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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DHRS7 Gene

protein-coding   GIFtS: 50
GCID: GC14M060610

dehydrogenase/reductase (SDR family) member 7

 Explore 4 diseases affiliated with
DHRS7 via our new
 Human Malady Compendium 
Biological research products
for DHRS7
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Dehydrogenase/Reductase (SDR Family) Member 71 2     RETSDR43 5
SDR34C11 2     Dehydrogenase/Reductase SDR Family Member 72
RetDSR41     Short Chain Dehydrogenase/Reductase Family 34C, Member 12
Retinal Short-Chain Dehydrogenase/Reductase 42 3     DHRS7A3
RetSDR41     EC 1.1.-.-3

External Ids:    HGNC: 215241   Entrez Gene: 516352   Ensembl: ENSG000001006127   OMIM: 6128335   UniProtKB: Q9Y3943   

Export aliases for DHRS7 gene to outside databases

Previous GC identifers: GC14M058602 GC14M058603 GC14M059681 GC14M040775


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for DHRS7:
Short-chain dehydrogenases/reductases (SDRs), such as DHRS7, catalyze the oxidation/reduction of a wide range of
substrates, including retinoids and steroids (Haeseleer and Palczewski, 2000 (PubMed 10800688)).(supplied by OMIM, Jun
2009)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000014.8  NC_018925.1  NT_026437.12  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DHRS7 gene promoter:
         TBP   POU2F2 (Oct-2.1)   Oct-B1   oct-B3   oct-B2   POU2F2   POU2F2C   POU2F1   POU2F1a   POU2F2B   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidDHRS7 promoter sequence
   Search SABiosciences Chromatin IP Primers for DHRS7

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DHRS7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q23.1   Ensembl cytogenetic band:  14q23.1   HGNC cytogenetic band: 14q23.1

DHRS7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DHRS7 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14M060610:  view genomic region     (about GC identifiers)

Start:
60,610,838 bp from pter      End:
60,636,574 bp from pter
Size:
25,737 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: DHRS7_HUMAN, Q9Y394 (See protein sequence)
Recommended Name: Dehydrogenase/reductase SDR family member 7 precursor  
Size: 339 amino acids; 38299 Da
Secondary accessions: B2R896 Q9UKU2
Alternative splicing: 2 isoforms:  Q9Y394-1   Q9Y394-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for DHRS7: NX_Q9Y394

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9Y394

  • DHRS7 Protein expression data from MOPED and PaxDb:    About this image 
    DHRS7 Protein Expression
    REFSEQ proteins: NP_057113.1  
    ENSEMBL proteins: 
     ENSP00000216500   ENSP00000452026   ENSP00000442993   ENSP00000450899   ENSP00000451321  
     ENSP00000452375   ENSP00000451882  

    Human Recombinant Protein Products for DHRS7: 
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    Uscn Proteins for DHRS7


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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    DHRS7 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR020904 Sc_DH/Rdtase_CS
     IPR016040 NAD(P)-bd_dom
     IPR002347 Glc/ribitol_DH
     IPR002198 DH_sc/Rdtase_SDR

    Graphical View of Domain Structure for InterPro Entry Q9Y394

    ProtoNet protein and cluster: Q9Y394

    1 Blocks protein family: IPB002198 Short-chain dehydrogenase/reductase SDR

    UniProtKB/Swiss-Prot: DHRS7_HUMAN, Q9Y394
    Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

         Enzyme Number (IUBMB): EC 1.1.-.-1

         Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0000166nucleotide binding IEA--
    GO:0016491oxidoreductase activity IEA--
         
    DHRS7 for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for DHRS7:
     G0/1 arrest  Increased G1 DNA content  Synthetic lethal with c-Myc af 

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for DHRS7 

    miRNA
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    Inhib. RNA
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    In Situ Assay
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DHRS7

    STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

    4 Interacting proteins for DHRS7 (Q9Y3943 ENSP000002165004) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    RICTORQ6R3273I2D: score=1 
    RPS9P467813I2D: score=1 
    UBCENSP000003448184STRING: ENSP00000344818
    ETV5ENSP000003068944STRING: ENSP00000306894
    About this table

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DHRS7
    Search CenterWatch for drugs/clinical trials and news about DHRS7 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for DHRS7 gene: 
    NM_016029.2  

    Unigene Cluster for DHRS7:

    Dehydrogenase/reductase (SDR family) member 7
    Hs.59719  [show with all ESTs]
    Unigene Representative Sequence: BU541074
    11 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000216500(uc001xes.3 uc001xet.3) ENST00000557751 ENST00000536410
    ENST00000554101 ENST00000553986 ENST00000557137 ENST00000556502 ENST00000555171
    ENST00000557326 ENST00000553328 ENST00000557185

    miRNA
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    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat DHRS7
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    SwitchGear 3'UTR luciferase reporter plasmidDHRS7 3' UTR sequence
    Inhib. RNA
    Products:
         
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DHRS7 (see all 7)
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    Additional cDNA sequence: 

    AF126782.1 AF151844.1 AK313285.1 AL117420.1 AY359031.1 BC000637.2 BC007337.2 

    11 DOTS entries:

    DT.456185  DT.100807010  DT.95186383  DT.120745789  DT.75142986  DT.95186386  DT.75157387  DT.95186380 
    DT.120745766  DT.120745862  DT.86854156 

    24/386 AceView cDNA sequences (see all 386):

    AI433414 BQ674782 AI253091 BQ640424 AI285472 BI752864 BM055179 AA883522 
    CR624637 BQ276464 BM695968 BM449453 AL599496 AI697738 BF512645 AI332904 
    BM466818 AI282366 AI824932 CB135529 AA017652 BG055064 N93481 BQ028664 

    GeneLoc Exon Structure

    5/6 Alternative Splicing Database (ASD) splice patterns (SP) for DHRS7 (see all 6)    About this scheme

    ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9
    SP1:                    -     -     -           -                 -                           
    SP2:                                            -                 -                           
    SP3:                                            -           -                                 
    SP4:                                                                                          
    SP5:                                                                                          


    ECgene alternative splicing isoforms for DHRS7

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DHRS7 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AATCTTGCAA
    DHRS7 Expression
    About this image

    DHRS7 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    2 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BrainHypothalamusBrain
    HeartDorsal MesocardiumHeart
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See DHRS7 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DHRS7

    SOURCE GeneReport for Unigene cluster: Hs.59719
        SABiosciences Custom PCR Arrays for DHRS7
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DHRS7

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for DHRS7 gene from 7/24 species (see all 24)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves DHRS71 dehydrogenase/reductase (SDR family) member 7 71.38(n)
    69.54(a)
      423527  XM_421423.3  XP_421423.2 
    lizard
    (Anolis carolinensis)
    Reptilia DHRS76
    --
    66(a)
    1 ↔ 1
    GL343261.1(1170550-1187720)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.189672 Xenopus laevis transcribed sequence with weak similarity more 73.9(n)    BG410026.1 
    zebrafish
    (Danio rerio)
    Actinopterygii dhrs71 dehydrogenase/reductase (SDR family) member 7 60.14(n)
    60.84(a)
      751626  NM_001045346.1  NP_001038811.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG319371 CG31937 47.29(n)
    37.01(a)
      326177  NM_134772.3  NP_608616.2 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT3G033301 Rossmann-fold NAD(P)-binding domain-containing protein 49.28(n)
    41.47(a)
      821281  NM_111204.4  NP_186983.2 
    rice
    (Oryza sativa)
    Liliopsida Os11g02654001 hypothetical protein 44.95(n)
    36.27(a)
      4350245  NM_001074191.1  NP_001067659.1 


