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DHCR7 Gene

protein-coding   GIFtS: 71
GCID: GC11M071145

7-Dehydrocholesterol Reductase

(Previous name: Smith-Lemli-Opitz syndrome)
(Previous symbol: SLOS)
  See DHCR7-related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
7-Dehydrocholesterol Reductase1 2     Delta-7-Dehydrocholesterol Reductase2
SLOS1 2 5     Sterol Delta-7-Reductase2
Putative Sterol Reductase SR-22 3     D7SR3
7-DHC Reductase2 3     Sterol Delta(7)-Reductase3
EC 1.3.1.213 8     EC 1.3.18
Smith-Lemli-Opitz Syndrome1     

External Ids:    HGNC: 28601   Entrez Gene: 17172   Ensembl: ENSG000001728937   OMIM: 6028585   UniProtKB: Q9UBM73   

Export aliases for DHCR7 gene to outside databases

Previous GC identifers: GC11M073477 GC11M072685 GC11M071368 GC11M070871 GC11M070823 GC11M067439


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for DHCR7 Gene:
This gene encodes an enzyme that removes the C(7-8) double bond in the B ring of sterols and catalyzes the
conversion of 7-dehydrocholesterol to cholesterol. This gene is ubiquitously expressed and its transmembrane
protein localizes to the endoplasmic reticulum membrane and nuclear outer membrane. Mutations in this gene cause
Smith-Lemli-Opitz syndrome (SLOS); a syndrome that is metabolically characterized by reduced serum cholesterol
levels and elevated serum 7-dehydrocholesterol levels and phenotypically characterized by mental retardation,
facial dysmorphism, syndactyly of second and third toes, and holoprosencephaly in severe cases to minimal
physical abnormalities and near-normal intelligence in mild cases. Alternative splicing results in multiple
transcript variants that encode the same protein.(provided by RefSeq, Aug 2009)

GeneCards Summary for DHCR7 Gene:
DHCR7 (7-dehydrocholesterol reductase) is a protein-coding gene. Diseases associated with DHCR7 include smith-lemli-opitz syndrome, and syndactyly. GO annotations related to this gene include 7-dehydrocholesterol reductase activity. An important paralog of this gene is LBR.

UniProtKB/Swiss-Prot: DHCR7_HUMAN, Q9UBM7
Function: Production of cholesterol by reduction of C7-C8 double bond of 7-dehydrocholesterol (7-DHC)

summary for DHCR7 Gene:
Delta7-Dehydrocholesterol reductase (DHCR) is a membrane-bound enzyme that catalyzes the final step of
cholesterol biosynthesis (the reduction of the C7-8 double bond in 7-dehydrocholesterol to form
cholesterol), using NADPH as a cofactor. Cholesterol is a vital component in biological membranes and in
myelin and is necessary for the synthesis of steroid hormones and bile acids. DHCR is ubiquitously expressed
and its highest concentrations are found in the liver and brain. Autosomal recessive mutations in the DHCR7
gene have been linked to Smith-Lemli-Opitz syndrome, an inherited disease causing multiple congenital
abnormalities linked to defects in cholesterol biosynthesis. The human gene encoding this enzyme is
localized to 11q12-13.

Gene Wiki entry for DHCR7 (7-Dehydrocholesterol reductase) Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000011.9  NC_018922.2  NT_167190.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the DHCR7 gene promoter:
         SRF   NF-1   NF-1/L   GATA-3   SRF (504 AA)   GATA-1   GATA-2   YY1   HOXA5   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): DHCR7 promoter sequence
   Search Chromatin IP Primers for DHCR7

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat DHCR7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11q13.4   Ensembl cytogenetic band:  11q13.4   HGNC cytogenetic band: 11q13.4

DHCR7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DHCR7 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M071145:  view genomic region     (about GC identifiers)

Start:
71,139,239 bp from pter      End:
71,163,914 bp from pter
Size:
24,676 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: DHCR7_HUMAN, Q9UBM7 (See protein sequence)
Recommended Name: 7-dehydrocholesterol reductase  
Size: 475 amino acids; 54489 Da
Secondary accessions: B2R6Z2 O60492 O60717

