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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DIO3OS Gene

RNA gene   GIFtS: 28
GCID: GC14M102018

DIO3 Opposite Strand/Antisense RNA (Head To Head)

(Previous names: chromosome 14 open reading frame 134, deiodinase, iodothyronine,...)
(Previous symbol: C14orf134)
  Search for DIO3OS
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Subcategory (RNA class): lncRNA

Quality score for this RNA gene is 4

Aliases
DIO3 Opposite Strand/Antisense RNA (Head To Head)1 2     Non-Protein Coding RNA 411
C14orf1341 2     DIO3-AS12
Chromosome 14 Open Reading Frame 1341     DIO3-OS2
Deiodinase, Iodothyronine, Type III Opposite Strand1     NCRNA000412
DIO3 Opposite Strand/Antisense RNA1     

External Ids:    HGNC: 203481   Entrez Gene: 641502   Ensembl: ENSG000002584987   OMIM: 6085235   UniProtKB: Q9HAR64   
ORGUL members:    fRNAdb10:FR020332      
H-InvDB12:HIT000080392    
NCBI13:AF469204    
NONCODE14:n342940 n338499 n342938      
RNAdb15:HIV1721    

Export aliases for DIO3OS gene to outside databases

Previous GC identifers: GC14M100013 GC14U900485 GC14M101088


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for DIO3OS Gene:
The mouse and human DIO3OS and DIO3 (MIM 601038) genes overlap and are transcribed in opposite directions. The
mouse Dio3 gene is imprinted from the paternal allele during fetal development, suggesting that DIO3OS is a
noncoding gene that may have a role in maintaining monoallelic expression of DIO3 (Hernandez et al., 2004 (PubMed
14962667)).(supplied by OMIM, Mar 2008)

GeneCards Summary for DIO3OS Gene: 
DIO3OS (DIO3 opposite strand/antisense RNA (head to head)) is an RNA gene, and is affiliated with the lncRNA class.



fRNAdb sequence ontology for DIO3OS:
ncRNA - An RNA transcript that does not encode for a protein rather the RNA molecule is the gene product.

View fRNAdb secondary structures for DIO3OS

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.2  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DIO3OS gene promoter:
         GR   Nkx3-1   Nkx3-1 v4   Sp1   STAT5A   Nkx3-1 v1   Nkx3-1 v2   PPAR-alpha   Nkx3-1 v3   GR-alpha   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for DIO3OS

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DIO3OS


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q32.31   Ensembl cytogenetic band:  14q32.31   HGNC cytogenetic band: 14q32.31

DIO3OS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DIO3OS gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M102018:  view genomic region     (about GC identifiers)

Start:
102,018,558 bp from pter      End:
102,026,768 bp from pter
Size:
8,211 bases      Orientation:
minus strand
ORGUL member locations:
Legend (see complete legend)

ORGUL Member Locations for DIO3OS

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/TrEMBL: Q9HAR6 (See protein sequence)
Recommended Name: Uterine-derived 14 kDa protein  
Size: 136 amino acids; 14765 Da


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section
HGNC Gene Families: 
LNCRNA: Long non-coding RNAs

ProtoNet protein and cluster: Q9HAR6


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section



Interactions:

    Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DIO3OS

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
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Browse Tocris compounds for DIO3OS

Search CenterWatch for drugs/clinical trials and news about DIO3OS

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section
1 fRNAdb Secondary structure:


Unigene Clusters for DIO3OS:

DIO3 opposite strand/antisense RNA (head to head)
Hs.525597  [show with all ESTs], Hs.660271  [show with all ESTs], Hs.745484
Unigene Representative Sequences: BC065701, AF469202, AF469201
13 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000557109(lincRNA)(uc001ykd.1) ENST00000556120(lincRNA) ENST00000553575(lincRNA)(uc001ykb.1)
ENST00000556266(lincRNA) ENST00000554441(lincRNA) ENST00000554735(lincRNA) ENST00000555174(lincRNA)(uc001yke.3 uc001ykg.3)
ENST00000557661(lincRNA)(uc001ykf.3) ENST00000557532(lincRNA)(uc001ykh.3) ENST00000554694(lincRNA)
ENST00000555882(lincRNA) ENST00000553729(lincRNA) ENST00000408206(lincRNA)(uc021sdw.1)
miRNA
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Additional mRNA sequence: AF469201.1 

