DHX36 Gene
protein-coding GIFtS: 54
GCID: GC03M153990
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DEAH (Asp-Glu-Ala-His) box polypeptide 36(Previous name: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 36 )
(Previous symbol: DDX36)
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Aliases
for DHX36 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| DEAH (Asp-Glu-Ala-His) Box Polypeptide 361 2 | | MLE-Like Protein 12 3 | | DDX361 2 3 | | RNA Helicase Associated With AU-Rich Element ARE2 3 | | MLEL11 2 3 | | G4R12 5 | | KIAA14881 3 5 | | G4 Resolvase-12 | | RHAU2 3 5 | | Probable ATP-Dependent RNA Helicase DHX362 | | DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 361 2 | | EC 3.6.4.133 | | DEAH Box Protein 362 3 | | EC 3.6.18 |
Export aliases for DHX36 gene to outside databasesPrevious GC identifers: GC03M155275 GC03M155314 GC03M155476 GC03M151389 |
Summaries
for DHX36 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for DHX36:
This gene is a member of the DEAH-box family of RNA-dependent NTPases which are named after the conserved amino acidsequence Asp-Glu-Ala-His in motif II. The protein encoded by this gene has been shown to enhance the deadenylation anddecay of mRNAs with 3'-UTR AU-rich elements (ARE-mRNA). The protein has also been shown to resolve into single strandsthe highly stable tetramolecular DNA configuration (G4) that can form spontaneously in guanine-rich regions of DNA.Alternative splicing results in multiple transcript variants encoding different isoforms. (provided by RefSeq, Jul2008)
UniProtKB/Swiss-Prot: DHX36_HUMAN, Q9H2U1Function: Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequenceelement. May function in sex development and spermatogenesis
Gene Wiki entry for DHX36
|
Genomic Views
for DHX36 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000003.11 NC_018914.1 NT_005612.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the DHX36 gene promoter:
AML1a Meis-1b HNF-1A RORalpha1 Nkx6-1 HNF-1 Meis-1a LyF-1 Meis-1 Ik-1
Other transcription factors
Search SABiosciences Chromatin IP Primers for DHX36
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DHX36 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 3q25.2 Ensembl cytogenetic band: 3q25.2 HGNC cytogenetic band: 3q25.2DHX36 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 3 GeneLoc Exon Structure GeneLoc location for GC03M153990: view genomic region
(about GC identifiers)
Start:
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153,990,335 bp from pter |
End:
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154,042,286 bp from pter |
Size:
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51,952 bases |
Orientation:
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minus strand |
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Proteins
for DHX36 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: DHX36_HUMAN, Q9H2U1 (See
protein sequence)Recommended Name: Probable ATP-dependent RNA helicase DHX36 Size: 1008 amino acids; 114760 Da
Subunit: Interacts with EIF2C1, EIF2C2, PARN, EXOSC3 and EXOSC10
Subcellular location: Nucleus. Cytoplasm. Note=Isoform 1 preferentially localized to the nucleus and isoform 2localized to the cytoplasm. However, partitioning of cellular localization between the nucleus and cytoplasm is notexclusive, as isoform 1 was also detected in the cytoplasm. Both isoforms were excluded from nucleoli
Secondary accessions: B2RB00 Q70JU3 Q8IYE5 Q9P240Alternative splicing: 3 isoforms: Q9H2U1-1 Q9H2U1-2 Q9H2U1-3 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for DHX36: NX_Q9H2U1
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q9H2U1
4/7 DME Specific Peptides for DHX36 (Q9H2U1) (see all 7)
DHX36 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (2 alternative transcripts):
NP_001107869.1 NP_065916.2
ENSEMBL proteins: ENSP00000417078 ENSP00000309296 ENSP00000330113 ENSP00000418756 ENSP00000419862 ENSP00000419761 ENSP00000444247
Human Recombinant Protein Products for DHX36:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table
DHX36 for ontologies About GeneDecksing
DHX36 Antibody Products:
Assay Products for DHX36: |
Protein
Domains /
Families
for DHX36 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