Explore the universe of human proteins at neXtProt for DHCR7: NX_Q9UBM7

Explore proteomics data for DHCR7 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys13, Lys88
  • Modification sites at PhosphoSitePlus
  • Selected DME Specific Peptides for DHCR7 (Q9UBM7) (see all 11)
     HLLPYFY  MGIEFNP  FIMACDQY  DNWIPLLWC 


    See DHCR7 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001157289.1  NP_001351.2  

    ENSEMBL proteins: 
     ENSP00000432256   ENSP00000384739   ENSP00000347717   ENSP00000435011   ENSP00000435956  
     ENSP00000435047   ENSP00000435668   ENSP00000435707   ENSP00000432589   ENSP00000435058  
     ENSP00000436007  
    Reactome Protein details: Q9UBM7

    DHCR7 Human Recombinant Protein Products:

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    OriGene Protein Over-expression Lysate for DHCR7
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    Novus Biologicals DHCR7 Protein
    Novus Biologicals DHCR7 Lysates
    Browse Sino Biological Recombinant Proteins
    Browse Sino Biological Cell Lysates
    Browse ProSpec Recombinant Proteins
    Cloud-Clone Corp. Proteins for DHCR7

     
    Search eBioscience for Proteins for DHCR7 

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    LSBio Antibodies in human, mouse, rat for DHCR7

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    Search eBioscience for ELISAs for DHCR7 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    2 InterPro protein domains:
     IPR001171 Ergosterol_biosynth_ERG4_ERG24
     IPR018083 Sterol_reductase_CS

    Graphical View of Domain Structure for InterPro Entry Q9UBM7

    ProtoNet protein and cluster: Q9UBM7

    2 Blocks protein domains:
    IPB001171 ERG4/ERG24 ergosterol biosynthesis protein
    IPB011024 Gamma-crystallin related


    UniProtKB/Swiss-Prot: DHCR7_HUMAN, Q9UBM7
    Similarity: Belongs to the ERG4/ERG24 family


    Find genes that share domains with DHCR7           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DHCR7_HUMAN, Q9UBM7
    Function: Production of cholesterol by reduction of C7-C8 double bond of 7-dehydrocholesterol (7-DHC)
    Catalytic activity: Cholesterol + NADP(+) = cholesta-5,7-dien-3-beta-ol + NADPH

         Genatlas biochemistry entry for DHCR7:
    delta 7-dehydrocholesterol reductase,located in the endoplasmic reticulum and continuous outer nuclear
    membrane,ubiquitously expressed,most abundant in adrenals,liver,testis,brain,LBR superfamily,catalyzing the
    ultimate step of cholesterol biosynthesis,deficient in SLOS

         Enzyme Numbers (IUBMB): EC 1.3.1.211 2 EC 1.3.12

         Gene Ontology (GO): 2 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016628oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor ----
    GO:00475987-dehydrocholesterol reductase activity IDA9465114
         
    Find genes that share ontologies with DHCR7           About GenesLikeMe


    Phenotypes:
         2 GenomeRNAi human phenotypes for DHCR7:
     Decreased viability  Upregulation of Wnt/beta-caten 

         13 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Dhcr7):
     behavior/neurological  cardiovascular system  craniofacial  digestive/alimentary  growth/size/body 
     homeostasis/metabolism  limbs/digits/tail  liver/biliary system  mortality/aging  muscle 
     nervous system  renal/urinary system  respiratory system 

    Find genes that share phenotypes with DHCR7           About GenesLikeMe

    Animal Models:
         MGI mouse knock-outs for DHCR7: Dhcr7tm1Gst Dhcr7tm1Fdp

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for DHCR7
       inGenious Targeting Laboratory: Contact us about creating complex and humanized mouse models for DHCR7

       genOway customized KO model: permanent, tissue-specific or time-controlled inactivation for DHCR7
       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for DHCR7

    miRNA
    Products:
        
    miRTarBase miRNAs that target DHCR7:
    hsa-mir-335-5p (MIRT016982), hsa-mir-425-5p (MIRT016653), hsa-mir-34a-5p (MIRT025254), hsa-mir-1260b (MIRT052760)

