 3, 6 Zheng S.L....Xu J. (2003) Sequence variants of DLC1 in colorectal and ovarian tumours. (PubMed id 10649492) 3, 4 Wilson P.J.... Chenevix-Trench G. (2000) Transcriptional silencing of the DLC-1 tumor suppressor gene by epigenetic mechanism in gastric cancer cells. (PubMed id 12813468) 1, 3 Kim T.Y....Bang Y.J. (2003) Genetic and epigenetic alterations of DLC-1 gene in hepatocellular carcinoma. (PubMed id 14633684) 1, 3 Wong C.M....Ng I.O. (2003) Restoration of DLC-1 gene expression induces apoptosis and inhibits both cell growth and tumorigenicity in human hepatocellular carcinoma cells. (PubMed id 14647417) 1, 3 Zhou X....Popescu N.C. (2004) Tumor-specific methylation of the 8p22 tumor suppressor gene DLC1 is an epigenetic biomarker for Hodgkin, nasal NK/T-cell and other types of lymphomas. (PubMed id 17965626) 1, 3 Ying J....Tao Q. (2007) DLC-1, a GTPase-activating protein for Rho, is associated with cell proliferation, morphology, and migration in human hepatocellular carcinoma. (PubMed id 17292327) 1, 3 Kim T.Y....Bang Y.J. (2007) DNA variants of DLC-1, a candidate tumor suppressor gene in human hepatocellular carcinoma. (PubMed id 12792785) 1, 3 Park S.W....Popescu N.C. (2003)
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Genome Databases showing DLC1
(According to
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing DLC1
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Specialized Databases showing DLC1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for DLC1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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