DHX36 for domains About GeneDecksing
5/6 InterPro domains/families (see all 6):Graphical View of Domain Structure for InterPro Entry Q9H2U1ProtoNet protein and cluster: Q9H2U1 2 Blocks protein families: IPB002464 ATP-dependent helicase IPB007502 Helicase-associated region
UniProtKB/Swiss-Prot: DHX36_HUMAN, Q9H2U1Similarity: Belongs to the DEAD box helicase family. DEAH subfamilySimilarity: Contains 1 helicase ATP-binding domainSimilarity: Contains 1 helicase C-terminal domain |
Function
for DHX36 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: DHX36_HUMAN, Q9H2U1Function: Plays a role in degradation and deadenylation of mRNAs containing in their 3'-UTR the consensus ARE sequenceelement. May function in sex development and spermatogenesisCatalytic activity: ATP + H(2)O = ADP + phosphate Enzyme Numbers (IUBMB): EC 3.6.12 EC 3.6.4.131
Gene Ontology (GO): 5/6 molecular function terms (GO ID links to tree view) (see all 6): About this table
DHX36 for ontologies About GeneDecksing
Phenotypes:
2 GenomeRNAi human phenotypes for DHX36:
7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Dhx36):
DHX36 for phenotypes About GeneDecksing
Animal Models:
Mouse knock-out Dhx36tm1.1Pmt for DHX36
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DHX36 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DHX36 (see all 2)
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Synthesis Service for DHX36 | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DHX36 |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DHX36 |
|
Pathways & Interactions
for DHX36 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Unified GeneCards pathways About this table
See pathways by source
| Super-pathway | contained gene-specific pathways |
|---|
| 1 | Deadenylation-dependent mRNA decay | |
Pathway sources
See GeneCards unified pathways
Show all pathways
1 
Kegg Pathway (Kegg details for DHX36):
DHX36 for pathways About GeneDecksing
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DHX36
STRING Interaction
Network Preview (showing 5 interactants - click image to see 14)
5/175 Interacting proteins for DHX36 (Q9H2U12, 3 ENSP000004170784) via UniProtKB, MINT, STRING, and/or I2D (see all 175)About this table
Gene Ontology (GO): 2 biological process terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0009615 | response to virus |
IEA | -- | | GO:0043330 | response to exogenous dsRNA |
IEA | -- |
DHX36 for ontologies About GeneDecksing
|
Drugs & Compounds
for DHX36 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for DHX36
Search CenterWatch for drugs/clinical trials and news about DHX36
|
Transcripts
for DHX36 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for DHX36 gene (2 alternative transcripts): NM_001114397.1 NM_020865.2 Unigene Cluster for DHX36: DEAH (Asp-Glu-Ala-His) box polypeptide 36 Hs.446270 [show with all ESTs]Unigene Representative Sequence: NM_02086514 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000496811(uc010hvq.3 uc003ezy.4 uc003ezz.4) ENST00000308361
ENST00000495598 ENST00000329463 ENST00000477549 ENST00000479934 ENST00000481941
ENST00000460695 ENST00000469977 ENST00000481332 ENST00000460875 ENST00000462464
ENST00000491011 ENST00000544526
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DHX36 (see all 4)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DHX36 (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 2): DHX36 (NM_020865) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DHX36 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DHX36 |
Additional cDNA sequence: AB040921.1 AF217190.1 AJ577133.1 AJ577134.1 AK096808.1 AK303720.1 AK314435.1 BC036035.1 11 DOTS entries: DT.446538 DT.100784723 DT.91890324 DT.100723681 DT.120886479 DT.100659478 DT.95270999 DT.95271000 DT.102824538 DT.95270996 DT.100734876 24/255 AceView cDNA sequences (see all 255): BF726949 BC036035 Z43572 F13265 BM843076 BQ416908 AW576359 AI797476 AA809979 CA455105 AI220544 AA428268 BM475651 CD244340 BQ722339 CB158304 BF726166 CR593983 CD366211 AA730061 CA428821 N64533 BU151002 AA505255
GeneLoc Exon Structure
|
Expression
for DHX36 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| DHX36 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCCACTCTTT
About this image