9 DOTS entries:

DT.97842261  DT.95229630  DT.100786098  DT.100019718  DT.100019717  DT.407543  DT.120763448  DT.120763452 
DT.100786096 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

Expression evidence for DIO3OS:H-invDB

DIO3OS expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AGGGGTTGTG
DIO3OS Expression
About this image


Genevestigator expression for DIO3OS

SOURCE GeneReport for Unigene clusters: Hs.525597 Hs.660271 Hs.745484
    SABiosciences Custom PCR Arrays for DIO3OS
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and mouse.

Orthologs for DIO3OS gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Dio3os5 deiodinase, iodothyronine type III, opposite strand   --   12 (60.56 cM) 110275384 


ENSEMBL Gene Tree for DIO3OS (if available)
TreeFam Gene Tree for DIO3OS (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/136 SNPs in DIO3OS are shown (see all 136)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 14 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1892136291,2
--102018084(+) CTGCGA/GTTGTG 1 -- ds50010--------
rs1114290721,2
C,F--102018157(+) GCACCC/TGGATG 1 -- ds50012Minor allele frequency- T:0.02CSA WA 120
rs1383180131,2
--102018206(+) GGTGAC/TGCCCT 1 -- ds50010--------
rs1422253421,2
--102018355(+) GAGCAA/GACACA 1 -- ds50010--------
rs1820588811,2
--102018519(+) CCCTCA/GCTGAC 1 -- ds50010--------
rs1461796171,2
--102018547(+) CCCCCA/GGCACC 1 -- ds50010--------
rs10484401,2
H--102018825(-) TGTGGC/TTCCAG 1 -- nc-transcript-variant7Minor allele frequency- T:0.02MN NS EA NA 604
rs754804461,2
C,F--102018917(+) AGGGAT/AGAGAT 1 -- nc-transcript-variant3Minor allele frequency- A:0.04NA EA 242
rs171003441,2
C,F,H--102018946(+) AACGAA/GGAGCA 1 -- nc-transcript-variant13Minor allele frequency- G:0.14NA NS EA CSA WA 800
rs600825671,2
C,F--102018963(+) CCCAGG/CCTTCT 1 -- nc-transcript-variant5Minor allele frequency- C:0.21NA CSA WA 243

HapMap Linkage Disequilibrium report for DIO3OS (102018558 - 102026768 bp)

Structural Variations
     Database of Genomic Variants (DGV) 3 variations for DIO3OS:    About this table     
Variant IDTypeSubtypePubMed ID
nsv902251CNV Loss21882294
nsv902253CNV Loss21882294
nsv902252CNV Loss21882294

SABiosciences Cancer Mutation PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section

DIO3OS for disorders           About MalaCards
OMIM gene information: 608523    OMIM disorders: --


DIO3OS for disorders           About GeneDecksing

Human Genome Epidemiology (HuGE) Navigator: DIO3OS (1 document)

Export disorders for DIO3OS gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for DIO3OS gene integrated from 9 sources:
(articles sorted by number of sources associating them with DIO3OS)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Complex organization and structure of sense and antisense transcripts expressed from the DIO3 gene imprinted locus. (PubMed id 14962667)1, 3, 9 Hernandez A....St Germain D.L. (2004)
  2. Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initia tive SHARe Study. (PubMed id 23192594)1 Velez Edwards D.R....Edwards T.L. (2013)
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
  4. Regulation of type III iodothyronine deiodinase expression in human cell lines. (PubMed id 16935842)9 Kester M.H....Visser T.J. (2006)
  5. (PubMed id 15103394)10 
  6. (PubMed id 18089548)10 
  7. (PubMed id 15608161)10 

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 64150 HGNC: 20348 Ensembl:ENSG00000258498 euGenes: HUgn64150 ECgene: DIO3OS
H-InvDB: DIO3OS

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for DIO3OS Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for DIO3OS gene:
Search GeneIP for patents involving DIO3OS

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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