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Aliases for DGKD Gene

Aliases for DGKD Gene

  • Diacylglycerol Kinase, Delta 130kDa 2 3
  • Diglyceride Kinase Delta 3 4
  • DAG Kinase Delta 3 4
  • EC 2.7.1.107 4 63
  • DGK-Delta 3 4
  • Diacylglycerol Kinase, Delta (130kD) 2
  • 130 KDa Diacylglycerol Kinase 4
  • Diglyceride Kinase 2
  • DGKdelta 3
  • KIAA0145 4
  • Dgkd-2 3

External Ids for DGKD Gene

Previous GeneCards Identifiers for DGKD Gene

  • GC02P232271
  • GC02P232944
  • GC02P234279
  • GC02P234549
  • GC02P234045
  • GC02P233927
  • GC02P226097
  • GC02P234272

Summaries for DGKD Gene

Entrez Gene Summary for DGKD Gene

  • This gene encodes a cytoplasmic enzyme that phosphorylates diacylglycerol to produce phosphatidic acid. Diacylglycerol and phosphatidic acid are two lipids that act as second messengers in signaling cascades. Their cellular concentrations are regulated by the encoded protein, and so it is thought to play an important role in cellular signal transduction. Alternative splicing results in two transcript variants encoding different isoforms. [provided by RefSeq, Jul 2008]

GeneCards Summary for DGKD Gene

DGKD (Diacylglycerol Kinase, Delta 130kDa) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and Interleukin receptor SHC signaling. GO annotations related to this gene include protein homodimerization activity and NAD+ kinase activity. An important paralog of this gene is DGKI.

UniProtKB/Swiss-Prot for DGKD Gene

  • May function as signaling molecule.

  • Isoform 2 may be involved in cell growth and tumorigenesis. Involved in clathrin-dependent endocytosis.

Tocris Summary for DGKD Gene

  • Diacylglycerol kinases (DGKs) are a group of ten enzymes that metabolize 1,2,diacylglycerol (DAG) to produce phosphatidic acid (PA). They all contain a conserved C'-terminal catalytic domain and two cysteine-rich Zn2+-finger motifs with varied regulatory domains.

Gene Wiki entry for DGKD Gene

No data available for PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DGKD Gene

Genomics for DGKD Gene

Regulatory Elements for DGKD Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for DGKD Gene

Chromosome:
2
Start:
233,354,507 bp from pter
End:
233,472,104 bp from pter
Size:
117,598 bases
Orientation:
Plus strand

Genomic View for DGKD Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DGKD Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGKD Gene

Proteins for DGKD Gene

  • Protein details for DGKD Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q16760-DGKD_HUMAN
    Recommended name:
    Diacylglycerol kinase delta
    Protein Accession:
    Q16760
    Secondary Accessions:
    • Q14158
    • Q6PK55
    • Q8NG53

    Protein attributes for DGKD Gene

    Size:
    1214 amino acids
    Molecular mass:
    134525 Da
    Quaternary structure:
    • The two isoforms are able to form homo- and hetero-oligomer structures (at least tetramers). Isoform 2 interacts with AP2A2.

    Three dimensional structures from OCA and Proteopedia for DGKD Gene

    Alternative splice isoforms for DGKD Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DGKD Gene

Proteomics data for DGKD Gene at MOPED

Post-translational modifications for DGKD Gene

Antibody Products

Domains & Families for DGKD Gene

Suggested Antigen Peptide Sequences for DGKD Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q16760

UniProtKB/Swiss-Prot:

DGKD_HUMAN :
  • Contains 1 DAGKc domain.
  • Belongs to the eukaryotic diacylglycerol kinase family.
  • Contains 2 phorbol-ester/DAG-type zinc fingers.
Domain:
  • Contains 1 DAGKc domain.
  • Contains 1 PH domain.
  • Contains 1 SAM (sterile alpha motif) domain.
Family:
  • Belongs to the eukaryotic diacylglycerol kinase family.
Similarity:
  • Contains 2 phorbol-ester/DAG-type zinc fingers.
genes like me logo Genes that share domains with DGKD: view

Function for DGKD Gene

Molecular function for DGKD Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + 1,2-diacyl-sn-glycerol = ADP + 1,2-diacyl-sn-glycerol 3-phosphate
UniProtKB/Swiss-Prot EnzymeRegulation:
Partially inhibited by phosphatidylserine
UniProtKB/Swiss-Prot Function:
May function as signaling molecule.
UniProtKB/Swiss-Prot Function:
Isoform 2 may be involved in cell growth and tumorigenesis. Involved in clathrin-dependent endocytosis.

