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Aliases for DERL1 Gene

Aliases for DERL1 Gene

  • Derlin 1 2 3
  • DER1 3 4 6
  • Degradation In Endoplasmic Reticulum Protein 1 3 4
  • Der1-Like Domain Family, Member 1 2 3
  • DERtrin-1 3 4
  • Der1-Like Protein 1 4
  • Derlin-1 3
  • DER-1 3

External Ids for DERL1 Gene

Previous GeneCards Identifiers for DERL1 Gene

  • GC08M124094
  • GC08M119351

Summaries for DERL1 Gene

Entrez Gene Summary for DERL1 Gene

  • The protein encoded by this gene is a member of the derlin family. Members of this family participate in the ER-associated degradation response and retrotranslocate misfolded or unfolded proteins from the ER lumen to the cytosol for proteasomal degradation. This protein recognizes substrate in the ER and works in a complex to retrotranslocate it across the ER membrane into the cytosol. This protein may select cystic fibrosis transmembrane conductance regulator protein (CFTR) for degradation as well as unfolded proteins in Alzheimer's disease. Alternative splicing results in multiple transcript variants that encode different protein isoforms. [provided by RefSeq, Aug 2012]

GeneCards Summary for DERL1 Gene

DERL1 (Derlin 1) is a Protein Coding gene. Diseases associated with DERL1 include cavernous hemangioma and cystic fibrosis. Among its related pathways are Translational Control and Protein Stability. GO annotations related to this gene include receptor activity and MHC class I protein binding. An important paralog of this gene is DERL3.

UniProtKB/Swiss-Prot for DERL1 Gene

  • Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In case of infection by cytomegaloviruses, it plays a central role in the export from the ER and subsequent degradation of MHC class I heavy chains via its interaction with US11 viral protein, which recognizes and associates with MHC class I heavy chains. Also participates in the degradation process of misfolded cytomegalovirus US2 protein.

Gene Wiki entry for DERL1 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DERL1 Gene

Genomics for DERL1 Gene

Regulatory Elements for DERL1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for DERL1 Gene

Start:
123,013,164 bp from pter
End:
123,042,423 bp from pter
Size:
29,260 bases
Orientation:
Minus strand

Genomic View for DERL1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DERL1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DERL1 Gene

Proteins for DERL1 Gene

  • Protein details for DERL1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BUN8-DERL1_HUMAN
    Recommended name:
    Derlin-1
    Protein Accession:
    Q9BUN8
    Secondary Accessions:
    • B3KW41
    • E9PH19

    Protein attributes for DERL1 Gene

    Size:
    251 amino acids
    Molecular mass:
    28801 Da
    Quaternary structure:
    • Forms homo- and heterooligomers with DERL2 and DERL3; binding to DERL3 is poorer than that between DERL2 and DERL3. Interacts with AMFR, VIMP/SELS, SEL1L, SELK, SYVN1 and VCP, as well as with SEL1L-SYVN1 and VCP-VIMP protein complexes; this interaction is weaker than that observed between DERL2 and these complexes. Interacts with the cytomegalovirus US11 protein. Interacts with NGLY1 and YOD1. Does not bind to EDEM1. Interacts with DNAJB9 and RNF103. Part of a complex which includes CANX, DERL1, DERL2, DDOST/OST48, RPN1, RPN2, SELK, VIMP, STT3A AND VCP (PubMed:15215855, PubMed:15215856, PubMed:16055502, PubMed:16186509, PubMed:16186510, PubMed:16289116, PubMed:16449189, PubMed:18675248, PubMed:19818707, PubMed:22016385). Interacts with HM13 (PubMed:25239945). Interacts with XBP1 isoform 1 (via luminal/ectodomain domain); the interaction obviates the need for ectodomain shedding prior HM13/SPP-mediated XBP1 isoform 1 cleavage (PubMed:25239945).