    Block miRNA regulation of human, mouse, rat DHCR7 using miScript Target Protectors
    Search for qRT-PCR Assays for microRNAs that regulate DHCR7
    SwitchGear 3'UTR luciferase reporter plasmidDHCR7 3' UTR sequence
    Inhib. RNA
    Products:
        
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    Predesigned siRNA for gene silencing in human, mouse, rat DHCR7

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    Clone
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    OriGene ORF clones in mouse, rat for DHCR7
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector (see first 1): DHCR7 (NM_001360  NM_001163817)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for DHCR7
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DHCR7

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    Browse ESI BIO Cell Lines and PureStem Progenitors for DHCR7 
    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DHCR7


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from UniProtKB/Swiss-Prot
    DHCR7_HUMAN, Q9UBM7: Endoplasmic reticulum membrane; Multi-pass membrane protein
    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    endoplasmic reticulum5
    nucleus5
    plasma membrane3

    Gene Ontology (GO): Selected cellular component terms (see all 6):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005640nuclear outer membrane IDA9878250
    GO:0005783endoplasmic reticulum IDA9878250
    GO:0005789endoplasmic reticulum membrane TAS--
    GO:0016020membrane ----
    GO:0016021integral component of membrane IEA--

    Find genes that share ontologies with DHCR7           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    SuperPaths for DHCR7 About    
    See pathways by source

    SuperPathContained pathways About
    1superpathway of cholesterol biosynthesis
    superpathway of cholesterol biosynthesis0.85
    Steroid biosynthesis0.57
    Cholesterol biosynthesis0.85
    cholesterol biosynthesis I0.00
    Cholesterol biosynthesis0.62
    cholesterol biosynthesis III (via desmosterol)0.00
    cholesterol biosynthesis II (via 24,25-dihydrolanosterol)0.59
    2Metabolism
    Metabolism0.38
    Metabolism of lipids and lipoproteins0.37
    Metabolic pathways0.38
    3Regulation of Cholesterol Biosynthesis by SREBP (SREBF)
    Regulation of Cholesterol Biosynthesis by SREBP (SREBF)0.75
    Activation of Gene Expression by SREBP (SREBF)0.75


    Find genes that share SuperPaths with DHCR7           About GenesLikeMe

    Pathways by source                                                                                                                                                                 See SuperPaths
    Show all pathways


    5 BioSystems Pathways for DHCR7
        Cholesterol biosynthesis
    cholesterol biosynthesis I
    superpathway of cholesterol biosynthesis
    cholesterol biosynthesis II (via 24,25-dihydrolanosterol)
    cholesterol biosynthesis III (via desmosterol)

    2 Reactome Pathways for DHCR7
        Cholesterol biosynthesis
    Activation of gene expression by SREBF (SREBP)


    2 Kegg Pathways  (Kegg details for DHCR7):
        Steroid biosynthesis
    Metabolic pathways

    UniProtKB/Swiss-Prot: DHCR7_HUMAN, Q9UBM7
    Pathway: Steroid biosynthesis; cholesterol biosynthesis

        Pathway & Disease-focused RT2 Profiler PCR Array including DHCR7: 

              Lipoprotein Signaling & Cholesterol Metabolism in human mouse rat

    Interactions:

        Search GeneGlobe Interaction Network for DHCR7

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for DHCR7 (Q9UBM72, 3 ENSP000003477174) via UniProtKB, MINT, STRING, and/or I2D (see all 183)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    UBCP0CG482, 3, ENSP000003448184MINT-6489355 I2D: score=1 STRING: ENSP00000344818
    AGO2Q9UKV82, ENSP000002205924MINT-6489217 MINT-6489355 STRING: ENSP00000220592
    FADS1O604273, ENSP000003222294I2D: score=2 STRING: ENSP00000322229
    NDNQ996083, ENSP000003326434I2D: score=2 STRING: ENSP00000332643
    ACP6Q9NPH03, ENSP000003582414I2D: score=1 STRING: ENSP00000358241
    About this table

