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Aliases for DEPDC7 Gene

Aliases for DEPDC7 Gene

  • DEP Domain Containing 7 2 3 5
  • DJ85M6.4 (Novel 58.3 KDA Protein) 3
  • DEP Domain-Containing Protein 7 3
  • Novel 58.3 KDA Protein 3
  • Protein TR2/D15 4
  • DJ85M6.4 3
  • TR2 3

External Ids for DEPDC7 Gene

Previous GeneCards Identifiers for DEPDC7 Gene

  • GC11P032732

Summaries for DEPDC7 Gene

GeneCards Summary for DEPDC7 Gene

DEPDC7 (DEP Domain Containing 7) is a Protein Coding gene. Among its related pathways are Signaling by GPCR and p75 NTR receptor-mediated signalling. An important paralog of this gene is DEPDC1B.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEPDC7 Gene

Genomics for DEPDC7 Gene

Regulatory Elements for DEPDC7 Gene

Enhancers for DEPDC7 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH11G033289 1 ENCODE dbSUPER 14 +275.4 275396 3.1 MXI1 TBL1XR1 ZSCAN4 NR2F1 SUPT20H TBX21 EP300 NR2F2 ARID3A PRDM6 DEPDC7 TCP11L1 CSTF3 HIPK3 KIAA1549L
GH11G033015 1.4 Ensembl ENCODE 8.9 +1.4 1395 4.0 HDGF PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 ZNF766 PIGCP1 EIF3M DEPDC7 TCP11L1
GH11G033043 1.2 Ensembl ENCODE 8.5 +29.0 29037 3.6 TBP HDGF CBX3 ARID4B SIN3A FEZF1 BRCA1 RAD21 ZBTB40 RFX5 TCP11L1 PIGCP1 DEPDC7 LINC00294
GH11G033295 0.6 dbSUPER 14.5 +280.5 280459 2.1 TFDP1 ZNF639 GLIS1 ZNF10 ZNF175 ZNF584 FOS PRDM10 GTF2A2 DEPDC7 HIPK3 KIAA1549L
GH11G033133 1 Ensembl ENCODE 5.7 +118.8 118790 2.5 SIN3A RAD21 YY1 ZNF121 POLR2A ADNP HNF4G NFE2 ZNF362 JUND CSTF3 CSTF3-AS1 TCP11L1 DEPDC7 PIR59958
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DEPDC7 on UCSC Golden Path with GeneCards custom track

Promoters for DEPDC7 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000038487 337 1600 PKNOX1 MLX CREB3L1 ARID4B SIN3A DMAP1 YY1 SLC30A9 SP3 MXD4

Genomic Location for DEPDC7 Gene

Chromosome:
11
Start:
33,015,864 bp from pter
End:
33,033,582 bp from pter
Size:
17,719 bases
Orientation:
Plus strand

Genomic View for DEPDC7 Gene

Genes around DEPDC7 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEPDC7 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEPDC7 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEPDC7 Gene

Proteins for DEPDC7 Gene

  • Protein details for DEPDC7 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96QD5-DEPD7_HUMAN
    Recommended name:
    DEP domain-containing protein 7
    Protein Accession:
    Q96QD5
    Secondary Accessions:
    • G5E941
    • Q8N602
    • Q8NCU9
    • Q9UGK5

    Protein attributes for DEPDC7 Gene

    Size:
    511 amino acids
    Molecular mass:
    58310 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAM22871.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for DEPDC7 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DEPDC7 Gene

Post-translational modifications for DEPDC7 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DEPDC7 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DEPDC7 Gene

Domains & Families for DEPDC7 Gene

Protein Domains for DEPDC7 Gene

Suggested Antigen Peptide Sequences for DEPDC7 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q96QD5

UniProtKB/Swiss-Prot:

DEPD7_HUMAN :
  • Belongs to the DEPDC7 family.
Family:
  • Belongs to the DEPDC7 family.
genes like me logo Genes that share domains with DEPDC7: view

No data available for Gene Families for DEPDC7 Gene

Function for DEPDC7 Gene

Gene Ontology (GO) - Molecular Function for DEPDC7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005096 GTPase activator activity TAS --
genes like me logo Genes that share ontologies with DEPDC7: view
genes like me logo Genes that share phenotypes with DEPDC7: view

Animal Model Products

CRISPR Products

miRNA for DEPDC7 Gene

miRTarBase miRNAs that target DEPDC7

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DEPDC7 Gene

Localization for DEPDC7 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DEPDC7 gene
Compartment Confidence
cytosol 5
nucleus 3
mitochondrion 1

Gene Ontology (GO) - Cellular Components for DEPDC7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with DEPDC7: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for DEPDC7 Gene

Pathways & Interactions for DEPDC7 Gene

genes like me logo Genes that share pathways with DEPDC7: view

Pathways by source for DEPDC7 Gene

3 Reactome pathways for DEPDC7 Gene

Gene Ontology (GO) - Biological Process for DEPDC7 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007165 signal transduction IBA --
GO:0008150 biological_process ND --
GO:0035556 intracellular signal transduction IEA --
GO:0043547 positive regulation of GTPase activity IEA --
GO:0051056 regulation of small GTPase mediated signal transduction TAS --
genes like me logo Genes that share ontologies with DEPDC7: view

No data available for SIGNOR curated interactions for DEPDC7 Gene

Drugs & Compounds for DEPDC7 Gene

No Compound Related Data Available

Transcripts for DEPDC7 Gene

Unigene Clusters for DEPDC7 Gene

DEP domain containing 7:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DEPDC7 Gene

No ASD Table

Relevant External Links for DEPDC7 Gene

GeneLoc Exon Structure for
DEPDC7
ECgene alternative splicing isoforms for
DEPDC7

Expression for DEPDC7 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DEPDC7 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DEPDC7 Gene

This gene is overexpressed in Liver (x15.2) and Testis (x5.3).

