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Aliases for DHX35 Gene

Aliases for DHX35 Gene

  • DEAH-Box Helicase 35 2 3 5
  • DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 35 2 3
  • DEAH (Asp-Glu-Ala-His) Box Polypeptide 35 2 3
  • C20orf15 3 4
  • DDX35 3 4
  • Probable ATP-Dependent RNA Helicase DHX35 3
  • DEAH-Box Protein 35 3
  • DEAH Box Protein 35 4
  • EC 3.6.4.13 4
  • KAIA0875 3
  • EC 3.6.1 61

External Ids for DHX35 Gene

Previous HGNC Symbols for DHX35 Gene

  • C20orf15
  • DDX35

Previous GeneCards Identifiers for DHX35 Gene

  • GC20P038229
  • GC20P038276
  • GC20P037024
  • GC20P037590
  • GC20P034328

Summaries for DHX35 Gene

Entrez Gene Summary for DHX35 Gene

  • DEAD box proteins characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of the DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The function of this gene product which is a member of this family, has not been determined. Alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jun 2010]

GeneCards Summary for DHX35 Gene

DHX35 (DEAH-Box Helicase 35) is a Protein Coding gene. GO annotations related to this gene include nucleic acid binding and helicase activity. An important paralog of this gene is DHX16.

UniProtKB/Swiss-Prot for DHX35 Gene

  • May be involved in pre-mRNA splicing.

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DHX35 Gene

Genomics for DHX35 Gene

Regulatory Elements for DHX35 Gene

Enhancers for DHX35 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH20G038985 1.4 Ensembl ENCODE dbSUPER 33.3 +23.5 23465 1.5 HDAC1 ELF3 SIN3A RARA ZNF366 SCRT2 FOS HMG20B CEBPB ZEB2 DHX35 NPM1P19 PIR38411
GH20G038997 1.4 FANTOM5 ENCODE 26.5 +35.6 35611 1.1 HDGF PKNOX1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 SLC30A9 ZNF766 DHX35 FAM83D NPM1P19 PIR38411
GH20G038960 1.4 ENCODE dbSUPER 21 -0.2 -168 2.5 HNRNPUL1 PKNOX1 MLX CREB3L1 AGO1 ARID4B SIN3A FEZF1 DMAP1 YY1 FAM83D DHX35 SNORA60 ENSG00000261431
GH20G038936 0.9 ENCODE 27.8 -26.0 -25979 0.5 PKNOX1 RB1 FUS MLX ZFP64 SIN3A DMAP1 ZSCAN9 ZNF48 ZNF2 DHX35 FAM83D GC20M038952
GH20G039035 0.6 ENCODE 34.1 +74.3 74262 2.9 CREB3 ZNF791 RFX1 ELK1 NR4A1 NFE2L2 NR2F2 DHX35 FAM83D SNHG17 SNORA71C RN7SKP173 PIR38411 NPM1P19
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DHX35 on UCSC Golden Path with GeneCards custom track

Promoters for DHX35 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000137065 201 1801 HNRNPUL1 PKNOX1 MLX AGO1 ARID4B SIN3A FEZF1 DMAP1 YY1 SLC30A9

Genomic Location for DHX35 Gene

Chromosome:
20
Start:
38,962,299 bp from pter
End:
39,039,723 bp from pter
Size:
77,425 bases
Orientation:
Plus strand

Genomic View for DHX35 Gene

Genes around DHX35 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DHX35 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DHX35 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DHX35 Gene

Proteins for DHX35 Gene

  • Protein details for DHX35 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H5Z1-DHX35_HUMAN
    Recommended name:
    Probable ATP-dependent RNA helicase DHX35
    Protein Accession:
    Q9H5Z1
    Secondary Accessions:
    • A2RTX3
    • B4E0J0
    • F5GXM6
    • Q5THR0
    • Q9H4H7
    • Q9H6T6

    Protein attributes for DHX35 Gene

    Size:
    703 amino acids
    Molecular mass:
    78910 Da
    Quaternary structure:
    • Identified in the spliceosome C complex.
    SequenceCaution:
    • Sequence=BAB15166.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Alternative splice isoforms for DHX35 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DHX35 Gene

Selected DME Specific Peptides for DHX35 Gene

Q9H5Z1:
  • LDEAHERT
  • TQPRRVAA
  • AETSITI
  • FLTGQEE
  • CYRLYTE
  • DEAHERTL

Post-translational modifications for DHX35 Gene

  • Ubiquitination at isoforms=2326, Lys413, Lys435, and Lys591
  • Modification sites at PhosphoSitePlus

Domains & Families for DHX35 Gene

Gene Families for DHX35 Gene

Suggested Antigen Peptide Sequences for DHX35 Gene

Graphical View of Domain Structure for InterPro Entry

Q9H5Z1

UniProtKB/Swiss-Prot:

DHX35_HUMAN :
  • Belongs to the DEAD box helicase family. DEAH subfamily.
Family:
  • Belongs to the DEAD box helicase family. DEAH subfamily.
genes like me logo Genes that share domains with DHX35: view

Function for DHX35 Gene

Molecular function for DHX35 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O = ADP + phosphate.
UniProtKB/Swiss-Prot Function:
May be involved in pre-mRNA splicing.