Enzyme Numbers (IUBMB) for DGKD Gene

Gene Ontology (GO) - Molecular Function for DGKD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004143 diacylglycerol kinase activity TAS 8626538
GO:0005515 protein binding IPI 23414517
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity --
GO:0019992 diacylglycerol binding NAS 12200442
genes like me logo Genes that share ontologies with DGKD: view
genes like me logo Genes that share phenotypes with DGKD: view

Animal Models for DGKD Gene

MGI Knock Outs for DGKD:

Animal Model Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DGKD

In Situ Assay Products

Flow Cytometry Products

No data available for Transcription Factor Targets and HOMER Transcription for DGKD Gene

Localization for DGKD Gene

Subcellular locations from UniProtKB/Swiss-Prot for DGKD Gene

Isoform 2: Cytoplasm.
Isoform 1: Membrane; Peripheral membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DGKD Gene COMPARTMENTS Subcellular localization image for DGKD gene
Compartment Confidence
plasma membrane 5
nucleus 2

Gene Ontology (GO) - Cellular Components for DGKD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005737 cytoplasm IDA 12200442
GO:0005886 plasma membrane TAS --
GO:0016023 cytoplasmic membrane-bounded vesicle IDA 12200442
genes like me logo Genes that share ontologies with DGKD: view

Pathways & Interactions for DGKD Gene

genes like me logo Genes that share pathways with DGKD: view

Gene Ontology (GO) - Biological Process for DGKD Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006897 endocytosis IEA --
GO:0007165 signal transduction TAS 8626538
GO:0007173 epidermal growth factor receptor signaling pathway NAS 12200442
GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway NAS 12200442
GO:0007275 multicellular organismal development NAS 12200442
genes like me logo Genes that share ontologies with DGKD: view

No data available for SIGNOR curated interactions for DGKD Gene

Drugs & Compounds for DGKD Gene

(2) Drugs for DGKD Gene - From: HMDB and DrugBank

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphatidylserine Approved Nutra Target 0
Adenosine triphosphate Approved Nutra 0

(151) Additional Compounds for DGKD Gene - From: HMDB, Tocris, and NovoSeek

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Antagonist, Gating inhibitor 58-64-0
Diglycerides Group A
  • 1,2-Dimyristoyl-rac-glycerol
  • DAG(14:0/14:0)
  • DAG(28:0)
  • DG(14:0/14:0)
  • DG(28:0)
Diglycerides Group B
  • 1-Palmitoleoyl-2-arachidonyl-sn-glycerol
  • DAG(16:1/20:0)
  • DAG(16:1n7/20:0)
  • DAG(16:1w7/20:0)
  • DAG(36:1)
Diglycerides Group C
  • 1-Myristoyl-3-stearoyl-sn-glycerol
  • 1-Tetradecanoyl-3-octadecanoyl-sn-glycerol
  • DAG(14:0/0:0/18:0)
  • DAG(32:0)
  • DG(32:0)
Diglycerides Group D
  • 1,2-Didocosahexaenoyl-rac-glycerol
  • DAG(22:6/22:6)
  • DAG(22:6n3/22:6n3)
  • DAG(22:6w3/22:6w3)
  • DAG(44:12)
genes like me logo Genes that share compounds with DGKD: view

Transcripts for DGKD Gene

Unigene Clusters for DGKD Gene

Diacylglycerol kinase, delta 130kDa:
Representative Sequences:

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DGKD

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DGKD Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^ 22 ^ 23 ^ 24 ^
SP1: - - -
SP2: - -
SP3:
SP4:

ExUns: 25 ^ 26 ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32a · 32b
SP1:
SP2:
SP3:
SP4:

Relevant External Links for DGKD Gene

GeneLoc Exon Structure for
DGKD
ECgene alternative splicing isoforms for
DGKD

Expression for DGKD Gene

mRNA expression in normal human tissues for DGKD Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DGKD Gene

This gene is overexpressed in Muscle - Skeletal (x4.3).

Protein differential expression in normal tissues from HIPED for DGKD Gene

This gene is overexpressed in Peripheral blood mononuclear cells (36.2), Heart (18.4), and Skin (14.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for DGKD Gene



SOURCE GeneReport for Unigene cluster for DGKD Gene Hs.471675

mRNA Expression by UniProt/SwissProt for DGKD Gene

Q16760-DGKD_HUMAN
Tissue specificity: Isoform 2 is ubiquitously expressed also in tumor tissues. Isoform 1 is expressed in ovary, spleen and some tumor-derived cells.
genes like me logo Genes that share expression patterns with DGKD: view

Protein tissue co-expression partners for DGKD Gene

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

In Situ Assay Products

Orthologs for DGKD Gene

This gene was present in the common ancestor of animals.

