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Aliases for DIRC1 Gene

Aliases for DIRC1 Gene

  • Disrupted In Renal Carcinoma 1 2 3
  • Disrupted In Renal Cancer Protein 4

External Ids for DIRC1 Gene

Previous GeneCards Identifiers for DIRC1 Gene

  • GC02M187734
  • GC02M188281
  • GC02M189562
  • GC02M189801
  • GC02M189423
  • GC02M189306
  • GC02M181458

Summaries for DIRC1 Gene

Entrez Gene Summary for DIRC1 Gene

  • This gene consists of two exons and encodes a 104aa protein. Disruption of this gene by translocation t(2;3)(q33;q21) is associated with familial clear cell renal cancer. [provided by RefSeq, Sep 2010]

GeneCards Summary for DIRC1 Gene

DIRC1 (Disrupted In Renal Carcinoma 1) is a Protein Coding gene.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DIRC1 Gene

Genomics for DIRC1 Gene

Regulatory Elements for DIRC1 Gene

Genomic Location for DIRC1 Gene

Start:
188,733,738 bp from pter
End:
188,790,104 bp from pter
Size:
56,367 bases
Orientation:
Minus strand

Genomic View for DIRC1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DIRC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DIRC1 Gene

Proteins for DIRC1 Gene

  • Protein details for DIRC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969H9-DIRC1_HUMAN
    Recommended name:
    Disrupted in renal carcinoma protein 1
    Protein Accession:
    Q969H9
    Secondary Accessions:
    • Q08AK1

    Protein attributes for DIRC1 Gene

    Size:
    104 amino acids
    Molecular mass:
    11440 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DIRC1 Gene

Proteomics data for DIRC1 Gene at MOPED

Post-translational modifications for DIRC1 Gene

No Post-translational modifications

Other Protein References for DIRC1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DIRC1 Gene

Domains for DIRC1 Gene

Protein Domains for DIRC1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for DIRC1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DIRC1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for DIRC1 Gene

Function for DIRC1 Gene

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DIRC1

In Situ Assay Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DIRC1 Gene

Localization for DIRC1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DIRC1 Gene COMPARTMENTS Subcellular localization image for DIRC1 gene
Compartment Confidence
cytosol 2
extracellular 2
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for DIRC1 Gene

Pathways for DIRC1 Gene

SuperPathways for DIRC1 Gene

No Data Available

Interacting Proteins for DIRC1 Gene

Gene Ontology (GO) - Biological Process for DIRC1 Gene

None

No data available for Pathways by source for DIRC1 Gene

Transcripts for DIRC1 Gene

mRNA/cDNA for DIRC1 Gene

(16) Selected AceView cDNA sequences:
(2) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DIRC1 Gene

Disrupted in renal carcinoma 1:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DIRC1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for DIRC1
  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DIRC1 Gene

No ASD Table

Relevant External Links for DIRC1 Gene

GeneLoc Exon Structure for
DIRC1
ECgene alternative splicing isoforms for
DIRC1

Expression for DIRC1 Gene

mRNA expression in normal human tissues for DIRC1 Gene

SOURCE GeneReport for Unigene cluster for DIRC1 Gene Hs.470892

mRNA Expression by UniProt/SwissProt for DIRC1 Gene

Q969H9-DIRC1_HUMAN
Tissue specificity: Expressed at low steady-state level in adult placenta, testis, ovary, prostate, fetal kidney, spleen and skeletal muscle.
genes like me logo Genes that share expressions with DIRC1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein expression for DIRC1 Gene

Orthologs for DIRC1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for DIRC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DIRC1 35
  • 99.36 (n)
  • 98.08 (a)
DIRC1 36
  • 98 (a)
OneToOne
Species with no ortholog for DIRC1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DIRC1 Gene

ENSEMBL:
Gene Tree for DIRC1 (if available)
TreeFam:
Gene Tree for DIRC1 (if available)

Paralogs for DIRC1 Gene

No data available for Paralogs for DIRC1 Gene

Variants for DIRC1 Gene

Sequence variations from dbSNP and Humsavar for DIRC1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs698572 -- 188,782,895(+) AGATT(G/T)CAGAG intron-variant
rs781238 -- 188,740,044(+) AAAAA(G/T)TACTT intron-variant
rs781239 -- 188,740,199(+) TACAT(G/T)GATAG intron-variant
rs781240 -- 188,740,561(+) ACATT(A/G)ACATT intron-variant
rs781241 -- 188,742,954(+) TTTAC(A/G)AAAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DIRC1 Gene

Variant ID Type Subtype PubMed ID
dgv4403n71 CNV Gain 21882294
esv2721253 CNV Deletion 23290073
nsv215472 CNV Loss 16902084
esv2721254 CNV Deletion 23290073
esv1004927 CNV Deletion 20482838
esv1222504 CNV Deletion 17803354

Relevant External Links for DIRC1 Gene

HapMap Linkage Disequilibrium report
DIRC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DIRC1 Gene

Disorders for DIRC1 Gene

UniProtKB/Swiss-Prot

DIRC1_HUMAN
  • Note=A chromosomal aberration involving DIRC1 is associated with familial clear cell renal carcinoma. Translocation t(2;3)(q33;q21).

(1) University of Copenhagen DISEASES for DIRC1 Gene

genes like me logo Genes that share disorders with DIRC1: view

Publications for DIRC1 Gene

  1. The DIRC1 gene at chromosome 2q33 spans a familial RCC-associated t(2;3)(q33;q21) chromosome translocation. (PMID: 11587072) Druck T. … Huebner K. (J. Hum. Genet. 2001) 2 3 4 23
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 3 4
  4. Hemizygous deletion of COL3A1, COL5A2, and MSTN causes a complex phenotype with aortic dissection: a lesson for and from true haploinsufficiency. (PMID: 20648054) Meienberg J. … MA!tyA!s G. (Eur. J. Hum. Genet. 2010) 3
  5. Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population. (PMID: 23251661) Comuzzie A.G. … Butte N.F. (PLoS ONE 2012) 3

Products for DIRC1 Gene

Sources for DIRC1 Gene

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