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Aliases for DENND5B-AS1 Gene

Subcategory (RNA class) for DENND5B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DENND5B-AS1 Gene

  • DENND5B Antisense RNA 1 2 3 5
  • DENND5B Antisense RNA 1 (Non-Protein Coding) 2

External Ids for DENND5B-AS1 Gene

Previous GeneCards Identifiers for DENND5B-AS1 Gene

  • GC00U933706
  • GC12P031743

Summaries for DENND5B-AS1 Gene

GeneCards Summary for DENND5B-AS1 Gene

DENND5B-AS1 (DENND5B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DENND5B-AS1 Gene

Genomics for DENND5B-AS1 Gene

Regulatory Elements for DENND5B-AS1 Gene

Enhancers for DENND5B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12G031368 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.6 -219.6 -219574 3.7 PKNOX1 FOXA2 CREB3L1 ARID4B FEZF1 ZNF121 KLF7 ZNF263 JUNB REST DENND5B DENND5B-AS1 RNU5F-4P FAM60A AK4P3 DDX11 ETFBKMT LINC02387 GC12M031383
GH12G031506 1.6 Ensembl ENCODE dbSUPER 10.9 -82.0 -82004 3.1 HDGF PKNOX1 ARNT CREB3L1 ARID4B SIN3A ZNF2 YY1 ZNF143 ZNF207 DENND5B DENND5B-AS1 RNU5F-4P AK4P3 GC12M031506 ENSG00000201228 ENSG00000225349
GH12G031316 1.7 Ensembl ENCODE dbSUPER 9.8 -267.9 -267868 10.8 HDGF PKNOX1 FOXA2 CREB3L1 ARNT AGO1 WRNIP1 SIN3A ARID4B DMAP1 FLJ13224 H3F3C IPO8 FAM60A KIAA1551 DENND5B-AS1 DENND5B RNU5F-4P ENSG00000256176
GH12G031516 1.4 Ensembl ENCODE dbSUPER 11 -70.6 -70601 4.6 TBP FOXA2 ZNF133 INSM2 SIN3A FEZF1 BRCA1 ZNF2 RAD21 ZEB1 DENND5B RNU5F-4P DENND5B-AS1 RNU6-618P ETFBKMT AK4P3 GC12M031506 ENSG00000201228 ENSG00000225349
GH12G031524 1.3 Ensembl ENCODE dbSUPER 11 -64.4 -64351 2.3 FOXA2 RARA RFX5 ZNF664 ARID3A NR2F6 CREM ZNF652 HOMEZ TCF7L2 DENND5B-AS1 DENND5B RNU5F-4P RNU6-618P ETFBKMT AK4P3 ENSG00000225349 ENSG00000201228 GC12M031506
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DENND5B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DENND5B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000050584 577 2601 PKNOX1 FOXA2 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 ZNF766 FOS

Genomic Location for DENND5B-AS1 Gene

Chromosome:
12
Start:
31,589,923 bp from pter
End:
31,615,666 bp from pter
Size:
25,744 bases
Orientation:
Plus strand

Genomic View for DENND5B-AS1 Gene

Genes around DENND5B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DENND5B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DENND5B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DENND5B-AS1 Gene

Proteins for DENND5B-AS1 Gene

Post-translational modifications for DENND5B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DENND5B-AS1 Gene

Domains & Families for DENND5B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DENND5B-AS1 Gene

Function for DENND5B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DENND5B-AS1 Gene

Localization for DENND5B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DENND5B-AS1 Gene

Pathways & Interactions for DENND5B-AS1 Gene

SuperPathways for DENND5B-AS1 Gene

No Data Available

Interacting Proteins for DENND5B-AS1 Gene

Gene Ontology (GO) - Biological Process for DENND5B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DENND5B-AS1 Gene

Drugs & Compounds for DENND5B-AS1 Gene

No Compound Related Data Available

Transcripts for DENND5B-AS1 Gene

mRNA/cDNA for DENND5B-AS1 Gene

(1) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DENND5B-AS1 Gene

DENND5B antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DENND5B-AS1 Gene

No ASD Table

Relevant External Links for DENND5B-AS1 Gene

GeneLoc Exon Structure for
DENND5B-AS1
ECgene alternative splicing isoforms for
DENND5B-AS1

Expression for DENND5B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DENND5B-AS1 Gene

SOURCE GeneReport for Unigene cluster for DENND5B-AS1 Gene:

Hs.627628
genes like me logo Genes that share expression patterns with DENND5B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DENND5B-AS1 Gene

Orthologs for DENND5B-AS1 Gene

Evolution for DENND5B-AS1 Gene

ENSEMBL:
Gene Tree for DENND5B-AS1 (if available)
TreeFam:
Gene Tree for DENND5B-AS1 (if available)

No data available for Orthologs for DENND5B-AS1 Gene

Paralogs for DENND5B-AS1 Gene

No data available for Paralogs for DENND5B-AS1 Gene

Variants for DENND5B-AS1 Gene

Sequence variations from dbSNP and Humsavar for DENND5B-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs1000296949 -- 31,600,165(+) AAAAA(A/G)AAAAA intron-variant
rs1000325060 -- 31,598,372(+) AAGGT(A/G)GCGGG intron-variant
rs1000372965 -- 31,592,614(+) AAATA(A/G)TGAGA intron-variant, upstream-variant-2KB
rs1000389123 -- 31,588,786(+) TCTGA(C/T)TGCTT intron-variant, upstream-variant-2KB
rs1000409809 -- 31,614,754(+) TGTCC(C/T)GAATA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DENND5B-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv2473n54 CNV loss 21841781
dgv2474n54 CNV gain+loss 21841781
dgv2475n54 CNV gain 21841781
esv2760267 CNV gain+loss 21179565
esv28191 CNV loss 19812545
nsv1070522 CNV deletion 25765185
nsv1119941 CNV deletion 24896259
nsv510291 OTHER sequence alteration 20534489
nsv558088 CNV loss 21841781
nsv558089 CNV gain+loss 21841781
nsv558090 CNV gain+loss 21841781
nsv558092 CNV gain 21841781
nsv558099 CNV loss 21841781
nsv832365 CNV loss 17160897
nsv975472 CNV duplication 23825009
nsv975547 CNV duplication 23825009
nsv983305 CNV duplication 23825009

Relevant External Links for DENND5B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DENND5B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DENND5B-AS1 Gene

Disorders for DENND5B-AS1 Gene

Relevant External Links for DENND5B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DENND5B-AS1

No disorders were found for DENND5B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DENND5B-AS1 Gene

Publications for DENND5B-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for DENND5B-AS1 Gene

Sources for DENND5B-AS1 Gene

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