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Aliases for DGCR11 Gene

Subcategory (RNA class) for DGCR11 Gene

lncRNA

Quality Score for this RNA gene is

13

Aliases for DGCR11 Gene

  • DiGeorge Syndrome Critical Region Gene 11 (Non-Protein Coding) 2 3 5
  • DiGeorge Syndrome Critical Region Gene 11 2
  • DiGeorge Syndrome Gene D 3
  • DGS-D 3

External Ids for DGCR11 Gene

ORGUL Members for DGCR11 Gene

Previous GeneCards Identifiers for DGCR11 Gene

  • GC22U900002
  • GC22M002654

Summaries for DGCR11 Gene

GeneCards Summary for DGCR11 Gene

DGCR11 (DiGeorge Syndrome Critical Region Gene 11 (Non-Protein Coding)) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DGCR11 Gene

Genomics for DGCR11 Gene

Regulatory Elements for DGCR11 Gene

Enhancers for DGCR11 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH22F019103 0.8 Ensembl ENCODE 23.5 -56.1 -56105 1.1 BCOR PKNOX1 TSC22D4 PTRF ZNF316 POLR2A ZNF366 HLF CEBPB ZEB2 DGCR11 PIR39211 GC22P019184
GH22F019119 0.5 ENCODE 23.3 -73.2 -73224 3.4 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A FEZF1 YY1 ZNF766 KLF13 DGCR2 DGCR11 E2F6P1 RPL7AP70 ENSG00000223461
GH22F018055 1.2 FANTOM5 Ensembl ENCODE 22.5 +990.8 990782 4.3 PKNOX1 ATF1 ARID4B SIN3A FEZF1 BRCA1 ZNF143 FOS SP3 JUNB DGCR11 MICAL3 PEX26 ENSG00000225335 ENSG00000236890 ENSG00000093100 TUBA8 BID LOC105372853 GC22P018073
GH22F019965 1.1 Ensembl ENCODE 21.6 -924.2 -924212 14.9 HDGF PKNOX1 ARNT MLX CREB3L1 ZFP64 SIN3A ARID4B DMAP1 ZNF2 DGCR8 LINC01311 ARVCF LOC100420177 RPL7AP70 ENSG00000273300 DGCR11 RPL8P5 ABHD17AP4 ENSG00000273343
GH22F019429 0.5 ENCODE 12.7 -383.4 -383399 4.7 CREB3L1 MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC RPL7AP70 DGCR8 UFD1L LINC01311 ENSG00000273300 DGCR11 C22orf29 E2F6P1 CLTCL1 RPL8P5
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DGCR11 on UCSC Golden Path with GeneCards custom track

Genomic Location for DGCR11 Gene

Chromosome:
22
Start:
19,046,162 bp from pter
End:
19,048,375 bp from pter
Size:
2,214 bases
Orientation:
Minus strand

Genomic View for DGCR11 Gene

Genes around DGCR11 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DGCR11 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DGCR11 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DGCR11 Gene

Proteins for DGCR11 Gene

Post-translational modifications for DGCR11 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DGCR11 Gene

Domains & Families for DGCR11 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DGCR11 Gene

Function for DGCR11 Gene

Animal Model Products

miRNA for DGCR11 Gene

miRTarBase miRNAs that target DGCR11

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DGCR11 Gene

Localization for DGCR11 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DGCR11 Gene

Pathways & Interactions for DGCR11 Gene

SuperPathways for DGCR11 Gene

No Data Available

Interacting Proteins for DGCR11 Gene

Gene Ontology (GO) - Biological Process for DGCR11 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DGCR11 Gene

Transcripts for DGCR11 Gene

mRNA/cDNA for DGCR11 Gene

(4) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DGCR11 Gene

DiGeorge syndrome critical region gene 11 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DGCR11 Gene

No ASD Table

Relevant External Links for DGCR11 Gene

GeneLoc Exon Structure for
DGCR11
ECgene alternative splicing isoforms for
DGCR11

Expression for DGCR11 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DGCR11 Gene

NURSA nuclear receptor signaling pathways regulating expression of DGCR11 Gene:

DGCR11

SOURCE GeneReport for Unigene cluster for DGCR11 Gene:

Hs.720269
genes like me logo Genes that share expression patterns with DGCR11: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DGCR11 Gene

Orthologs for DGCR11 Gene

Evolution for DGCR11 Gene

ENSEMBL:
Gene Tree for DGCR11 (if available)
TreeFam:
Gene Tree for DGCR11 (if available)

No data available for Orthologs for DGCR11 Gene

Paralogs for DGCR11 Gene

No data available for Paralogs for DGCR11 Gene

Variants for DGCR11 Gene

Sequence variations from dbSNP and Humsavar for DGCR11 Gene

SNP ID Clin Chr 22 pos Sequence Context AA Info Type
rs1051243 -- 19,047,114(-) CTCCT(C/T)GTATA intron-variant, nc-transcript-variant
rs1051248 -- 19,046,255(-) aatac(C/G)caatt intron-variant, nc-transcript-variant
rs10854539 -- 19,050,221(+) aatac(A/G)aaaag intron-variant, upstream-variant-2KB
rs111724569 -- 19,049,556(+) GCGCG(A/G)TGGCT intron-variant, upstream-variant-2KB
rs111908241 -- 19,049,928(+) TAAAA(C/T)AGAGA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DGCR11 Gene

Variant ID Type Subtype PubMed ID
dgv173e55 CNV gain 17911159
dgv174e55 CNV gain 17911159
dgv4473n100 CNV gain+loss 25217958
dgv4474n100 CNV gain 25217958
dgv7973n54 CNV gain 21841781
dgv824e214 CNV gain 21293372
esv2758824 CNV gain+loss 17122850
esv3575418 CNV gain 25503493
nsv1067175 CNV loss 25217958
nsv588213 CNV gain 21841781

Relevant External Links for DGCR11 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DGCR11

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DGCR11 Gene

Disorders for DGCR11 Gene

Relevant External Links for DGCR11

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DGCR11

No disorders were found for DGCR11 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DGCR11 Gene

Publications for DGCR11 Gene

  1. A transcription map of the DiGeorge and velo-cardio-facial syndrome minimal critical region on 22q11. (PMID: 8776594) Gong W. … Budarf M.L. (Hum. Mol. Genet. 1996) 2 3 64

Products for DGCR11 Gene

Sources for DGCR11 Gene

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