Enzyme Numbers (IUBMB) for DHX35 Gene

Gene Ontology (GO) - Molecular Function for DHX35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0004004 ATP-dependent RNA helicase activity IBA --
GO:0004386 helicase activity IEA --
GO:0005524 ATP binding IEA --
GO:0008026 ATP-dependent helicase activity IEA --
genes like me logo Genes that share ontologies with DHX35: view
genes like me logo Genes that share phenotypes with DHX35: view

Animal Models for DHX35 Gene

MGI Knock Outs for DHX35:

Animal Model Products

  • Taconic Biosciences Mouse Models for DHX35

CRISPR Products

Inhibitory RNA Products

No data available for Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for DHX35 Gene

Localization for DHX35 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DHX35 gene
Compartment Confidence
nucleus 5
cytoskeleton 2

Gene Ontology (GO) - Cellular Components for DHX35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005681 spliceosomal complex IEA --
GO:0005737 cytoplasm IBA --
GO:0071013 catalytic step 2 spliceosome IDA 11991638
genes like me logo Genes that share ontologies with DHX35: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for DHX35 Gene

Pathways & Interactions for DHX35 Gene

SuperPathways for DHX35 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DHX35 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome IC 11991638
GO:0006396 RNA processing IBA --
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
genes like me logo Genes that share ontologies with DHX35: view

No data available for Pathways by source and SIGNOR curated interactions for DHX35 Gene

Drugs & Compounds for DHX35 Gene

(3) Drugs for DHX35 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
Adenosine triphosphate Approved Nutra 0

(1) Additional Compounds for DHX35 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
genes like me logo Genes that share compounds with DHX35: view

Transcripts for DHX35 Gene

Unigene Clusters for DHX35 Gene

DEAH (Asp-Glu-Ala-His) box polypeptide 35:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for DHX35 Gene

No ASD Table

Relevant External Links for DHX35 Gene

GeneLoc Exon Structure for
DHX35
ECgene alternative splicing isoforms for
DHX35

Expression for DHX35 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DHX35 Gene

Protein differential expression in normal tissues from HIPED for DHX35 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (34.8) and Placenta (13.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DHX35 Gene



Protein tissue co-expression partners for DHX35 Gene

NURSA nuclear receptor signaling pathways regulating expression of DHX35 Gene:

DHX35

SOURCE GeneReport for Unigene cluster for DHX35 Gene:

Hs.444520

Evidence on tissue expression from TISSUES for DHX35 Gene

  • Nervous system(4.6)
  • Intestine(4.2)
genes like me logo Genes that share expression patterns with DHX35: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for DHX35 Gene

Orthologs for DHX35 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for DHX35 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DHX35 34 35
  • 99 (n)
dog
(Canis familiaris)
Mammalia DHX35 34 35
  • 91.3 (n)
oppossum
(Monodelphis domestica)
Mammalia DHX35 35
  • 91 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DHX35 35
  • 91 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DHX35 34 35
  • 90.31 (n)
mouse
(Mus musculus)
Mammalia Dhx35 34 16 35
  • 88.35 (n)
rat
(Rattus norvegicus)
Mammalia Dhx35 34
  • 88.35 (n)
chicken
(Gallus gallus)
Aves DHX35 34 35
  • 79.77 (n)
lizard
(Anolis carolinensis)
Reptilia DHX35 35
  • 77 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dhx35 34
  • 73.9 (n)
zebrafish
(Danio rerio)
Actinopterygii DHX35 35
  • 77 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG3225 34 35
  • 54.59 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010872 34
  • 54.34 (n)
worm
(Caenorhabditis elegans)
Secernentea Y67D2.6 34 35
  • 56.68 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT4G18465 34
  • 54.98 (n)
rice
(Oryza sativa)
Liliopsida Os01g0212100 34
  • 54.17 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU06735 34
  • 55.17 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC20H4.09 34
  • 49.76 (n)
Species where no ortholog for DHX35 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DHX35 Gene

ENSEMBL:
Gene Tree for DHX35 (if available)
TreeFam:
Gene Tree for DHX35 (if available)

Paralogs for DHX35 Gene

Paralogs for DHX35 Gene

(11) SIMAP similar genes for DHX35 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with DHX35: view

Variants for DHX35 Gene

Sequence variations from dbSNP and Humsavar for DHX35 Gene

SNP ID Clin Chr 20 pos Sequence Context AA Info Type
rs1000097166 -- 39,008,064(+) GCTAC(C/T)AGTCC intron-variant
rs1000182806 -- 38,999,133(+) CAGTA(C/T)CACAT intron-variant
rs1000265905 -- 38,967,010(+) ATGAC(A/G)GTGCC intron-variant
rs1000267686 -- 39,013,480(+) TATCC(C/T)AAATC intron-variant
rs1000279986 -- 38,969,450(+) TTAGA(A/G)TGACT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DHX35 Gene

Variant ID Type Subtype PubMed ID
esv3645793 CNV gain 21293372
esv3645794 CNV loss 21293372
esv3645795 CNV gain 21293372
esv3645796 CNV loss 21293372
esv3645797 CNV gain 21293372
esv3645798 CNV loss 21293372
esv3645799 CNV loss 21293372
nsv833973 CNV loss 17160897
nsv979433 CNV duplication 23825009

Variation tolerance for DHX35 Gene

Residual Variation Intolerance Score: 15.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.71; 86.54% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DHX35 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DHX35

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DHX35 Gene

Disorders for DHX35 Gene

Relevant External Links for DHX35

Genetic Association Database (GAD)
DHX35
Human Genome Epidemiology (HuGE) Navigator
DHX35
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DHX35

No disorders were found for DHX35 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DHX35 Gene

Publications for DHX35 Gene

  1. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  3. Purification and characterization of native spliceosomes suitable for three-dimensional structural analysis. (PMID: 11991638) Jurica M.S. … Moore M.J. (RNA 2002) 3 4 64
  4. The DNA sequence and comparative analysis of human chromosome 20. (PMID: 11780052) Deloukas P. … Rogers J. (Nature 2001) 3 4 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for DHX35 Gene

Sources for DHX35 Gene

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