    Alternative splice isoforms for DERL1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DERL1 Gene

Proteomics data for DERL1 Gene at MOPED

Post-translational modifications for DERL1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DERL1 Gene

No data available for DME Specific Peptides for DERL1 Gene

Domains for DERL1 Gene

Protein Domains for DERL1 Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for DERL1 Gene

Graphical View of Domain Structure for InterPro Entry

Q9BUN8

UniProtKB/Swiss-Prot:

DERL1_HUMAN :
  • Q9BUN8
Family:
  • Belongs to the derlin family.
genes like me logo Genes that share domains with DERL1: view

No data available for Gene Families for DERL1 Gene

Function for DERL1 Gene

Molecular function for DERL1 Gene

UniProtKB/Swiss-Prot Function: Functional component of endoplasmic reticulum-associated degradation (ERAD) for misfolded lumenal proteins. May act by forming a channel that allows the retrotranslocation of misfolded proteins into the cytosol where they are ubiquitinated and degraded by the proteasome. May mediate the interaction between VCP and the degradation substrate. In case of infection by cytomegaloviruses, it plays a central role in the export from the ER and subsequent degradation of MHC class I heavy chains via its interaction with US11 viral protein, which recognizes and associates with MHC class I heavy chains. Also participates in the degradation process of misfolded cytomegalovirus US2 protein.
UniProtKB/Swiss-Prot Induction: Up-regulated in response to endoplasmic reticulum stress via the ERN1-XBP1 pathway of the unfolded protein response (UPR).

Gene Ontology (GO) - Molecular Function for DERL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002020 protease binding IPI 25239945
GO:0004872 receptor activity NAS 15215856
GO:0005515 protein binding IPI 15215856
GO:0042288 MHC class I protein binding IDA 15215855
genes like me logo Genes that share ontologies with DERL1: view

Phenotypes for DERL1 Gene

GenomeRNAi human phenotypes for DERL1:
genes like me logo Genes that share phenotypes with DERL1: view

Animal Model Products

CRISPR Products

miRNA for DERL1 Gene

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DERL1

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Animal Models , Transcription Factor Targeting and HOMER Transcription for DERL1 Gene

Localization for DERL1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DERL1 Gene

Endoplasmic reticulum membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DERL1 Gene COMPARTMENTS Subcellular localization image for DERL1 gene
Compartment Confidence
endoplasmic reticulum 5
plasma membrane 3
cytosol 2
endosome 2
lysosome 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for DERL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000836 Hrd1p ubiquitin ligase complex IDA 17872946
GO:0005769 early endosome IEA --
GO:0005770 late endosome IEA --
GO:0005783 endoplasmic reticulum IMP 16449189
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with DERL1: view

Pathways for DERL1 Gene

genes like me logo Genes that share pathways with DERL1: view

Pathways by source for DERL1 Gene

2 Cell Signaling Technology pathways for DERL1 Gene
1 BioSystems pathway for DERL1 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for DERL1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006986 response to unfolded protein IMP 15215855
GO:0019060 intracellular transport of viral protein in host cell TAS 15215856
GO:0030433 ER-associated ubiquitin-dependent protein catabolic process TAS 22013210
GO:0030968 endoplasmic reticulum unfolded protein response IDA 15215856
GO:0030970 retrograde protein transport, ER to cytosol IMP 15215855
genes like me logo Genes that share ontologies with DERL1: view

Transcripts for DERL1 Gene

Unigene Clusters for DERL1 Gene

Derlin 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DERL1

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DERL1 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8a · 8b
SP1: -
SP2: - -
SP3:
SP4: -

Relevant External Links for DERL1 Gene

GeneLoc Exon Structure for
DERL1
ECgene alternative splicing isoforms for
DERL1

Expression for DERL1 Gene

mRNA expression in normal human tissues for DERL1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DERL1 Gene

SOURCE GeneReport for Unigene cluster for DERL1 Gene Hs.241576

mRNA Expression by UniProt/SwissProt for DERL1 Gene

Q9BUN8-DERL1_HUMAN
Tissue specificity: Ubiquitous.
genes like me logo Genes that share expressions with DERL1: view

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for DERL1 Gene

Orthologs for DERL1 Gene

This gene was present in the common ancestor of animals.