    ENSEMBL Gene Tree for DHRS7 (if available)
    TreeFam Gene Tree for DHRS7 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for DHRS7 gene
    SDR9C72  DHRS92  HSD11B22  HSD17B62  HSD17B22  BDH12  RDH82  RDH162  
    DHRS7B2  HSD17B12  KDSR2  DHRS7C2  RDH52  
    5 SIMAP similar genes for DHRS7 using alignment to 5 protein entries:     DHRS7_HUMAN (see all proteins):
    DKFZp564H1664    BDH1    DHRS3    DHRS7B    DHRS4L2

    DHRS7 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/411 NCBI SNPs in DHRS7 are shown (see all 411    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1995304261,2
    C--60611059(+) TTTTTG/TTCCCC 1 -- int10--------
    rs1150032771,2
    F--60611194(+) TCTGTC/TCCTTC 1 -- int11Minor allele frequency- T:0.03WA 118
    rs1914229581,2
    --60611249(+) ATGAGG/TTGCCA 1 -- int10--------
    rs3812371,2
    C,F,A--60611393(-) TTGTGC/TTGCTA 1 -- int18Minor allele frequency- T:0.32WA NA CSA EA 369
    rs777842111,2
    F--60611455(+) ATTTTA/GAAAGG 1 -- int11Minor allele frequency- G:0.03NA 120
    rs1124925571,2
    F--60611521(+) AATCTC/TTTATT 1 -- ut311Minor allele frequency- T:0.50CSA 6
    rs4098661,2
    C,F,O,A,H--60611528(-) AATAAA/GTAATA 1 -- ut3122Minor allele frequency- G:0.35MN NS EA NA WA CSA 2527
    rs4393321,2
    C,F,O,A,H--60611585(-) TTGTGA/GTTTTA 1 -- ut3125Minor allele frequency- G:0.29MN NS EA NA WA CSA EU 3262
    rs3995351,2
    C,F,O,A,H--60611648(-) AGGGAA/GAAATG 1 -- ut31 trp326Minor allele frequency- N:0.00EA NA NS WA CSA EU 3871
    rs776317251,2
    --60611664(+) GGCTTG/TAAAAG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for DHRS7 (60610838 - 60636574 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for DHRS7: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DHRS7
    DNA2.0 Custom Variant and Variant Library Synthesis for DHRS7

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    DHRS7 for disorders           About GeneDecksing

    OMIM gene information: 612833    OMIM disorders: --

    4 diseases for DHRS7:    About MalaCards
    retinitis    pneumonia    tuberculosis    mycobacterium tuberculosis


    Export disorders for DHRS7 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DHRS7 gene, integrated from 9 sources (see all 14):
    (articles sorted by number of sources associating them with DHRS7)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Short-chain dehydrogenases/reductases in retina. (PubMed id 10800688)1, 2, 3 Haeseleer F. and Palczewski K. (2000)
    2. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PubMed id 10810093)1, 2, 3 Lai C.H....Lin W. (2000)
    3. The SDR (short-chain dehydrogenase/reductase and related enzymes) nomenclature initiative. (PubMed id 19027726)1, 3 Persson B.... Oppermann U. (2009)
    4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    5. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (2003)
    6. The secreted protein discovery initiative (SPDI), a large-scale effort to identify novel human secreted and transmembrane proteins: a bioinformatics assessment. (PubMed id 12975309)1, 2 Clark H.F.... Gray A.M. (2003)
    7. Proteome-wide identification of ubiquitylation sites b y conjugation of engineered lysine-less ubiquitin. (PubMed id 22053931)1 Oshikawa K....Nakayama K.I. (2012)
    8. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    9. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    10. A genome-wide meta-analysis of genetic variants associ ated with allergic rhinitis and grass sensitization and their interaction with b irth order. (PubMed id 22036096)1 Ramasamy A....Jarvis D.L. (2011)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 51635 HGNC: 21524 AceView: DHRS7 Ensembl:ENSG00000100612 euGenes: HUgn51635
    ECgene: DHRS7 H-InvDB: DHRS7

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DHRS7 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for DHRS7 gene:
    Search GeneIP for patents involving DHRS7

    GeneCards and IP:
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