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Aliases for DHX33 Gene

Aliases for DHX33 Gene

  • DEAH (Asp-Glu-Ala-His) Box Polypeptide 33 2 3
  • DEAD/H (Asp-Glu-Ala-Asp/His) Box Polypeptide 33 2 3
  • DEAH Box Protein 33 3 4
  • DDX33 3 4
  • Putative ATP-Dependent RNA Helicase DHX33 3
  • EC 3.6.4.13 4
  • EC 3.6.1 63

External Ids for DHX33 Gene

Previous HGNC Symbols for DHX33 Gene

  • DDX33

Previous GeneCards Identifiers for DHX33 Gene

  • GC17M005292
  • GC17M005546
  • GC17M005286
  • GC17M005236
  • GC17M005360

Summaries for DHX33 Gene

Entrez Gene Summary for DHX33 Gene

  • This gene encodes a member of the DEAD box protein family. The DEAD box proteins are characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this DEAD box protein family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Dec 2010]

GeneCards Summary for DHX33 Gene

DHX33 (DEAH (Asp-Glu-Ala-His) Box Polypeptide 33) is a Protein Coding gene. GO annotations related to this gene include ATP-dependent helicase activity and rDNA binding. An important paralog of this gene is DHX35.

UniProtKB/Swiss-Prot for DHX33 Gene

  • Stimulates RNA polymerase I transcription of the 47S precursor rRNA. Associates with ribosomal DNA (rDNA) loci where it is involved in POLR1A recruitment. Important element of nucleolar organization.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DHX33 Gene

Genomics for DHX33 Gene

Regulatory Elements for DHX33 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for DHX33 Gene

Start:
5,440,912 bp from pter
End:
5,469,060 bp from pter
Size:
28,149 bases
Orientation:
Minus strand

Genomic View for DHX33 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DHX33 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DHX33 Gene

Proteins for DHX33 Gene

  • Protein details for DHX33 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H6R0-DHX33_HUMAN
    Recommended name:
    Putative ATP-dependent RNA helicase DHX33
    Protein Accession:
    Q9H6R0
    Secondary Accessions:
    • B4DHF9
    • Q4G149
    • Q5CZ73
    • Q9H5M9

    Protein attributes for DHX33 Gene

    Size:
    707 amino acids
    Molecular mass:
    78874 Da
    Quaternary structure:
    • Interacts with UBTF.
    SequenceCaution:
    • Sequence=AAH30017.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for DHX33 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DHX33 Gene

Proteomics data for DHX33 Gene at MOPED

Selected DME Specific Peptides for DHX33 Gene

Post-translational modifications for DHX33 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DHX33 Gene

Domains for DHX33 Gene

Gene Families for DHX33 Gene

HGNC:
  • DHX :DEAH-boxes

Suggested Antigen Peptide Sequences for DHX33 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9H6R0

UniProtKB/Swiss-Prot:

DHX33_HUMAN :
  • Q9H6R0
Domain:
  • Contains 1 helicase ATP-binding domain.
  • Contains 1 helicase C-terminal domain.
Family:
  • Belongs to the DEAD box helicase family. DEAH subfamily.
genes like me logo Genes that share domains with DHX33: view

Function for DHX33 Gene

Molecular function for DHX33 Gene

UniProtKB/Swiss-Prot CatalyticActivity: ATP + H(2)O = ADP + phosphate
UniProtKB/Swiss-Prot Function: Stimulates RNA polymerase I transcription of the 47S precursor rRNA. Associates with ribosomal DNA (rDNA) loci where it is involved in POLR1A recruitment. Important element of nucleolar organization.

Enzyme Numbers (IUBMB) for DHX33 Gene

Gene Ontology (GO) - Molecular Function for DHX33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000182 rDNA binding IDA 21930779
GO:0003676 nucleic acid binding --
GO:0004004 ATP-dependent RNA helicase activity IBA --
GO:0004386 helicase activity --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with DHX33: view

Phenotypes for DHX33 Gene

GenomeRNAi human phenotypes for DHX33:
genes like me logo Genes that share phenotypes with DHX33: view

Animal Model Products

CRISPR Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for DHX33 Gene

Localization for DHX33 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DHX33 Gene

Nucleus, nucleolus. Nucleus, nucleoplasm. Note=Predominantly in the nucleolus. During mitosis, localizes with the nucleolar organizing regions.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DHX33 Gene COMPARTMENTS Subcellular localization image for DHX33 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for DHX33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA 21930779
GO:0005730 nucleolus IDA 21930779
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with DHX33: view