See DHX36 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for DHX36
SOURCE GeneReport for Unigene cluster: Hs.446270
UniProtKB/Swiss-Prot: DHX36_HUMAN, Q9H2U1Tissue specificity: Highly expressed in testis
SABiosciences Custom PCR Arrays for DHX36
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DHX36
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat DHX36 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DHX36 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DHX36 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DHX36 |
Orthologs
for DHX36 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for DHX36 gene from 7/26 species (see all 26) About this table
ENSEMBL Gene Tree for DHX36 (if available)
TreeFam Gene Tree for DHX36 (if available) |
Paralogs
for DHX36 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for DHX36 gene
- DHX402 YTHDC22 DHX572 DHX352 DHX92 DHX292 DHX302 TDRD92
- DHX332 DHX162 DHX382 DHX82
13 SIMAP similar genes for DHX36 using alignment to 5 protein entries: DHX36_HUMAN (see all proteins):DHX29 YTHDC2 DHX9 DHX57 DHX30 DHX33
TDRD9 DHX40 DKFZp762F2011 DHX35 HIG-1 DHX15
DHX37
DHX36 for paralogs About GeneDecksing
|
Genomic Variants
for DHX36 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 3 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for DHX36 (153990335 - 154042286 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for DHX36: --
Human Gene Mutation Database (HGMD): DHX36
| SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DHX36 |
|
Disorders
/ Diseases
for DHX36 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 DHX36 for disorders About MalaCards
DHX36 for disorders About GeneDecksing
OMIM gene information: 612767
OMIM disorders: --
Human Genome Epidemiology (HuGE) Navigator: DHX36 (1 document)
Export disorders for DHX36 gene to outside databases
|
Publications
for DHX36 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for DHX36 gene, integrated from 9 sources (see all 37):
(articles sorted by number of sources associating them with DHX36) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- Molecular cloning and characterization of human DDX36 and mouse Ddx36 genes, new members of the DEAD/H box superfamily. (PubMed id 12198572)1, 2, 9 Fu J.-J.... Lu G.-X. (2002)
- Proteomic and functional analysis of Argonaute-containing mRNA- protein complexes in human cells. (PubMed id 17932509)1, 2 Hoeck J.... Meister G. (2007)
- Facilitation of mRNA deadenylation and decay by the exosome-bound, DExH protein RHAU. (PubMed id 14731398)1, 2 Tran H.... Nagamine Y. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Prediction of the coding sequences of unidentified human genes. XVII. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 10819331)1, 2 Nagase T.... Ohara O. (2000)
- Expression research for human DDX36 and mouse Ddx36 gene in the adult testis. (PubMed id 12812084)1, 9 Fu J.J....Lu G.X. (2003)
- The DEXH protein product of the DHX36 gene is the major source of tetramolecular quadruplex G4-DNA resolving activity in HeLa cell lysates. (PubMed id 16150737)1, 9 Vaughn J.P....Akman S.A. (2005)
- A census of human soluble protein complexes. (PubMed id 22939629)1 Havugimana P.C....Emili A. (2012)
- Host cell interactome of HIV-1 Rev includes RNA helica ses involved in multiple facets of virus production. (PubMed id 22174317)1 Naji S....Gerace L. (2012)
- The RNA helicase RHAU (DHX36) unwinds a G4-quadruplex in human telomerase RNA and promotes the formation of the P1 helix template boun dary. (PubMed id 22238380)1 Booy E.P....McKenna S.A. (2012)
|
External Searches for DHX36 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing DHX36 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing DHX36 gene
(According to HUGE)
About This Section
| |
Specialized Databases showing DHX36 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for DHX36 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for DHX36 gene:
Search GeneIP for patents involving DHX36
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for DHX36 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
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| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DHX36 |
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