    Gene Ontology (GO): Selected biological process terms (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001568blood vessel development IEA--
    GO:0006695cholesterol biosynthetic process TAS--
    GO:0009791post-embryonic development IEA--
    GO:0016126sterol biosynthetic process ----
    GO:0030154cell differentiation IEA--

    Find genes that share ontologies with DHCR7           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Compounds for DHCR7 available from Tocris Bioscience    About this table
    CompoundAction CAS #
    AY 9944 dihydrochlorideInhibitor of Hedgehog (Hh) signaling. Inhibits delta7-dehydrocholesterol reductase[366-93-8]

    10 HMDB Compounds for DHCR7    About this table
    CompoundSynonyms CAS #PubMed Ids
    7-Dehydrocholesterol(-)-7-dehydrocholesterol (see all 26)434-16-218285838
    24-Methylenecholesterol(3b)-Ergosta-5,24(28)-dien-3-ol (see all 8)474-63-5--
    5-Dehydroavenasterol ----
    5-DehydroepisterolErgosta-5,7,24(28)-trien-3beta-ol (see all 2)23582-83-4--
    AvenasterolIsofucosterol (see all 10)481-14-1--
    Cholesterol(+)-ent-Cholesterol (see all 39)57-88-5--
    NAD3-Carbamoyl-1-D-ribofuranosylpyridinium hydroxide 5'-ester with adenosine 5'-pyrophosphate (see all 28)53-84-9--
    NADH1,4-Dihydronicotinamide adenine dinucleotide (see all 17)58-68-4--
    NADPAdenine-nicotinamide dinucleotide phosphate (see all 18)53-59-8--
    NADPH2'-(dihydrogen phosphate) 5'-(trihydrogen pyrophosphate) Adenosine 5'-ester with 1,4-dihydro-1-b-D-ribofuranosylnicotinamide (see all 23)53-57-6--

    1 DrugBank Compound for DHCR7    About this table
    CompoundSynonyms CAS #TypeActionsPubMed Ids
    NADHbeta-DPNH (see all 18)606-68-8target--17139284 17016423

    Selected Novoseek inferred chemical compound relationships for DHCR7 gene (see all 12)    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    7-dehydrocholesterol 98.3 159 9683613 (4), 16814115 (3), 9634533 (3), 20014133 (3) (see all 73)
    8-dehydrocholesterol 93.4 7 19406241 (1), 18249054 (1), 12949967 (1), 11352988 (1)
    3beta-hydroxysterol 92.3 6 16392899 (1), 11001807 (1), 11562938 (1), 16446309 (1) (see all 6)
    ay9944 84.6 7 8987154 (2), 9358606 (2), 16814115 (1)
    sterol 80.2 22 9634533 (4), 11001806 (2), 19940018 (2), 9683613 (1) (see all 10)
    cholesterol 76 135 17408495 (4), 20014133 (3), 16687448 (3), 18951487 (2) (see all 66)
    desmosterol 59.4 1 16207203 (1)
    squalene 53.1 8 18951487 (2), 15143536 (1)
    ergosterol 43.9 2 10719329 (1), 15464432 (1)
    simvastatin 42.8 3 15896653 (2), 19365639 (1)



    Find genes that share compounds with DHCR7           About GenesLikeMe



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for DHCR7 gene (2 alternative transcripts): 
    NM_001163817.1  NM_001360.2  

    Unigene Cluster for DHCR7:

    7-dehydrocholesterol reductase
    Hs.503134  [show with all ESTs]
    Unigene Representative Sequence: NM_001360
    12 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000534795 ENST00000407721 ENST00000355527(uc001oqk.3 uc001oql.3)
    ENST00000533800 ENST00000525137 ENST00000527316 ENST00000534701 ENST00000526780
    ENST00000525346 ENST00000531364 ENST00000529990 ENST00000527452
    miRNA
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    GenScript: all cDNA clones in your preferred vector (see all 2): DHCR7 (NM_001360)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for DHCR7
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DHCR7
    Primer
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    OriGene qPCR primer pairs and template standards for DHCR7
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      QuantiTect SYBR Green Assays in human, mouse, rat DHCR7
      QuantiFast Probe-based Assays in human, mouse, rat DHCR7