Orthologs for DERL1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DERL1 35
  • 99.87 (n)
  • 100 (a)
DERL1 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia DERL1 35
  • 92.7 (n)
  • 99.2 (a)
DERL1 36
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DERL1 35
  • 95.09 (n)
  • 99.2 (a)
DERL1 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Derl1 35
  • 92.16 (n)
  • 97.61 (a)
Derl1 16
Derl1 36
  • 98 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia DERL1 36
  • 90 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DERL1 36
  • 81 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Derl1 35
  • 92.16 (n)
  • 97.61 (a)
chicken
(Gallus gallus)
Aves DERL1 35
  • 82.07 (n)
  • 91.24 (a)
DERL1 36
  • 91 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DERL1 36
  • 92 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.8076 35
tropical clawed frog
(Silurana tropicalis)
Amphibia derl1 35
  • 76 (n)
  • 85.6 (a)
Str.3016 35
zebrafish
(Danio rerio)
Actinopterygii derl1 35
  • 73.44 (n)
  • 86.06 (a)
derl1 36
  • 83 (a)
OneToOne
Dr.1920 35
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009288 35
  • 54.84 (n)
  • 51.21 (a)
fruit fly
(Drosophila melanogaster)
Insecta Der-1 35
  • 50 (n)
  • 43.8 (a)
Der-1 36
  • 42 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea cup-2 35
  • 56.67 (n)
  • 49.58 (a)
cup-2 36
  • 48 (a)
OneToOne
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5559 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8010 36
  • 57 (a)
OneToOne
Species with no ortholog for DERL1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DERL1 Gene

ENSEMBL:
Gene Tree for DERL1 (if available)
TreeFam:
Gene Tree for DERL1 (if available)

Paralogs for DERL1 Gene

Paralogs for DERL1 Gene

Selected SIMAP similar genes for DERL1 Gene using alignment to 4 proteins:

genes like me logo Genes that share paralogs with DERL1: view

Variants for DERL1 Gene

Sequence variations from dbSNP and Humsavar for DERL1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs7159 -- 123,015,388(-) GGTGC(A/G)CTTAA utr-variant-3-prime
rs7160 -- 123,013,442(-) CAAAT(G/T)GAAAA utr-variant-3-prime
rs7812 -- 123,015,322(-) AGTAC(A/G)AGACA utr-variant-3-prime
rs11691 -- 123,015,268(-) TTCAC(A/G)ATTCT utr-variant-3-prime
rs15091 -- 123,013,490(+) CAAAA(C/T)TCAAA utr-variant-3-prime

Relevant External Links for DERL1 Gene

HapMap Linkage Disequilibrium report
DERL1

PCR Panel Products

  • Copy Number PCR Panels: for DERL1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for DERL1 Gene

Disorders for DERL1 Gene

MalaCards: The human disease database

MalaCards: The human disease database. (2) Diseases for DERL1 Gene including...

Search for DERL1 Gene in MalaCards »

(1) Novoseek inferred disease relationships for DERL1 Gene

Disease -log(P) Hits PubMed IDs
cystic fibrosis 14.7 1
genes like me logo Genes that share disorders with DERL1: view

No data available for UniProtKB/Swiss-Prot for DERL1 Gene

Publications for DERL1 Gene

  1. A membrane protein required for dislocation of misfolded proteins from the ER. (PMID: 15215855) Lilley B.N. … Ploegh H.L. (Nature 2004) 2 3 4 23
  2. The retrotranslocation protein derlin-1 binds peptide:N-glycanase to the endoplasmic reticulum. (PMID: 16055502) Katiyar S. … Lennarz W.J. (Mol. Biol. Cell 2005) 3 4 23
  3. Multiprotein complexes that link dislocation, ubiquitination, and extraction of misfolded proteins from the endoplasmic reticulum membrane. (PMID: 16186509) Lilley B.N. … Ploegh H.L. (Proc. Natl. Acad. Sci. U.S.A. 2005) 3 4 23
  4. The ubiquitin-domain protein HERP forms a complex with components of the endoplasmic reticulum associated degradation pathway. (PMID: 16289116) Schulze A. … Seeger M. (J. Mol. Biol. 2005) 3 4 23
  5. Ubiquitin ligase Kf-1 is involved in the endoplasmic reticulum- associated degradation pathway. (PMID: 18675248) Maruyama Y. … Yamada M. (Biochem. Biophys. Res. Commun. 2008) 3 4 23

Products for DERL1 Gene

Sources for DERL1 Gene

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