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Aliases & Descriptions for DKK3
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases Dickkopf-3 3 Dkk-3 3 REIC 1 , 2 , 3 RIG 2 hDkk-3 3
Descriptions RIG-like 5-6 2 RIG-like 7-1 2 dickkopf (Xenopus laevis) homolog 3 1 dickkopf 3 2 dickkopf homolog 3 2 dickkopf homolog 3 (Xenopus laevis) 2 regulated in glioma 2
Search outside databases for aliases for DKK3 genePrevious GC identifers: GC11M013255 GC11M012554 GC11M012023 GC11M011948
Summaries for DKK3 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for DKK3 : This gene encodes a protein that is a member of the dickkopf family. The secreted protein containstwo cysteine rich regions and is involved in embryonic development through its interactions withthe Wnt signaling pathway. The expression of this gene is decreased in a variety of cancer celllines and it may function as a tumor suppressor gene. Alternative splicing results in multipletranscript variants encoding the same protein. [provided by RefSeq] UniProtKB/Swiss-Prot: DKK3_HUMAN, Q9UBP4 Function : Inhibitor of Wnt signaling pathway (Potential)
Gene Wiki entry for DKK3
Genomic Location for DKK3
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
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Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DKK3 gene Entrez Gene cytogenetic band: 11p15.2 Ensembl cytogenetic band: 11p15.3 HGNC cytogenetic band: 11p15.3 DKK3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M011941:
(about GC identifiers )
Start:
11,941,119 bp from pter
End:
11,987,493 bp from pter
Size:
46,375 bases
Orientation:
minus strand
RefSeq DNA sequence: NC_000011.8 NT_009237.17 Proteins for DKK3
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
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Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DKK3_HUMAN, Q9UBP4 (See
protein sequence )Recommended Name: Dickkopf-related protein 3 precursor Size : 350 amino acids; 38291 Da
Subcellular location : Secreted
Secondary accessions : Q9ULB7
Post-translational modifications:
N-glycosylated1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (3 alternative transcripts):
NP_001018067.1 NP_037385.2 NP_056965.3 ENSEMBL proteins: ENSP00000314730 ENSP00000314910 ENSP00000379762 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DKK3 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for DKK3: Assays for DKK3:
Protein
Domains/ Families for DKK3(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q9UBP4 ProtoNet protein and cluster: Q9UBP4
1 Blocks protein family : IPB006796 Dickkopf UniProtKB/Swiss-Prot: DKK3_HUMAN, Q9UBP4 Similarity : Belongs to the dickkopf family
Gene Function for DKK3
(According to MGI Jun 06 2009, UniProtKB ,
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Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_013253 Applied Biosystems Silencer ® siRNAs for DKK3 Sigma-Aldrich siRNA for DKK3 Sigma-Aldrich shRNA for DKK3 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001018057                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001018057                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001018057  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_001018057 UniProtKB/Swiss-Prot: DKK3_HUMAN, Q9UBP4 Function : Inhibitor of Wnt signaling pathway (Potential)
3 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Dkk3) : Pathways & Interactions for DKK3
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for DKK3 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for DKK3 5/13 Interacting proteins for DKK3 (ENSP00000314910 3 Q9UBP4 2 ) via UniProtKB, MINT, and/or STRING (see all 13
)About this table 3 Gene Ontology (GO) biological process terms (links to tree view) :
GO ID Qualified GO term Evidence PubMed IDs GO:0007275 multicellular organismal development
IEA -- GO:0009653 anatomical structure morphogenesis
TAS 10570958 GO:0030178 negative regulation of Wnt receptor signaling pathway
IEA --
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Drugs & Compounds for DKK3 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Transcripts for DKK3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 3 ): NM_013253 Sigma-Aldrich siRNA for DKK3 Sigma-Aldrich shRNA for DKK3 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001018057 NM_013253 NM_015881
REFSEQ mRNAs for DKK3 gene (3 alternative transcripts): NM_001018057.1 NM_013253.4 NM_015881.5
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001018057 NM_013253 NM_015881
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 3 ): NM_001018057                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 3 ): NM_001018057                                  untagged cDNA clones in CMV expression vector (see all 4 ): NM_001018057  
Additional cDNA sequence: AB033421.1 AB034203.1 AB057591.1 AF052161.1 AF177396.1 AF400439.1 AK092979.1 AK098756.1 AK225156.1 AK289897.1 AK295441.1 AK295539.1 AY358378.1 AY587550.1 BC007660.2 CR607734.1 U32331.1