    Additional mRNA sequence: 

    AF034544.1 AF062481.1 AF067127.1 AF096305.1 AK289497.1 AK303881.1 AK309625.1 AK312775.1 
    BC000054.2 

    19 DOTS entries:

    DT.100647914  DT.418224  DT.100647904  DT.95326177  DT.100647915  DT.120742723  DT.100671595  DT.120742731 
    DT.91758253  DT.95181639  DT.95357168  DT.100033172  DT.100647913  DT.120742718  DT.40108063  DT.95290620 
    DT.95357178  DT.100837843  DT.95357166 

    Selected AceView cDNA sequences (see all 440):

    AL044893 BM560287 BI835977 CR605911 AA343352 BG386167 AW249784 CD672136 
    CA454504 AA364447 BU846251 AU125589 AA861245 AA282516 BE799908 BU684875 
    AA070075 BU931469 BU848891 CR609879 AI610807 AI192049 AA834440 AL118630 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for DHCR7 (see all 11)    About this scheme

    ExUns: 1a · 1b · 1c · 1d · 1e · 1f ^ 2a · 2b · 2c ^ 3a · 3b ^ 4a · 4b · 4c · 4d · 4e ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b
    SP1:                          -     -     -                             -                       -                                         -               
    SP2:                                -     -                             -                       -                                         -               
    SP3:                                -     -                             -                       -                                                         
    SP4:                                -     -                             -     -                 -                                                         
    SP5:                                -     -                             -                                                                                 


    ECgene alternative splicing isoforms for DHCR7

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    DHCR7 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TCGTTTCCTT
    DHCR7 Expression
    About this image


    DHCR7 expression in embryonic tissues and stem cells    About this table
    Data from LifeMap, the Embryonic Development and Stem Cells Database
     selected tissues (see all 7) fully expand
     
     Brain (Nervous System)    fully expand to see all 4 entries
             Cerebral Cortex
     
     Ovary (Reproductive System)    fully expand to see all 2 entries
             Ovarian Mesenchymal Stroma Cells Ovary Interstitium
             Oviduct
     
     Trophoblast (Extraembryonic Tissues)
             Trophoblast Cells Trophoblast
     
     Pancreas (Endocrine System)
             Islets of Langerhans
     
     Testis (Reproductive System)
             Leydig Cells Testis Interstitium
    DHCR7 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    DHCR7 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.503134

    UniProtKB/Swiss-Prot: DHCR7_HUMAN, Q9UBM7
    Tissue specificity: Most abundant in adrenal gland, liver, testis, and brain

        Pathway & Disease-focused RT2 Profiler PCR Array including DHCR7: 
              Lipoprotein Signaling & Cholesterol Metabolism in human mouse rat

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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for DHCR7 gene from Selected species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dhcr71 , 5 7-dehydrocholesterol reductase1, 5 84.85(n)1
    88.75(a)1
      7 (88.33 cM)5
    133601  NM_007856.21  NP_031882.11 
     1438231455 
    chicken
    (Gallus gallus)
    Aves DHCR71 7-dehydrocholesterol reductase 71.66(n)
    76.58(a)
      422982  NM_001199490.1  NP_001186419.1 
    lizard
    (Anolis carolinensis)
    Reptilia DHCR76
    7-dehydrocholesterol reductase
    74(a)
    1 ↔ 1
    1(56029782-56055067)
    African clawed frog
    (Xenopus laevis)
    Amphibia BC054203.12   -- 76.1(n)    BC054203.1 
    zebrafish
    (Danio rerio)
    Actinopterygii dhcr72 7-dehydrocholesterol reductase 78.74(n)   378446  BC055631.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta LBR6
    Lamin B receptor
    12(a)
    1 ↔ 1
    2R(17608002-17611564)
    worm
    (Caenorhabditis elegans)
    Secernentea dhcr-76
    Protein DHCR-7 (dhcr-7) mRNA, complete cds
    20(a)
    1 ↔ 1
    V(20480792-20485385) WBGene00007126
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes ERG246
    C-14 sterol reductase, acts in ergosterol biosynth...
    28(a)
    1 → many
    XIV(109095-110411) YNL280C
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons DWF51 DWF5 48.81(n)
    39.79(a)
      841465  NM_103926.5  NP_175460.1 
    rice
    (Oryza sativa)
    Liliopsida Os02g04654001 Os02g0465400 49.32(n)
    40.64(a)
      4329318  NM_001053344.1  NP_001046809.1 


