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Aliases & Descriptions for DKK1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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User Feedback Aliases & Descriptions dickkopf homolog 1 (Xenopus laevis)1 2 dickkopf related protein-12 SK1 2 3 dickkopf-1 like2 DKK-11 2 dickkopf-related protein 12 hDkk-12 3 Dkk-13 dickkopf (Xenopus laevis) homolog 11 Dickkopf-13
Search outside databases for aliases for DKK1 genePrevious GC identifers: GC10P052921 GC10P053966 GC10P053418 GC10P053744
Summaries for DKK1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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User Feedback Entrez Gene summary for DKK1 : This gene encodes a protein that is a member of the dickkopf family. It is a secreted protein with two cysteine rich regions and is involved in embryonic development through its inhibition of the WNT signaling pathway. Elevated levels of DKK1 in bone marrow plasma and peripheral blood is associated with the presence of osteolytic bone lesions in patients with multiple myeloma. (provided by RefSeq) UniProtKB/Swiss-Prot: DKK1_HUMAN, O94907 Function : Antagonizes canonical Wnt signaling by inhibiting LRP5/6 interaction with Wnt and by forming a ternarycomplex with the transmembrane protein KREMEN that promotes internalization of LRP5/6. DKKs play an important role in vertebrate development, where they locally inhibit Wnt regulated processes such as antero-posterior axial patterning, limb development, somitogenesis and eye formation. In the adult, Dkks are implicated in bone formation and bone disease, cancer and Alzheimer's disease Gene Wiki entry for DKK1
Genomic Views for DKK1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl (release 56) ,
Regulatory elements and Epigenetics data according to
SABiosciences )About This Section
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User Feedback Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the DKK1 gene upstream (promoter) region :AP-1 HNF-4alpha2 COUP-TF1 c-Jun c-Fos Sox9 p53 GATA-1 POU2F1 Meis-1 Epigenetics: SABiosciences Methyl-Profiler DNA Methylation qPCR Primer Assays for DKK1: MePH28378-1A Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 10q11.2 Ensembl cytogenetic band: 10q21.1 HGNC cytogenetic band: 10q11.2 DKK1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure
GeneLoc location for GC10P054074: view genomic region
(about GC identifiers )
Start:
54,074,041 bp from pter
End:
54,077,802 bp from pter
Size:
3,762 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000010.10 NT_030059.13 Proteins for DKK1 gene
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Sino Biological ,
Biochemical Assays by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 May 2010 and
Entrez Gene ,
Antibodies by
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abnova ,
OriGene ,
Novus Biologicals , and/or
Epitomics )
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User Feedback UniProtKB/Swiss-Prot: DKK1_HUMAN, O94907 (See
protein sequence )Recommended Name: Dickkopf-related protein 1 precursor Size : 266 amino acids; 28672 Da
Subunit : Interacts with LRP5 and LRP6 (By similarity)
Subcellular location : Secreted
Secondary accessions : B2RC19
REFSEQ proteins: NP_036374.1 ENSEMBL proteins: ENSP00000363081 Human Recombinant Proteins 2 Gene Ontology (GO) cellular component terms (GO ID links to tree view) :
About this table
DKK1 for ontologies About GeneDecksing Antibodies for DKK1: Millipore Mono- and Polyclonal Antibodies for the study of DKK1 Sigma-Aldrich Antibodies for DKK1 R&D Systems Antibodies for DKK1 (Dkk-1) Cell Signaling Technology (CST) Antibodies for DKK1   Monoclonal and Polyclonal Antibodies from Abnova (DKK1 ) Origene Antibodies: DKK1 Novus Biologicals Antibodies for DKK1 Browse
antibodies at Epitomics
Assays for DKK1:
Protein
Domains/ Families for DKK1 gene(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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DKK1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry O94907 ProtoNet protein and cluster: O94907
1 Blocks protein family : IPB006796 Dickkopf UniProtKB/Swiss-Prot: DKK1_HUMAN, O94907 Domain : The C-terminal cysteine-rich domain mediates interaction with LRP5 and LRP6 (By similarity)Similarity : Belongs to the dickkopf family
Gene Function for DKK1 gene
(According to MGI May 08 2010, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Millipore ,
Abnova ,
siRNAs from
Applied Biosystems ,
Sigma-Aldrich , Clones from
Millipore ,
Sigma-Aldrich ,
OriGene ,
Sino Biological ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene .)
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User Feedback UniProtKB/Swiss-Prot: DKK1_HUMAN, O94907 Function : Antagonizes canonical Wnt signaling by inhibiting LRP5/6 interaction with Wnt and by forming a ternarycomplex with the transmembrane protein KREMEN that promotes internalization of LRP5/6. DKKs play an important role in vertebrate development, where they locally inhibit Wnt regulated processes such as antero-posterior axial patterning, limb development, somitogenesis and eye formation. In the adult, Dkks are implicated in bone formation and bone disease, cancer and Alzheimer's disease
4 Gene Ontology (GO) molecular function terms (GO ID links to tree view) :
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DKK1 for ontologies About GeneDecksing Animal Models: 9 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Dkk1) :
DKK1 for phenotypes About GeneDecksing Pathways & Interactions for DKK1 gene
(Pathways according to
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
Applied Biosystems GeneAssist ,
KEGG
and/or UniProtKB ,
(map by GeneGo ),
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 May 2010 via
Entrez Gene) .
