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Aliases for DGCR5 Gene

Subcategory (RNA class) for DGCR5 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DGCR5 Gene

  • DiGeorge Syndrome Critical Region Gene 5 (Non-Protein Coding) 2 3
  • Long Intergenic Non-Protein Coding RNA 37 2 3
  • Cadherin EGF LAG Seven-Pass G-Type Receptor 1 Pseudogene 3
  • Non-Protein Coding RNA 37 2
  • NCRNA00037 3
  • LINC00037 3

External Ids for DGCR5 Gene

Summaries for DGCR5 Gene

GeneCards Summary for DGCR5 Gene

DGCR5 (DiGeorge Syndrome Critical Region Gene 5 (Non-Protein Coding)) is a RNA Gene, and belongs to non-coding RNA RNA class.

Gene Wiki entry for DGCR5 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DGCR5 Gene

Genomics for DGCR5 Gene

Genomic Location for DGCR5 Gene

Start:
18,970,498 bp from pter
End:
19,031,242 bp from pter
Size:
60,745 bases
Orientation:
Plus strand

Genomic View for DGCR5 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DGCR5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGCR5 Gene

Regulatory Elements for DGCR5 Gene

Proteins for DGCR5 Gene

Post-translational modifications for DGCR5 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DGCR5 Gene

Domains for DGCR5 Gene

Gene Families for DGCR5 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with DGCR5: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for DGCR5 Gene

Function for DGCR5 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DGCR5 Gene

Localization for DGCR5 Gene

No data available for Gene Ontology (GO) - Cellular Components for DGCR5 Gene

Pathways for DGCR5 Gene

SuperPathways for DGCR5 Gene

No Data Available

Interacting Proteins for DGCR5 Gene

Gene Ontology (GO) - Biological Process for DGCR5 Gene

None

No data available for Pathways by source for DGCR5 Gene

Transcripts for DGCR5 Gene

Unigene Clusters for DGCR5 Gene

DiGeorge syndrome critical region gene 5 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DGCR5 Gene

No ASD Table

Relevant External Links for DGCR5 Gene

GeneLoc Exon Structure for
DGCR5
ECgene alternative splicing isoforms for
DGCR5

Expression for DGCR5 Gene

mRNA expression in normal human tissues for DGCR5 Gene

mRNA differential expression in normal tissues according to GTEx for DGCR5 Gene

This gene is overexpressed in Brain - Cerebellar Hemisphere (6.4), Brain - Cerebellum (6.3), Brain - Cortex (5.6), Brain - Frontal Cortex (BA9) (4.7), and Brain - Anterior cingulate cortex (BA24) (4.5).

SOURCE GeneReport for Unigene cluster for DGCR5 Gene Hs.646438

genes like me logo Genes that share expressions with DGCR5: view

Orthologs for DGCR5 Gene

Evolution for DGCR5 Gene

ENSEMBL:
Gene Tree for DGCR5 (if available)
TreeFam:
Gene Tree for DGCR5 (if available)

No data available for Orthologs for DGCR5 Gene

Paralogs for DGCR5 Gene

No data available for Paralogs for DGCR5 Gene

Variants for DGCR5 Gene

Sequence variations from dbSNP and Humsavar for DGCR5 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type MAF
rs2913 -- 18,994,584(+) TAAGC(A/G)CTTTG nc-transcript-variant, intron-variant
rs888041 -- 18,995,264(+) TGTGC(A/G)GGGGA intron-variant
rs888042 -- 18,995,310(+) TGGCA(C/T)TCCCC intron-variant
rs1057716 -- 18,994,578(+) CCATT(C/T)TAAGC nc-transcript-variant, intron-variant
rs1210634 -- 18,991,168(+) CCCAG(C/T)GTTTC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DGCR5 Gene

Variant ID Type Subtype PubMed ID
dgv1380e1 CNV Complex 17122850
nsv516997 CNV Gain+Loss 19592680
esv2751935 CNV Loss 17911159
dgv173e55 CNV Gain 17911159
esv32687 CNV Gain+Loss 17666407
dgv4821n71 CNV Gain 21882294
dgv4822n71 CNV Gain 21882294
dgv4823n71 CNV Gain 21882294
nsv442503 CNV CNV 18776908
dgv4824n71 CNV Gain 21882294
dgv1381e1 CNV Complex 17122850
dgv1382e1 CNV Complex 17122850
dgv4825n71 CNV Gain 21882294
dgv4826n71 CNV Loss 21882294
dgv4827n71 CNV Loss 21882294
dgv4828n71 CNV Gain 21882294
dgv4829n71 CNV Gain+Loss 21882294
nsv459336 CNV Loss 19166990
dgv541n27 CNV Gain 19166990
dgv542n27 CNV Loss 19166990
nsv471179 CNV Gain 18288195
nsv471180 CNV Loss 18288195
dgv543n27 CNV Gain 19166990
nsv435744 CNV Deletion 17901297
nsv914227 CNV Loss 21882294
dgv174e55 CNV Gain 17911159
dgv1383e1 CNV Complex 17122850
dgv4830n71 CNV Gain 21882294
dgv4831n71 CNV Gain 21882294
dgv4832n71 CNV Loss 21882294
nsv914244 CNV Loss 21882294
dgv4833n71 CNV Loss 21882294
esv23076 CNV Gain+Loss 19812545
dgv4834n71 CNV Gain 21882294
nsv914257 CNV Loss 21882294
nsv914258 CNV Gain 21882294
nsv914259 CNV Loss 21882294
dgv4835n71 CNV Gain 21882294
dgv4836n71 CNV Gain 21882294
nsv914263 CNV Gain 21882294
esv2723974 CNV Deletion 23290073
esv2081719 CNV Deletion 18987734
esv2723975 CNV Deletion 23290073
esv1669610 CNV Deletion 17803354
dgv4837n71 CNV Gain 21882294

Relevant External Links for DGCR5 Gene

HapMap Linkage Disequilibrium report
DGCR5
Human Gene Mutation Database (HGMD)
DGCR5

Disorders for DGCR5 Gene

Relevant External Links for DGCR5

Genetic Association Database (GAD)
DGCR5
genes like me logo Genes that share disorders with DGCR5: view

No data available for UniProtKB/Swiss-Prot for DGCR5 Gene

Publications for DGCR5 Gene

  1. Identification of a novel transcript disrupted by a balanced translocation associated with DiGeorge syndrome. (PMID: 8659529) Sutherland H.F. … Scambler P.J. (Am. J. Hum. Genet. 1996) 2 3
  2. Human metabolic individuality in biomedical and pharmaceutical research. (PMID: 21886157) Suhre K. … Gieger C. (Nature 2011) 3 49
  3. Long non-coding RNAs in Huntington's disease neurodegeneration. (PMID: 22202438) Johnson R. (Neurobiol. Dis. 2012) 3
  4. An atlas of genetic influences on human blood metabolites. (PMID: 24816252) Shin S.Y. … Soranzo N. (Nat. Genet. 2014) 3
  5. High-resolution whole-genome association study of Parkinson disease. (PMID: 16252231) Maraganore D.M. … Ballinger D.G. (Am. J. Hum. Genet. 2005) 49

Products for DGCR5 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate DGCR5
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for DGCR5
    • Block miRNA regulation of DGCR5 using miScript Target Protectors

    Sources for DGCR5 Gene

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