    ENSEMBL Gene Tree for DHCR7 (if available)
    TreeFam Gene Tree for DHCR7 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for DHCR7 gene
    LBR2  TM7SF22  
    2 SIMAP similar genes for DHCR7 using alignment to 10 protein entries:     DHCR7_HUMAN (see all proteins):
    LBR    TM7SF2

    Find genes that share paralogs with DHCR7           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for DHCR7 (see all 572)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0231814
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231812 H P mis40--------
    VAR_0231714
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231712 R Q mis40--------
    VAR_0231624
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231622 R C mis40--------
    VAR_0231564
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231562 S L mis40--------
    VAR_0231774
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231772 R S mis40--------
    VAR_0231764
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231762 S L mis40--------
    VAR_0231544
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231542 G D mis40--------
    VAR_0127254
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0127252 T I mis40--------
    VAR_0231634
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231632 R H mis40--------
    VAR_0231754
    Smith-Lemli-Opitz syndrome (SLOS)4--see VAR_0231752 C Y mis40--------

    HapMap Linkage Disequilibrium report for DHCR7 (71139239 - 71163914 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 5 variations for DHCR7:    About this table    
    Variant IDTypeSubtypePubMed ID
    dgv74n21CNV Loss19592680
    nsv897898CNV Loss21882294
    nsv518163CNV Loss19592680
    nsv897897CNV Loss21882294
    nsv897896CNV Gain21882294

    Human Gene Mutation Database (HGMD): DHCR7
    Locus Specific Mutation Databases (LSDB): DHCR7

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing DHCR7
    DNA2.0 Custom Variant and Variant Library Synthesis for DHCR7

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

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    OMIM gene information: 602858   
    OMIM disorders: 270400  
    UniProtKB/Swiss-Prot: DHCR7_HUMAN, Q9UBM7
  • Smith-Lemli-Opitz syndrome (SLOS) [MIM:270400]: An autosomal recessive frequent inborn disorder of sterol
    metabolism with characteristic congenital malformations and mental retardation. Children with SLOS have elevated
    serum 7-dehydrocholesterol (7-DHC) levels and low serum cholesterol levels. SLOS occurs in relatively high
    frequency: approximately 1 in 20,000 to 30,000 births in populations of northern and central European background.
    Historically, a clinical distinction often was made between classic ('type I') SLOS and the more severely
    affected ('type II') patients. There is, in reality, a clinical and biochemical continuum from mild to severe
    SLOS. Note=The disease is caused by mutations affecting the gene represented in this entry

  • 5 diseases for DHCR7:    
    About MalaCards
    smith-lemli-opitz syndrome    syndactyly    holoprosencephaly    atrioventricular septal defect
    bardet-biedl syndrome 10

    7 diseases from the University of Copenhagen DISEASES database for DHCR7:
    Smith-Lemli-Opitz syndrome     Syndactyly     Intellectual disability     Atrioventricular septal defect
    Holoprosencephaly     Polydactyly     Autosomal recessive disease