Pathways for DHX33 Gene

SuperPathways for DHX33 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DHX33 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0006396 RNA processing IBA --
GO:0008152 metabolic process --
GO:0045943 positive regulation of transcription from RNA polymerase I promoter IDA 21930779
genes like me logo Genes that share ontologies with DHX33: view

No data available for Pathways by source for DHX33 Gene

Transcripts for DHX33 Gene

Unigene Clusters for DHX33 Gene

DEAH (Asp-Glu-Ala-His) box polypeptide 33:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DHX33

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for DHX33

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DHX33 Gene

No ASD Table

Relevant External Links for DHX33 Gene

GeneLoc Exon Structure for
DHX33
ECgene alternative splicing isoforms for
DHX33

Expression for DHX33 Gene

mRNA expression in normal human tissues for DHX33 Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DHX33 Gene

SOURCE GeneReport for Unigene cluster for DHX33 Gene Hs.250456

genes like me logo Genes that share expressions with DHX33: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for DHX33 Gene

Orthologs for DHX33 Gene

This gene was present in the common ancestor of animals.

Orthologs for DHX33 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DHX33 35
  • 99.48 (n)
  • 99.58 (a)
DHX33 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DHX33 36
  • 91 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DHX33 35
  • 85.97 (n)
  • 90.86 (a)
DHX33 36
  • 91 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dhx33 35
  • 90.26 (n)
  • 93.55 (a)
Dhx33 16
Dhx33 36
  • 94 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia DHX33 36
  • 81 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 72 (a)
OneToMany
-- 36
  • 72 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Dhx33 35
  • 90.59 (n)
  • 94.41 (a)
chicken
(Gallus gallus)
Aves DHX33 35
  • 79.18 (n)
  • 86.14 (a)
lizard
(Anolis carolinensis)
Reptilia DHX33 36
  • 76 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.6757 35
tropical clawed frog
(Silurana tropicalis)
Amphibia dhx33 35
  • 74.08 (n)
  • 80 (a)
Str.4876 35
zebrafish
(Danio rerio)
Actinopterygii DHX33 36
  • 73 (a)
OneToOne
LOC796505 35
  • 69.51 (n)
  • 73.53 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP006138 35
  • 54.46 (n)
  • 48.25 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG4901 35
  • 51.79 (n)
  • 46.49 (a)
CG4901 36
  • 44 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea T05E8.3 36
  • 30 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2140 35
Species with no ortholog for DHX33:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DHX33 Gene

ENSEMBL:
Gene Tree for DHX33 (if available)
TreeFam:
Gene Tree for DHX33 (if available)

Paralogs for DHX33 Gene

Paralogs for DHX33 Gene

Selected SIMAP similar genes for DHX33 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with DHX33: view

Variants for DHX33 Gene

Sequence variations from dbSNP and Humsavar for DHX33 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type MAF
rs1476561 -- 5,449,199(+) AAAAA(C/T)ATGAA intron-variant
rs1805430 -- 5,467,367(+) aagta(G/T)ccaga intron-variant
rs1805439 -- 5,465,424(+) CAGGG(A/C)AACAG intron-variant
rs1805440 -- 5,465,909(+) AGTGC(A/G)CCATC intron-variant
rs1805441 -- 5,470,243(+) TTTGC(C/T)CCAGG upstream-variant-2KB

Relevant External Links for DHX33 Gene

HapMap Linkage Disequilibrium report
DHX33

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for DHX33 Gene

Disorders for DHX33 Gene

Relevant External Links for DHX33

Genetic Association Database (GAD)
DHX33
Human Genome Epidemiology (HuGE) Navigator
DHX33
genes like me logo Genes that share disorders with DHX33: view

No data available for UniProtKB/Swiss-Prot for DHX33 Gene

Publications for DHX33 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  3. Risk of meningioma and common variation in genes related to innate immunity. (PMID: 20406964) Rajaraman P. … Inskip P.D. (Cancer Epidemiol. Biomarkers Prev. 2010) 3 48
  4. Polymorphisms in innate immunity genes and risk of childhood leukemia. (PMID: 20438785) Han S. … Kang D. (Hum. Immunol. 2010) 3 48
  5. Identification of DHX33 as a mediator of rRNA synthesis and cell growth. (PMID: 21930779) Zhang Y. … Weber J.D. (Mol. Cell. Biol. 2011) 3 4

Products for DHX33 Gene

Sources for DHX33 Gene

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