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Aliases for DGCR5 Gene

Subcategory (RNA class) for DGCR5 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for DGCR5 Gene

  • DiGeorge Syndrome Critical Region Gene 5 (Non-Protein Coding) 2 3 5
  • Long Intergenic Non-Protein Coding RNA 37 2 3
  • Cadherin EGF LAG Seven-Pass G-Type Receptor 1 Pseudogene 3
  • Non-Protein Coding RNA 37 2
  • NCRNA00037 3
  • LINC00037 3

External Ids for DGCR5 Gene

Previous GeneCards Identifiers for DGCR5 Gene

  • GC22U990094
  • GC22P015899
  • GC22P017332
  • GC22P017347
  • GC22P018958
  • GC22P002579

Summaries for DGCR5 Gene

GeneCards Summary for DGCR5 Gene

DGCR5 (DiGeorge Syndrome Critical Region Gene 5 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with DGCR5 include Digeorge Syndrome.

Gene Wiki entry for DGCR5 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DGCR5 Gene

Genomics for DGCR5 Gene

Regulatory Elements for DGCR5 Gene

Enhancers for DGCR5 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22G018923 1.8 FANTOM5 Ensembl ENCODE dbSUPER 7.7 -40.3 -40320 13.4 HDGF MLX ZFP64 ARID4B SIN3A DMAP1 ZNF121 GLIS2 FOS SP5 DGCR6 PRODH DGCR5 MICAL3 TUBA8 GC22P018950 ENSG00000283809
GH22G018967 1.1 Ensembl ENCODE 9.3 -2.5 -2549 1.4 HDAC1 RB1 TBL1XR1 ARID4B ZBTB40 ZNF2 RAD21 RARA ZNF766 GLIS2 PRODH DGCR5 ENSG00000280418
GH22G018975 0.5 ENCODE 11.1 +5.6 5588 1.2 ZNF121 MCM3 HNF4A DGCR5 DGCR6 PRODH ENSG00000283406 ENSG00000283583
GH22G019069 0.7 dbSUPER 4.6 +99.8 99779 1.2 ZNF263 HDAC6 ZNF146 TAF15 HDAC8 ZIC2 FOXA1 JUND ATF3 ZNF692 DGCR2 ENSG00000223461 TSSK1A TSSK2 DGCR14 DGCR5 GC22M019062 GC22P019200
GH22G018950 0.4 dbSUPER 8 -19.7 -19726 1.3 KLF1 HNF4A DGCR6 PRODH DGCR5 GC22P018956 ENSG00000280418
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DGCR5 on UCSC Golden Path with GeneCards custom track

Promoters for DGCR5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000143701 102 801 CTCF HDAC6 RB1 TEAD4 SIN3A UBTF ZNF384 RBBP5 E2F1 ZFHX2

Genomic Location for DGCR5 Gene

18,970,498 bp from pter
19,031,242 bp from pter
60,745 bases
Plus strand

Genomic View for DGCR5 Gene

Genes around DGCR5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DGCR5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DGCR5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGCR5 Gene

Proteins for DGCR5 Gene

Post-translational modifications for DGCR5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DGCR5 Gene

Domains & Families for DGCR5 Gene

Gene Families for DGCR5 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DGCR5: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DGCR5 Gene

Function for DGCR5 Gene

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DGCR5 Gene

Localization for DGCR5 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DGCR5 Gene

Pathways & Interactions for DGCR5 Gene

SuperPathways for DGCR5 Gene

No Data Available

Interacting Proteins for DGCR5 Gene

Gene Ontology (GO) - Biological Process for DGCR5 Gene


No data available for Pathways by source and SIGNOR curated interactions for DGCR5 Gene

Drugs & Compounds for DGCR5 Gene

No Compound Related Data Available

Transcripts for DGCR5 Gene

Unigene Clusters for DGCR5 Gene

DiGeorge syndrome critical region gene 5 (non-protein coding):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DGCR5 Gene

No ASD Table

Relevant External Links for DGCR5 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DGCR5 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DGCR5 Gene

mRNA differential expression in normal tissues according to GTEx for DGCR5 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (x6.4), Brain - Cerebellum (x6.3), Brain - Cortex (x5.6), Brain - Frontal Cortex (BA9) (x4.7), and Brain - Anterior cingulate cortex (BA24) (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of DGCR5 Gene:


SOURCE GeneReport for Unigene cluster for DGCR5 Gene:

genes like me logo Genes that share expression patterns with DGCR5: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DGCR5 Gene

Orthologs for DGCR5 Gene

Evolution for DGCR5 Gene

Gene Tree for DGCR5 (if available)
Gene Tree for DGCR5 (if available)

No data available for Orthologs for DGCR5 Gene

Paralogs for DGCR5 Gene

No data available for Paralogs for DGCR5 Gene

Variants for DGCR5 Gene

Sequence variations from dbSNP and Humsavar for DGCR5 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1000016669 -- 19,015,356(+) ATGGT(A/G)GTTCA intron-variant
rs1000018519 -- 18,972,598(+) AAGGG(A/G)GTACT intron-variant
rs1000033315 -- 19,015,072(+) TTTCT(A/C/G)AGCAT intron-variant
rs1000058897 -- 19,009,068(+) AACTG(C/T)TGCAA intron-variant
rs1000074991 -- 18,985,332(+) TTAGT(A/C)ACATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DGCR5 Gene

