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Aliases for DKFZp686K1684 Gene

Subcategory (RNA class) for DKFZp686K1684 Gene

ncRNA

Quality Score for this RNA gene is

1

Aliases for DKFZp686K1684 Gene

  • Uncharacterized LOC440034 3

External Ids for DKFZp686K1684 Gene

Previous GeneCards Identifiers for DKFZp686K1684 Gene

  • GC11P031795
  • GC11U900704
  • GC11P031839

Summaries for DKFZp686K1684 Gene

GeneCards Summary for DKFZp686K1684 Gene

DKFZp686K1684 (Uncharacterized LOC440034) is an RNA Gene, and is affiliated with the ncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DKFZp686K1684 Gene

Genomics for DKFZp686K1684 Gene

Regulatory Elements for DKFZp686K1684 Gene

Enhancers for DKFZp686K1684 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11F031814 0.6 ENCODE 0.8 -1.8 -1799 0.1 RNF2 SUZ12 CBX2 CTBP2 EZH2 DKFZp686K1684 RCN1
GH11F031815 0.2 ENCODE 0.8 -2.6 -2555 0.1 RNF2 SUZ12 CBX2 EZH2 DKFZp686K1684 RCN1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DKFZp686K1684 on UCSC Golden Path with GeneCards custom track

Promoters for DKFZp686K1684 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001767668 334 201 KLF1 MAZ SP3 SUZ12 RNF2 CBX2 SP2 ZBTB8A ZEB1 E2F1

Genomic Location for DKFZp686K1684 Gene

Chromosome:
11
Start:
31,816,566 bp from pter
End:
31,887,041 bp from pter
Size:
70,476 bases
Orientation:
Plus strand

Genomic View for DKFZp686K1684 Gene

Genes around DKFZp686K1684 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DKFZp686K1684 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DKFZp686K1684 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DKFZp686K1684 Gene

Proteins for DKFZp686K1684 Gene

Post-translational modifications for DKFZp686K1684 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DKFZp686K1684 Gene

Domains & Families for DKFZp686K1684 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DKFZp686K1684 Gene

Function for DKFZp686K1684 Gene

Animal Model Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DKFZp686K1684 Gene

Localization for DKFZp686K1684 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DKFZp686K1684 Gene

Pathways & Interactions for DKFZp686K1684 Gene

SuperPathways for DKFZp686K1684 Gene

No Data Available

Interacting Proteins for DKFZp686K1684 Gene

Gene Ontology (GO) - Biological Process for DKFZp686K1684 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DKFZp686K1684 Gene

Transcripts for DKFZp686K1684 Gene

mRNA/cDNA for DKFZp686K1684 Gene

(2) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:

Unigene Clusters for DKFZp686K1684 Gene

Uncharacterized LOC440034:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DKFZp686K1684 Gene

No ASD Table

Relevant External Links for DKFZp686K1684 Gene

GeneLoc Exon Structure for
DKFZp686K1684

Expression for DKFZp686K1684 Gene

SOURCE GeneReport for Unigene cluster for DKFZp686K1684 Gene:

Hs.523576
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DKFZp686K1684 Gene

Orthologs for DKFZp686K1684 Gene

No data available for Orthologs and Evolution for DKFZp686K1684 Gene

Paralogs for DKFZp686K1684 Gene

No data available for Paralogs for DKFZp686K1684 Gene

Variants for DKFZp686K1684 Gene

Sequence variations from dbSNP and Humsavar for DKFZp686K1684 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs10160672 -- 31,834,235(+) gtgag(A/T)taaga intron-variant
rs10574452 -- 31,821,610(+) TTGTC(-/ACAA)ACAAA intron-variant
rs10767905 -- 31,851,092(+) TCCAC(A/C)CGCCT intron-variant
rs10835821 -- 31,849,214(+) TGTGG(C/T)TGCCA intron-variant
rs10835822 -- 31,859,593(+) CTCTA(A/T)TTCTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DKFZp686K1684 Gene

Variant ID Type Subtype PubMed ID
esv2660764 CNV deletion 23128226
esv3625840 CNV gain 21293372
esv3625841 CNV loss 21293372
esv3625842 CNV gain 21293372
esv3625843 CNV gain 21293372
nsv7728 CNV deletion 18451855
nsv825815 CNV gain 20364138

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Variation tolerance and Relevant External Links for DKFZp686K1684 Gene

Disorders for DKFZp686K1684 Gene

Relevant External Links for DKFZp686K1684

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DKFZp686K1684

No disorders were found for DKFZp686K1684 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DKFZp686K1684 Gene

Publications for DKFZp686K1684 Gene

  1. Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. (PMID: 23319000) Luykx J.J. … Ophoff R.A. (Mol. Psychiatry 2013) 3 64
  2. Meta-analysis identifies common variants associated with body mass index in east Asians. (PMID: 22344219) Wen W. … Shu X.O. (Nat. Genet. 2012) 3 64

Products for DKFZp686K1684 Gene

Sources for DKFZp686K1684 Gene

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