    Find genes that share disorders with DHCR7           About GenesLikeMe

    9 Novoseek inferred disease relationships for DHCR7 gene    About this table

    Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    smith-lemli-opitz syndrome 98.9 116 16392899 (3), 11298379 (2), 19406241 (2), 18249054 (2) (see all 75)
    anomaly congenital multiple 88.5 16 10719329 (1), 10899806 (1), 8863875 (1), 11175299 (1) (see all 12)
    mental retardation 77.1 14 10719329 (1), 10899806 (1), 18951487 (1), 8863875 (1) (see all 11)
    holoprosencephaly 74.8 4 8989473 (1), 19449411 (1), 9358606 (1)
    growth failure 50.7 4 10719329 (1), 11001806 (1), 10951458 (1)
    congenital malformation 49.7 2 10329655 (1), 10814720 (1)
    craniofacial anomaly 47.1 1 11001806 (1)
    developmental disabilities 42.9 3 16814115 (1), 11111101 (1)
    genetic disorder 35.4 2 10814720 (1), 11352988 (1)

    GeneTests: DHCR7
    GeneReviews: DHCR7
    Genetic Association Database (GAD): DHCR7
    Human Genome Epidemiology (HuGE) Navigator: DHCR7 (18 documents)

    Export disorders for DHCR7 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for DHCR7 gene, integrated from 10 sources (see all 179):
    (articles sorted by number of sources associating them with DHCR7)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Mutations in the human sterol delta 7-reductase gene at 11q12-13 cause Smith-Lemli-Opitz syndrome. (PubMed id 9634533)1, 2, 3, 9 Wassif C.A.... Porter F.D. (Am. J. Hum. Genet. 1998)
    2. Molecular cloning and expression of the human delta7-sterol reductase. (PubMed id 9465114)1, 2, 3 Moebius F.F.... Glossmann H. (Proc. Natl. Acad. Sci. U.S.A. 1998)
    3. Frequency gradients of DHCR7 mutations in patients with Smith-Lemli- Opitz syndrome in Europe: evidence for different origins of common mutations. (PubMed id 11175299)1, 2, 9 Witsch-Baumgartner M.... Utermann G. (Eur. J. Hum. Genet. 2001)
    4. Age and origin of major Smith-Lemli-Opitz syndrome (SLOS) mutations in European populations. (PubMed id 17965227)1, 4, 9 Witsch-Baumgartner M....Utermann G. (J. Med. Genet. 2008)
    5. Identification of nine novel DHCR7 missense mutations in patients with Smith-Lemli-Opitz syndrome (SLOS). (PubMed id 15954111)1, 2, 9 Waye J.S.... Porter F.D. (Hum. Mutat. 2005)
    6. Novel mutations in the 7-dehydrocholesterol reductase gene of 13 patients with Smith-Lemli-Opitz syndrome. (PubMed id 11427181)1, 2, 9 Jira P.E....Waterham H.R. (Ann. Hum. Genet. 2001)
    7. Smith-Lemli-Opitz syndrome is caused by mutations in the 7- dehydrocholesterol reductase gene. (PubMed id 9683613)1, 2, 9 Waterham H.R.... Wanders R.J.A. (Am. J. Hum. Genet. 1998)
    8. SLOS carrier frequency in Poland as determined by screening for Trp151X and Val326Leu DHCR7 mutations. (PubMed id 16497572)1, 4, 9 Ciara E....Krajewska-Walasek M. (Eur J Med Genet 2006)
    9. Maternal apo E genotype is a modifier of the Smith-Lemli-Opitz syndrome. (PubMed id 15286151)1, 4, 9 Witsch-Baumgartner M....Utermann G. (J. Med. Genet. 2004)
    10. DHCR7 mutations and genotype-phenotype correlation in 37 Polish patients with Smith-Lemli-Opitz syndrome. (PubMed id 15521979)1, 4, 9 Ciara E....Krajewska-Walasek M. (Clin. Genet. 2004)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Disorders
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 1717 HGNC: 2860 AceView: DHCR7 Ensembl:ENSG00000172893 euGenes: HUgn1717
    ECgene: DHCR7 Kegg: 1717 H-InvDB: DHCR7

    (According to HUGE)
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      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for DHCR7 Pharmacogenomics, SNPs, Pathways
    GeneReviewshttp://www.ncbi.nlm.nih.gov/books/NBK1116/?term=DHCR7[genesymbol]

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for DHCR7 gene:
    Search GeneIP for patents involving DHCR7

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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