Protein differential expression in normal tissues from HIPED for DEPDC7 Gene

This gene is overexpressed in Testis (60.7) and Serum (8.2).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DEPDC7 Gene



Protein tissue co-expression partners for DEPDC7 Gene

NURSA nuclear receptor signaling pathways regulating expression of DEPDC7 Gene:

DEPDC7

SOURCE GeneReport for Unigene cluster for DEPDC7 Gene:

Hs.280990

mRNA Expression by UniProt/SwissProt for DEPDC7 Gene:

Q96QD5-DEPD7_HUMAN
Tissue specificity: Expressed in liver.

Evidence on tissue expression from TISSUES for DEPDC7 Gene

  • Bone marrow(4.2)
  • Kidney(4.2)
genes like me logo Genes that share expression patterns with DEPDC7: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for DEPDC7 Gene

Orthologs for DEPDC7 Gene

This gene was present in the common ancestor of chordates.

Orthologs for DEPDC7 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DEPDC7 34 35
  • 99.61 (n)
dog
(Canis familiaris)
Mammalia DEPDC7 34 35
  • 90.98 (n)
cow
(Bos Taurus)
Mammalia DEPDC7 34 35
  • 90.61 (n)
rat
(Rattus norvegicus)
Mammalia Depdc7 34
  • 85.4 (n)
mouse
(Mus musculus)
Mammalia Depdc7 34 16 35
  • 84.93 (n)
oppossum
(Monodelphis domestica)
Mammalia DEPDC7 35
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DEPDC7 35
  • 71 (a)
OneToOne
chicken
(Gallus gallus)
Aves DEPDC7 34 35
  • 71.57 (n)
lizard
(Anolis carolinensis)
Reptilia DEPDC7 35
  • 65 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia depdc7 34
  • 64.16 (n)
Str.6544 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.25329 34
zebrafish
(Danio rerio)
Actinopterygii depdc7 34 35
  • 58.02 (n)
DEPDC7 (1 of 2) 35
  • 39 (a)
OneToMany
wufe36f02 34
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 23 (a)
OneToMany
Species where no ortholog for DEPDC7 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DEPDC7 Gene

ENSEMBL:
Gene Tree for DEPDC7 (if available)
TreeFam:
Gene Tree for DEPDC7 (if available)

Paralogs for DEPDC7 Gene

Paralogs for DEPDC7 Gene

(1) SIMAP similar genes for DEPDC7 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for DEPDC7 Gene

genes like me logo Genes that share paralogs with DEPDC7: view

Variants for DEPDC7 Gene

Sequence variations from dbSNP and Humsavar for DEPDC7 Gene

SNP ID Clin Chr 11 pos Sequence Context AA Info Type
rs1000093722 -- 33,017,494(+) TGCTG(A/G)TTATC intron-variant
rs1000329550 -- 33,020,795(+) ACTGT(C/G)CCTGC intron-variant
rs1000439372 -- 33,027,708(+) TTAAG(A/T)CATCC reference, missense
rs1000513915 -- 33,029,134(+) CAGAT(C/T)ATTGA intron-variant
rs1000668074 -- 33,022,253(+) TTTAA(A/G)TAGCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DEPDC7 Gene

Variant ID Type Subtype PubMed ID
dgv1093n100 CNV gain 25217958
esv24235 CNV gain 19812545
esv2759815 CNV gain 17122850
esv2762904 CNV gain 21179565
esv3625869 CNV gain 21293372
esv3625870 CNV loss 21293372
nsv1040484 CNV gain 25217958
nsv553993 CNV loss 21841781

Variation tolerance for DEPDC7 Gene

Residual Variation Intolerance Score: 52.1% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.33; 63.12% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DEPDC7 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEPDC7

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DEPDC7 Gene

Disorders for DEPDC7 Gene

Relevant External Links for DEPDC7

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DEPDC7

No disorders were found for DEPDC7 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DEPDC7 Gene

Publications for DEPDC7 Gene

  1. A 7.5 Mb sequence-ready PAC contig and gene expression map of human chromosome 11p13-p14.1. (PMID: 10568747) Gawin B. … Gessler M. (Genome Res. 1999) 2 3 4 64
  2. Further evidence of DEPDC7 DNA hypomethylation in depression: A study in adult twins. (PMID: 25952135) CA^rdova-Palomera A. … FaA+anA!s L. (Eur. Psychiatry 2015) 3 64
  3. A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein M.Y. … Mann M. (Cell 2015) 3 64
  4. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. (PMID: 26673895) KA+rlA+ K. … GAPrlich D. (Elife 2015) 3 64
  5. The Dishevelled, EGL-10 and pleckstrin (DEP) domain-containing protein DEPDC7 binds to CARMA2 and CARMA3 proteins, and regulates NF-I_B activation. (PMID: 25541973) D'Andrea E.L. … Stilo R. (PLoS ONE 2014) 3 64

Products for DEPDC7 Gene

Sources for DEPDC7 Gene

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