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Aliases for DIP2A-IT1 Gene

Subcategory (RNA class) for DIP2A-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DIP2A-IT1 Gene

  • DIP2A Intronic Transcript 1 2 3 5
  • DIP2A Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for DIP2A-IT1 Gene

Previous GeneCards Identifiers for DIP2A-IT1 Gene

  • GC00U933293
  • GC21P047883

Summaries for DIP2A-IT1 Gene

GeneCards Summary for DIP2A-IT1 Gene

DIP2A-IT1 (DIP2A Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DIP2A-IT1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DIP2A-IT1 Gene

Genomics for DIP2A-IT1 Gene

Regulatory Elements for DIP2A-IT1 Gene

Enhancers for DIP2A-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH21H046499 1.1 Ensembl ENCODE 11.8 +38.6 38551 2 BCOR ELF3 HDGF LEF1 SAP130 ETV1 BACH1 BATF FOSL1 ZNF316 MCM3AP DIP2A-IT1 DIP2A PRMT2 RNU6-396P
GH21H046514 0.8 Ensembl ENCODE 12.1 +52.8 52838 1 NFIC ZNF362 HNF4A RAD21 SPI1 DIP2A DIP2A-IT1 MCM3AP-AS1 MCM3AP S100B RNU6-396P
GH21H046252 0.9 ENCODE 10.1 -208.4 -208403 2 HDAC1 HDGF PKNOX1 ARNT INSM2 ZNF76 RARA ZNF766 EGR1 ATF7 YBEY MCM3AP-AS1 LSS C21orf58 PCNT ENSG00000223901 FTCD DIP2A DIP2A-IT1 SPATC1L
GH21H046508 0.7 ENCODE 12.3 +47.6 47553 2 GATAD2A DRAP1 KLF1 TFE3 FOXA2 SAP130 NFIA FOXA3 KLF17 RAD21 DIP2A-IT1 DIP2A S100B PRMT2 SPATC1L YBEY RNU6-396P
GH21H046541 0.5 dbSUPER 11.7 +79.6 79628 2 POLR2A ZNF692 ATF2 DIP2A S100B SPATC1L MCM3AP DIP2A-IT1 MCM3AP-AS1 RNU6-396P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DIP2A-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DIP2A-IT1 Gene

Chromosome:
21
Start:
46,462,471 bp from pter
End:
46,469,306 bp from pter
Size:
6,836 bases
Orientation:
Plus strand

Genomic View for DIP2A-IT1 Gene

Genes around DIP2A-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DIP2A-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DIP2A-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DIP2A-IT1 Gene

Proteins for DIP2A-IT1 Gene

Post-translational modifications for DIP2A-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DIP2A-IT1 Gene

Domains & Families for DIP2A-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DIP2A-IT1 Gene

Function for DIP2A-IT1 Gene

Phenotypes From GWAS Catalog for DIP2A-IT1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for DIP2A-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DIP2A-IT1 Gene

Localization for DIP2A-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DIP2A-IT1 Gene

Pathways & Interactions for DIP2A-IT1 Gene

SuperPathways for DIP2A-IT1 Gene

No Data Available

Interacting Proteins for DIP2A-IT1 Gene

Gene Ontology (GO) - Biological Process for DIP2A-IT1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DIP2A-IT1 Gene

Drugs & Compounds for DIP2A-IT1 Gene

No Compound Related Data Available

Transcripts for DIP2A-IT1 Gene

mRNA/cDNA for DIP2A-IT1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DIP2A-IT1 Gene

DIP2A intronic transcript 1 (non-protein coding):
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for DIP2A-IT1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for DIP2A-IT1 Gene

No ASD Table

Relevant External Links for DIP2A-IT1 Gene

GeneLoc Exon Structure for
DIP2A-IT1
ECgene alternative splicing isoforms for
DIP2A-IT1

Expression for DIP2A-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DIP2A-IT1 Gene

SOURCE GeneReport for Unigene cluster for DIP2A-IT1 Gene:

Hs.737163
genes like me logo Genes that share expression patterns with DIP2A-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DIP2A-IT1 Gene

Orthologs for DIP2A-IT1 Gene

Evolution for DIP2A-IT1 Gene

ENSEMBL:
Gene Tree for DIP2A-IT1 (if available)
TreeFam:
Gene Tree for DIP2A-IT1 (if available)

No data available for Orthologs for DIP2A-IT1 Gene

Paralogs for DIP2A-IT1 Gene

No data available for Paralogs for DIP2A-IT1 Gene

Variants for DIP2A-IT1 Gene

Sequence variations from dbSNP and Humsavar for DIP2A-IT1 Gene

SNP ID Clin Chr 21 pos Sequence Context AA Info Type
rs1000776687 -- 46,461,141(+) GTATT(-/AAA)AAAAA intron-variant, upstream-variant-2KB
rs1000824608 -- 46,467,745(+) TGTTT(G/T)TTTTT intron-variant
rs1001225576 -- 46,461,390(+) TACTG(C/T)ACTGC intron-variant, upstream-variant-2KB
rs1001277830 -- 46,469,434(+) CTTAA(C/G)AGGAG intron-variant, downstream-variant-500B
rs1001285485 -- 46,465,561(+) TGTGT(A/T)GACAC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DIP2A-IT1 Gene

Variant ID Type Subtype PubMed ID
esv2762115 CNV loss 21179565
nsv459312 CNV gain 19166990
nsv470910 CNV gain 18288195
nsv587998 CNV gain 21841781

Relevant External Links for DIP2A-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DIP2A-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DIP2A-IT1 Gene

Disorders for DIP2A-IT1 Gene

Relevant External Links for DIP2A-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DIP2A-IT1

No disorders were found for DIP2A-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DIP2A-IT1 Gene

Publications for DIP2A-IT1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 60

Products for DIP2A-IT1 Gene

Sources for DIP2A-IT1 Gene

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