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Category Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21

GIFtS
-

DIO3OS Gene

RNA gene GIFtS: 29
GCID: GC14M102018

DIO3 opposite strand/antisense RNA (head to head)

(Previous names: chromosome 14 open reading frame 134, deiodinase, iodothyronine,...)
(Previous symbol: C14orf134)

Search for DIO3OS
in

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(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc, ⁷Ensembl, ⁸DME, ⁹miRBase, and/or ¹⁰fRNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 3

Aliases
DIO3 Opposite Strand/Antisense RNA (Head To Head)¹ ²		Chromosome 14 Open Reading Frame 134¹
C14orf134¹ ²		Deiodinase, Iodothyronine, Type III Opposite Strand¹
DIO3-AS1¹ ²		DIO3 Opposite Strand/Antisense RNA¹
NCRNA00041¹ ²		DIO3-OS²

External Ids:	HGNC: 20348¹	Entrez Gene: 64150²	Ensembl: ENSG00000258498⁷	OMIM: 608523⁵	UniProtKB: Q9HAR6⁴

ORGUL members:
	NONCODE:n338499 n342940

Export aliases for DIO3OS gene to outside databases

Previous GC identifers: GC14M100013 GC14U900485 GC14M101088

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for DIO3OS:

The mouse and human DIO3OS and DIO3 (MIM 601038) genes overlap and are transcribed in opposite directions. The mouse

Dio3 gene is imprinted from the paternal allele during fetal development, suggesting that DIO3OS is a noncoding gene

that may have a role in maintaining monoallelic expression of DIO3 (Hernandez et al., 2004 (PubMed

14962667)).(supplied by OMIM, Mar 2008)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section

RefSeq DNA sequence:

NC_000014.8 NC_018925.1 NT_026437.12

Regulatory elements:

SABiosciences Regulatory transcription factor binding sites in the DIO3OS gene promoter:
GR Nkx3-1 Nkx3-1 v4 Sp1 STAT5A Nkx3-1 v1 Nkx3-1 v2 PPAR-alpha Nkx3-1 v3 GR-alpha
Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids

Search SABiosciences Chromatin IP Primers for DIO3OS

Epigenetics:

QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DIO3OS

Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.31 Ensembl cytogenetic band: 14q32.31 HGNC cytogenetic band: 14q32.31

DIO3OS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DIO3OS gene location

GeneLoc information about chromosome 14 GeneLoc Exon Structure

GeneLoc location for GC14M102018: view genomic region (about GC identifiers)

Start:	102,018,558 bp from pter	End:	102,026,768 bp from pter
Size:	8,211 bases	Orientation:	minus strand

ORGUL member locations:
Legend (see complete legend)

n342940
n338499

lncRNA
Full Legend

102018559 102022650 102026740 chr14

(According to ¹UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to ²PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/TrEMBL: Q9HAR6 (See protein sequence)

Recommended Name: Uterine-derived 14 kDa protein

Size: 136 amino acids; 14765 Da

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q9HAR6

(According to ¹UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or ²DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
About This Section

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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to ¹UniProtKB, ²MINT, ³I2D, and/or ⁴STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
About This Section

Interactions:

Search SABiosciences Gene Network Central^TM Interacting Genes and Proteins Networks for DIO3OS

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section

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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
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About This Section

Unigene Clusters for DIO3OS:

DIO3 opposite strand/antisense RNA (head to head)

Hs.525597 [show with all ESTs], Hs.660271 [show with all ESTs], Hs.744281 [show with all ESTs]

Unigene Representative Sequences: BC065701, AF469201, AF469202

12 Ensembl transcripts including schematic representations, and UCSC links where relevant:

ENST00000557109(lincRNA)(uc001ykd.1) ENST00000556120(lincRNA) ENST00000553575(lincRNA)(uc001ykb.1)

ENST00000556266(lincRNA) ENST00000554441(lincRNA) ENST00000554735(lincRNA) ENST00000555174(lincRNA)(uc001yke.3 uc001ykg.3)

ENST00000557661(lincRNA)(uc001ykf.3) ENST00000557532(lincRNA)(uc001ykh.3) ENST00000554694(lincRNA)

ENST00000555882(lincRNA) ENST00000553729(lincRNA)

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Additional cDNA sequence:

AF469202.1 NR_002770.1

9 DOTS entries:

DT.97842261 DT.95229630 DT.100786098 DT.100019718 DT.100019717 DT.407543 DT.120763448 DT.120763452

DT.100786096

GeneLoc Exon Structure

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for DIO3OS:none

DIO3OS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AGGGGTTGTG

About this image

DIO3OS expression in embryonic tissues and stem cells

Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine About this table

Stem Cell Differentiation: 1 LifeMap Cell

Name

Category

PureStem™ mesenchymal progenitor 7PEND24 (Embryonic Progenitor Cell)

Cartilage, Neural Crest

Expression:

Positive

Negative

Selective marker

Experimental details:

Curated

Microarrays

In-situ hybridization

Genevestigator expression for DIO3OS

SOURCE GeneReport for Unigene clusters: Hs.525597 Hs.660271 Hs.744281

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In Situ
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(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD , ⁵MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or ⁶Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for DIO3OS gene from 1 species (see representative species ) About this table

Organism	Taxonomic classification	Gene	Description	Human Similarity	Orthology Type	Details
mouse (Mus musculus)	Mammalia	Dio3os⁵	deiodinase, iodothyronine type III, opposite strand	--		12 (60.56 cM) 110275384

ENSEMBL Gene Tree for DIO3OS (if available)
TreeFam Gene Tree for DIO3OS (if available)

(Paralogs according to ¹HomoloGene,
²Ensembl, and ³SIMAP, Pseudogenes according to ⁴Pseudogene.org Build 68)
About This Section

(SNPs/Variants according to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

SNP ID	Valid	Clinical significance	Chr 14 pos	Sequence	#	AA Chg	Type	More	#	Allele freq	Pop	Total sample	More
Genomic Data					Transcription Related Data				Allele Frequencies
				--	--	--		--	--
rs189213629^1,2		--	102018084(+)	`CTGCGA/GTTGTG`	1	--	ds500¹		0	--	--	--	--
rs111429072^1,2		--	102018157(+)	`GCACCC/TGGATG`	1	--	ds500¹		2		CSA WA	120
rs138318013^1,2		--	102018206(+)	`GGTGAC/TGCCCT`	1	--	ds500¹		0	--	--	--	--
rs142225342^1,2		--	102018355(+)	`GAGCAA/GACACA`	1	--	ds500¹		0	--	--	--	--
rs182058881^1,2		--	102018519(+)	`CCCTCA/GCTGAC`	1	--	ds500¹		0	--	--	--	--
rs146179617^1,2		--	102018547(+)	`CCCCCA/GGCACC`	1	--	ds500¹		0	--	--	--	--
rs1048440^1,2	H	--	102018825(-)	`TGTGGC/TTCCAG`	1	--	nc-transcript-variant		7		MN NS EA NA	604
rs75480446^1,2	C,	--	102018917(+)	`AGGGAT/AGAGAT`	1	--	nc-transcript-variant		3		NA EA	242
rs17100344^1,2	C,F,H,	--	102018946(+)	`AACGAA/GGAGCA`	1	--	nc-transcript-variant		13		NA NS EA CSA WA	800
rs60082567^1,2	C,F,	--	102018963(+)	`CCCAGG/CCTTCT`	1	--	nc-transcript-variant		5		NA CSA WA	243

HapMap Linkage Disequilibrium report for DIO3OS (102018558 - 102026768 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for DIO3OS: --

SABiosciences Cancer Mutation PCR Assays

Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DIO3OS

DNA2.0 Custom Variant and Variant Library Synthesis for DIO3OS

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

DIO3OS for disorders About MalaCards

DIO3OS for disorders About GeneDecksing

OMIM gene information: 608523 OMIM disorders: --

Human Genome Epidemiology (HuGE) Navigator: DIO3OS (1 document)

Export disorders for DIO3OS gene to outside databases

(in PubMed. Associations of this gene to articles via ¹Entrez Gene, ²UniProtKB/Swiss-Prot, ³HGNC, ⁴GAD, ⁵PharmGKB, ⁶HMDB, ⁷DrugBank, ⁸UniProtKB/TrEMBL, ⁹ Novoseek, and/or ¹⁰fRNAdb)
About This Section

PubMed articles for DIO3OS gene integrated from 9 sources:
(articles sorted by number of sources associating them with DIO3OS)

Utopia: connect your pdf to the dynamic
world of online information

Complex organization and structure of sense and antisense transcripts expressed from the DIO3 gene imprinted locus. (PubMed id 14962667)^{1, 3, 9} Hernandez A....St Germain D.L. (2004)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)¹ Strausberg R.L....Marra M.A. (2002)
Regulation of type III iodothyronine deiodinase expression in human cell lines. (PubMed id 16935842)⁹ Kester M.H....Visser T.J. (2006)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section

Entrez Gene: 64150	HGNC: 20348	Ensembl:ENSG00000258498	euGenes: HUgn64150	ECgene: DIO3OS
H-InvDB: DIO3OS

(According to HUGE)
About This Section

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
PharmGKB entry for DIO3OS	Pharmacogenomics, SNPs, Pathways

Intellectual Property for DIO3OS gene
(Patent information from GeneIP, Licensable technologies from WIS Yeda, Salk, Tufts, IP news from LifeMap Sciences, Inc.)

About This Section

Patent Information for DIO3OS gene:
Search GeneIP for patents involving DIO3OS

GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search

(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
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DIO3 opposite strand/antisense RNA (head to head)

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DIO3 opposite strand/antisense RNA (head to head)

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