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DKK1 for pathways About GeneDecksing 2 Millipore Pathways for DKK1 4 Sigma-Aldrich "Your Favorite Gene" Pathways for DKK1 (Your Favorite Gene powered by Ingenuity) 3 GeneAssist Pathways for DKK1 1 Kegg Pathway (Kegg details for DKK1) : SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for DKK1 5/14 Interacting proteins for DKK1 (ENSP00000363081 3 O94907 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 14
) About this table 5/10 Gene Ontology (GO) biological process terms (GO ID links to tree view) (see all 10
):
GO ID Qualified GO term Evidence PubMed IDs GO:0000904 cell morphogenesis involved in differentiation
-- -- GO:0003259 cardioblast anterior-lateral migration
-- -- GO:0007275 multicellular organismal development
IEA -- GO:0007492 endoderm development
-- -- GO:0030178 negative regulation of Wnt receptor signaling pathway
IEA --
About this table
DKK1 for ontologies About GeneDecksing
Drugs & Compounds for DKK1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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DKK1 for compounds About GeneDecksing
Enzo Life Sciences drugs & compounds for DKK1
Browse Tocris compounds for DKK1 10/42 Novoseek chemical compound relationships for DKK1 gene (see all 42
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
thalidomide
5.18
7
17283219 (4), 19067746 (2), 17255354 (1)
bortezomib
4.58
5
17107351 (3), 19067746 (2)
lenalidomide
4.06
3
19067746 (2), 17255354 (1)
nemonapride
1.97
1
14985049 (1)
sphingosine
1.90
3
18420384 (1), 18341573 (1), 14522923 (1)
ru486
1.77
3
16449346 (3)
5-aza-2'deoxycytidine
1.67
2
19847810 (1), 16491118 (1)
bcl2
1.65
2
19895917 (1), 19217321 (1)
progesterone
1.64
14
16449346 (7), 19737954 (5), 17245340 (1), 12021176 (1)
zoledronic acid
1.57
2
19670154 (2)
About this table
Transcripts for DKK1 gene(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 223 Homo sapiens; Apr 2 2010) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
Millipore and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
microRNA from SABiosciences ,
Tagged/untagged cDNA clones from
OriGene ,
Primers from
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SABiosciences , Expression Assays from Applied Biosystems )About This Section
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User Feedback Assays: Applied Biosystems TaqMan® Gene Expression Assays: NM_012242 Clones: Origene GFP tagged cDNA clones in CMV expression vector: DKK1 Origene Myc/DDK tagged cDNA clones in CMV expression vector: DKK1 Origene untagged cDNA clones in CMV expression vector: DKK1
Primers: Origene genome-wide validated SYBR primer pairs: DKK1 SABiosciences RT2 qPCR Primer Assay for DKK1: PPH01752A
REFSEQ mRNAs for DKK1 gene: NM_012242.2
Additional cDNA sequence: AF127563.1 AF177394.1 AK314902.1 AY359005.1 BC001539.2 CR591322.1 CR591735.1 CR594190.1 CR594616.1 CR595444.1 CR600818.1 CR601383.1 CR603030.1 CR603553.1 CR604811.1 CR605923.1 CR610857.1 CR625465.1
6 DOTS entries : DT.215189 DT.97845178 DT.95249156 DT.100705681 DT.121258630 DT.91766563
24/215 AceView cDNA sequences (see all 215
):
BE138776 AA253446 CR601383 CR594616 CR605923 BM832800 CR625465 BM781822 CA489233 AI440184 CR603030 AI095783 AI952513 BM745250 BX102027 CB216128 AI954044 BC001539 BM759916 BG178745 BU752259 BM545035 BU170594 BE908837
highest scoring ESTs for DKK1 :AA031969 AA032060 AA035345 AA035443 AA035583 AA042806 AA088618 AA115249 AA115337 AA137219 Unigene Cluster for DKK1:
Dickkopf homolog 1 (Xenopus laevis) Hs.40499 [show with all ESTs ] Unigene Representative Sequence: CR594190 GeneLoc Exon Structure 4 Ensembl transcripts including schematic representations : ENST00000467359
ENST00000373970
ENST00000494277
ENST00000476752
Expression for DKK1 gene
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 223 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems ,
Primers from
OriGene and/or
SABiosciences
)
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User Feedback DKK1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DKK1 1 / 2 / 3
3 probe-sets matching DKK1 gene
Affymetrix probe-set
Array
GeneAnnot data
GeneNote data
GeneTide data
# genes
Sensitivity
Specificity
Correlation
Length
Gb_Accession
Consensus
Uniqueness
Score
Rank
35977_at2 , 3
U95-A
1
1.00
1.00
1.00
1.00
AB020315
0.20
1.00
0.72
1
204602_at2 , 3
U133-A
1
1.00
1.00
--
--
NM_012242
0.60
1.00
0.82
1
204602_at2
U133Plus2
1
1.00
1.00
--
--
--
--
--
--
--
About this table
DKK1 for expression About GeneDecksing Data from
Genenote  
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: AAAATACTAG SOURCE GeneReport for Unigene cluster: Hs.40499 Expression variation in blood from EXPOLDB for DKK1