Orthologs for DGKD Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia DGKD 35
  • 86.88 (n)
  • 92.62 (a)
DGKH 36
  • 93 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DGKD 35
  • 89.07 (n)
  • 95.25 (a)
DGKD 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dgkd 35
  • 86.88 (n)
  • 93.9 (a)
Dgkd 16
Dgkd 36
  • 94 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia DGKD 35
  • 99.51 (n)
  • 99.75 (a)
DGKD 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Dgkd 35
  • 87.01 (n)
  • 93.72 (a)
oppossum
(Monodelphis domestica)
Mammalia DGKD 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 90 (a)
OneToMany
-- 36
  • 79 (a)
OneToMany
-- 36
  • 98 (a)
OneToMany
chicken
(Gallus gallus)
Aves DGKD 35
  • 80.85 (n)
  • 89.94 (a)
DGKD 36
  • 89 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DGKD 36
  • 88 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dgkd 35
  • 72.09 (n)
  • 79.22 (a)
African clawed frog
(Xenopus laevis)
Amphibia Xl.13329 35
zebrafish
(Danio rerio)
Actinopterygii si:dkey-172j4.3 36
  • 64 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG34384 36
  • 30 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea F42A9.1a 37
  • 38 (a)
F42A9.1b 37
  • 38 (a)
dgk-4 36
  • 31 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea CSA.2680 36
  • 49 (a)
OneToMany
Species with no ortholog for DGKD:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DGKD Gene

ENSEMBL:
Gene Tree for DGKD (if available)
TreeFam:
Gene Tree for DGKD (if available)

Paralogs for DGKD Gene

Paralogs for DGKD Gene

(2) SIMAP similar genes for DGKD Gene using alignment to 6 proteins:

Pseudogenes.org Pseudogenes for DGKD Gene

genes like me logo Genes that share paralogs with DGKD: view

Variants for DGKD Gene

Sequence variations from dbSNP and Humsavar for DGKD Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs2026 -- 233,472,020(+) ATTGT(C/T)ATGTA utr-variant-3-prime
rs750887 -- 233,421,480(+) agCTT(G/T)CATGG intron-variant
rs882428 -- 233,471,477(-) CCACA(C/T)CGCCA utr-variant-3-prime
rs1053880 -- 233,460,242(+) GCGAG(C/G)TGCCC reference, missense, downstream-variant-500B
rs1053893 -- 233,470,054(+) AAAAA(A/C)ATTCC utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for DGKD Gene

Variant ID Type Subtype PubMed ID
dgv495n27 CNV Loss 19166990
esv28401 CNV Loss 19812545
esv2657296 CNV Deletion 23128226
esv2721654 CNV Deletion 23290073
esv26406 CNV Gain 19812545
esv2721655 CNV Deletion 23290073
esv2663070 CNV Deletion 23128226
nsv876013 CNV Gain 21882294
esv1994590 CNV Deletion 18987734
esv2673713 CNV Deletion 23128226
esv2721656 CNV Deletion 23290073

Variation tolerance for DGKD Gene

Residual Variation Intolerance Score: 2.08% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.02; 37.14% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DGKD Gene

HapMap Linkage Disequilibrium report
DGKD
Human Gene Mutation Database (HGMD)
DGKD

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DGKD Gene

Disorders for DGKD Gene

Relevant External Links for DGKD

Genetic Association Database (GAD)
DGKD
Human Genome Epidemiology (HuGE) Navigator
DGKD
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DGKD
genes like me logo Genes that share disorders with DGKD: view

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DGKD Gene

Publications for DGKD Gene

  1. Molecular cloning of a novel diacylglycerol kinase isozyme with a pleckstrin homology domain and a C-terminal tail similar to those of the EPH family of protein-tyrosine kinases. (PMID: 8626538) Sakane F. … Kanoh H. (J. Biol. Chem. 1996) 2 23 25 26 67
  2. Nuclear diacylglycerol kinase-theta is activated in response to alpha-thrombin. (PMID: 11309392) Bregoli L. … Raben D.M. (J. Biol. Chem. 2001) 25 26 67
  3. Regulation of clathrin-dependent endocytosis by diacylglycerol kinase delta: importance of kinase activity and binding to AP2alpha. (PMID: 17880279) Kawasaki T. … Saito N. (Biochem. J. 2008) 23 67
  4. Regulation of enzyme localization by polymerization: polymer formation by the SAM domain of diacylglycerol kinase delta1. (PMID: 18334213) Harada B.T. … Bowie J.U. (Structure 2008) 23 67
  5. How many drug targets are there? (PMID: 17139284) Overington J.P. … Hopkins A.L. (Nat Rev Drug Discov 2006) 25 26

Products for DGKD Gene

Sources for DGKD Gene

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