Variant ID Type Subtype PubMed ID
dgv1283e212 CNV gain 25503493
dgv1284e212 CNV gain 25503493
dgv1285e212 CNV loss 25503493
dgv169n111 CNV duplication 26073780
dgv173e55 CNV gain 17911159
dgv174e55 CNV gain 17911159
dgv42e213 CNV gain 24956385
dgv43e213 CNV gain 24956385
dgv4466n100 CNV gain+loss 25217958
dgv4467n100 CNV gain 25217958
dgv4468n100 CNV gain+loss 25217958
dgv4469n100 CNV gain 25217958
dgv4471n100 CNV gain 25217958
dgv4472n100 CNV loss 25217958
dgv4473n100 CNV gain+loss 25217958
dgv4474n100 CNV gain 25217958
dgv4476n100 CNV gain 25217958
dgv4477n100 CNV gain 25217958
dgv541n27 CNV gain 19166990
dgv542n27 CNV loss 19166990
dgv543n27 CNV gain 19166990
dgv7969n54 CNV gain 21841781
dgv7971n54 CNV gain 21841781
dgv7972n54 CNV gain+loss 21841781
dgv7973n54 CNV gain 21841781
dgv7975n54 CNV loss 21841781
dgv7976n54 CNV gain 21841781
dgv7977n54 CNV gain 21841781
dgv7978n54 CNV loss 21841781
dgv823e214 CNV loss 21293372
dgv824e214 CNV gain 21293372
dgv99e203 CNV gain+loss 21179565
esv1669610 CNV deletion 17803354
esv2081719 CNV deletion 18987734
esv23076 CNV gain+loss 19812545
esv2658270 CNV deletion 23128226
esv2751935 CNV loss 17911159
esv2758824 CNV gain+loss 17122850
esv3233904 CNV deletion 24192839
esv32687 CNV gain+loss 17666407
esv3557920 CNV deletion 23714750
esv3575418 CNV gain 25503493
esv3575424 CNV gain 25503493
esv3575425 CNV gain 25503493
esv3584483 CNV gain 24956385
esv3584491 CNV gain 24956385
esv3647249 CNV loss 21293372
esv3647250 CNV gain 21293372
esv3647253 CNV loss 21293372
esv3647254 CNV loss 21293372
esv3893431 CNV gain+loss 25118596
esv3893432 CNV gain 25118596
esv3893433 CNV gain 25118596
nsv1065578 CNV gain 25217958
nsv1067175 CNV loss 25217958
nsv1114306 CNV deletion 24896259
nsv1136346 CNV deletion 24896259
nsv1160726 CNV duplication 26073780
nsv442503 CNV gain 18776908
nsv459336 CNV loss 19166990
nsv471179 CNV gain 18288195
nsv471180 CNV loss 18288195
nsv516997 CNV gain+loss 19592680
nsv588155 CNV gain 21841781
nsv588166 CNV loss 21841781
nsv588203 CNV gain+loss 21841781
nsv588209 CNV gain 21841781
nsv588210 CNV gain+loss 21841781
nsv588211 CNV gain 21841781
nsv588212 CNV gain 21841781
nsv588213 CNV gain 21841781
nsv588215 CNV loss 21841781
nsv953021 CNV deletion 24416366
nsv955510 CNV deletion 24416366
nsv966073 CNV duplication 23825009
nsv966074 CNV duplication 23825009

Relevant External Links for DGCR5 Gene

Human Gene Mutation Database (HGMD)
SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DGCR5 Gene

Disorders for DGCR5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DGCR5 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
digeorge syndrome
  • digeorge sequence
- elite association - COSMIC cancer census association via MalaCards
Search DGCR5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for DGCR5

Genetic Association Database (GAD)
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
genes like me logo Genes that share disorders with DGCR5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DGCR5 Gene

Publications for DGCR5 Gene

  1. Down-Regulation of LncRNA DGCR5 Correlates with Poor Prognosis in Hepatocellular Carcinoma. (PMID: 27898409) Huang R. … Sun B. (Cell. Physiol. Biochem. 2016) 2 3 64
  2. Human metabolic individuality in biomedical and pharmaceutical research. (PMID: 21886157) Suhre K. … Gieger C. (Nature 2011) 3 46 64
  3. Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome. (PMID: 8659529) Sutherland H.F. … Scambler P.J. (Am. J. Hum. Genet. 1996) 2 3 64
  4. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin S.Y. … Soranzo N. (Nat. Genet. 2014) 3 64
  5. Long non-coding RNAs in Huntington's disease neurodegeneration. (PMID: 22202438) Johnson R. (Neurobiol. Dis. 2012) 3 64

Products for DGCR5 Gene

Sources for DGCR5 Gene

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