UniProtKB/Swiss-Prot: DKK1_HUMAN, O94907 Tissue specificity : Placenta
Primers: Origene genome-wide validated SYBR primer pairs: DKK1 SABiosciences RT2 qPCR Primer Assay for DKK1: PPH01752A
Orthologs for DKK1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI May 08 2010,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DKK1 gene from 5/8 species (see all 8
)
About this table Species with no ortholog for DKK1 ENSEMBL Gene Tree for DKK1 Paralogs for DKK1 gene (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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User Feedback Paralogs for DKK1 gene DKK4 2 DKK2 2
DKK1 for paralogs About GeneDecksing
Genomic Variants for DKK1 gene (SNPs according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DKK1 (up to first 250kb)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for DKK1: --
Disorders & Mutations for DKK1 gene
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
LSDB, HGMD, GAD ,
HuGE Navigator ,
BCGD,
and/or TGDB .)
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DKK1 for disorders About GeneDecksing
OMIM: 605189 10/121 Novoseek disease relationships for DKK1 gene (see all 121
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
multiple myeloma
17.92
31
17255354 (6), 16646053 (6), 19067746 (5), 14695408 (4) (see all 11 )
bone metastases
12.72
15
17876334 (7), 18561248 (3), 18546262 (3), 18453541 (1) (see all 5 )
placental choriocarcinoma
9.61
4
17026960 (4)
tumorigenicity
8.98
9
18157634 (3), 17141200 (3), 14555616 (2), 19247449 (1)
mgus
6.41
3
16646053 (2), 19067746 (1)
osteosarcoma
5.62
10
17987039 (7), 15965110 (2), 12740383 (1)
pachydermoperiostosis
5.42
3
20042673 (3)
escc
4.93
6
19408050 (6)
medulloblastoma
4.80
6
17329407 (5), 12649343 (1)
ankylosing spondylitis
4.71
8
20039407 (8)
About this table Human Genome Epidemiology Navigator: DKK1 (8 documents)
Medical News for DKK1 gene (Possibly Related Articles in
Doctor's Guide )
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User Feedback --
Publications for DKK1 gene (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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User Feedback 10/177 PubMed articles for DKK1 gene (see all 177
): Isolation and biochemical characterization of the human Dkk-1 homologue, a novel inhibitor of mammalian Wnt signaling. (PubMed id 10383463) 1, 3 , 4 Fedi P.... Aaronson S.A. (1999) The genomic structure, chromosome location, and analysis of the human DKK1 head inducer gene as a candidate for holoprosencephaly. (PubMed id 10965128) 1, 3 , 4 Roessler E.... Muenke M. (2000) Functional and structural diversity of the human Dickkopf gene family. (PubMed id 10570958) 1, 3 , 4 Krupnik V.E.... McCarthy S.A. (1999) Signal peptide prediction based on analysis of experimentally verified cleavage sites. (PubMed id 15340161) 3 , 4 Zhang Z. and Henzel W.J. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3 , 4 Gerhard D.S....Malek J. (2004) The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309) 3 , 4 Clark H.F....Gray A. (2003) A potential role for Dkk-1 in the pathogenesis of osteosarcoma predicts novel diagnostic and treatment strategies. (PubMed id 17987039) 1, 3 Lee N....Gregory C.A. (2007) Dickkopf-1 mediated tumor suppression in human breast carcinoma cells. (PubMed id 18157634) 1, 3 Mikheev A.M....Zarbl H. (2008) Dickkopf-1 expression increases early in prostate cancer development and decreases during progression from primary tumor to metastasis. (PubMed id 18561248) 1, 3 Hall C.L....Keller E.T. (2008) Elevated expression of DKK1 is associated with cytoplasmic/nuclear beta-catenin accumulation and poor prognosis in hepatocellular carcinomas. (PubMed id 19303159) 1, 3 Yu B....Qin W. (2009)
Search for DKK1 gene
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Genome Databases showing DKK1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
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Other Databases showing DKK1 gene
(According to HUGE )
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Specialized Databases showing DKK1 gene (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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User Feedback Patent Information for DKK1 gene: Search GeneIP for patents involving DKK1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search Services for DKK1 gene (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Novus Biologicals ,Epitomics , Sigma-Aldrich , R&D Systems , SABiosciences , Millipore , Abnova , Clones available from OriGene , Sigma-Aldrich , Sino Biological , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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