22 DOTS entries : DT.418939 DT.100816741 DT.91767127 DT.40299804 DT.100816739 DT.95156379 DT.97765245 DT.120734819 DT.410173 DT.120734800 DT.120734838 DT.95156382 DT.91767118 DT.120734840 DT.100816735 DT.100819188 DT.102824245 DT.120734797 DT.120734859 DT.121627162 DT.101968117 DT.92466268
24/451 AceView cDNA sequences (see all 451
):BQ690088 BF724383 AA668448 BQ687864 BM511891 BM704826 BQ689566 BU157606 AA844276 AK092979 BU190780 CF131317 BU157365 CD624670 BQ897122 AA652462 NM_013253 BU163369 BM693391 BQ719036 BU185935 AI199529 BU683488 AA226842
highest scoring ESTs for DKK3 :AB057591 AY358378 BE910066 BG701274 BG702538 BI550000 BI553362 BI596318 BQ670374 BQ876718
Unigene Cluster for DKK3: Dickkopf homolog 3 (Xenopus laevis) Hs.292156 [show with all ESTs ] Unigene Representative Sequence: NM_015881 GeneLoc Exon Structure 5/17 Alternative Splicing Database (ASD) splice patterns (SP) for DKK3 (see all 17
) ExUns: 1 ^ 2a · 2b ^ 3a · 3b · 3c · 3d ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c · 6d · 6e ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13a · SP1 :       -   -   -   -   -   -               -   -   -     -   -   -   -         SP2 :               -   -               -   -   -     -   -   -   -         SP3 :             -   -   -               -   -   -     -   -   -   -         SP4 :                               -   -   -     -   -   -   -         SP5 :                                           -   -        
ExUns: 13b · 13c ^ 14a · 14b · 14c · 14d · 14e ^ 15a · 15b ^ 16 SP1 :                     SP2 :                     SP3 :                     SP4 :                     SP5 :                    
About this scheme ECgene alternative splicing isoforms for DKK3 3 Ensembl transcripts including schematic representations : ENST00000326914
ENST00000326932
ENST00000396505
Expression for DKK3
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DKK3 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DKK3 1 / 2 / 3
8 probe-sets matching DKK3 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: CTTTCTTTGASOURCE GeneReport for Unigene cluster: Hs.292156 UniProtKB/Swiss-Prot: DKK3_HUMAN, Q9UBP4 Tissue specificity : Highest expression in heart, brain, and spinal cord
Orthologs for DKK3
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DKK3 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for DKK3 ENSEMBL Gene Tree for DKK3 Paralogs for DKK3 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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SNPs/Variants for DKK3 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DKK3 (up to first 250kb)
Disorders & Mutations for DKK3
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
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OMIM: 605416 5 Novoseek disease relationships for DKK3 gene
About this table Human Gene Mutation Database : DKK3 Human Genome Epidemiology Navigator: DKK3 (1 document)
Medical News for DKK3 (Possibly Related Articles in
Doctor's Guide )
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Publications for DKK3 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/46 PubMed articles for DKK3 gene (see all 46
): Functional and structural diversity of the human Dickkopf gene family. (PubMed id 10570958) 2, 3, 4 Krupnik V.E.... McCarthy S.A. (1999) Reduced expression of the REIC/Dkk-3 gene by promoter- hypermethylation in human tumor cells. (PubMed id 11814687) 1, 3, 4 Kobayashi K.... Shimizu K. (2002) A REIC gene shows down-regulation in human immortalized cells and human tumor-derived cell lines. (PubMed id 10652205) 1, 3, 4 Tsuji T.... Namba M. (2000) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 3, 4 Zhang Z. and Henzel W.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3, 4 Clark H.F....Gray A. (2003) Wnt signalling in human breast cancer: expression of the putative Wnt inhibitor Dickkopf-3 (DKK3) is frequently suppressed by promoter hypermethylation in mammary tumours. (PubMed id 18826564) 1, 3 Veeck J....Dahl E. (2008) Promoter methylation of the Wnt/beta-catenin signaling antagonist Dkk-3 is associated with poor survival in gastric cancer. (PubMed id 19051296) 1, 3 Yu J....Sung J.J. (2009) Downregulation of Dkk3 activates beta-catenin/TCF-4 signaling in lung cancer. (PubMed id 18048388) 1, 3 Yue W....Zhang L. (2008) Dysregulation of Dkk-3 expression in benign and malignant prostatic tissue. (PubMed id 18247400) 1, 3 Zenzmaier C....Berger P. (2008)
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Genome Databases showing DKK3
(According to
Entrez Gene ,
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
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Other Databases showing DKK3
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Specialized Databases showing DKK3 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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