DENND1C Gene
protein-coding GIFtS: 43
GCID: GC19M006467
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DENN/MADD domain containing 1C(Previous names: family with sequence similarity 31, member C )
(Previous symbol: FAM31C)
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Aliases
for DENND1C gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| DENN/MADD Domain Containing 1C1 2 | | FLJ227571 | | FAM31C1 2 3 | | DENN Domain-Containing Protein 1C2 | | Family With Sequence Similarity 31, Member C1 2 | | Protein FAM31C3 | | Connecdenn 32 3 | | |
Export aliases for DENND1C gene to outside databasesPrevious GC identifers: GC19M006419 GC19M006230 |
Summaries
for DENND1C gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for DENND1C:
Clathrin (see MIM 118955)-mediated endocytosis is a major mechanism for internalization of proteins and lipids. Membersof the connecdenn family, such as DENND1C, function as guanine nucleotide exchange factors (GEFs) for the earlyendosomal small GTPase RAB35 (MIM 604199) and bind to clathrin and clathrin adaptor protein-2 (AP2; see MIM 601024).Thus, connecdenns link RAB35 activation with the clathrin machinery (Marat and McPherson, 2010 (PubMed20154091)).(supplied by OMIM, Nov 2010)
UniProtKB/Swiss-Prot: DEN1C_HUMAN, Q8IV53Function: Guanine nucleotide exchange factor (GEF) which may activate RAB8A, RAB13 and RAB35. Promotes the exchange ofGDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form
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Genomic Views
for DENND1C gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000019.9 NC_018930.1 NT_011255.14
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the DENND1C gene promoter:
Sp1 Pax-6 AP-4 Tal-1beta NF-E2 p45 E47 YY1 Zic1 NF-E2
Other transcription factors
Search SABiosciences Chromatin IP Primers for DENND1C
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DENND1C |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 19p13.3 Ensembl cytogenetic band: 19p13.3 HGNC cytogenetic band: 19p13.3DENND1C Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 19 GeneLoc Exon Structure GeneLoc location for GC19M006467: view genomic region
(about GC identifiers)
Start:
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6,467,218 bp from pter |
End:
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6,482,568 bp from pter |
Size:
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15,351 bases |
Orientation:
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minus strand |
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Proteins
for DENND1C gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: DEN1C_HUMAN, Q8IV53 (See
protein sequence)Recommended Name: DENN domain-containing protein 1C Size: 801 amino acids; 87065 Da
Subunit: Exhibits low nucleotide-independent RAB35-binding activity. Interacts with clathrin heavy chain/CLTC and withAP2A2, but not with AP2B1
Subcellular location: Cytoplasm, cytosol (By similarity). Cytoplasmic vesicle, clathrin-coated vesicle (By similarity)
Sequence caution: Sequence=BAB15475.1; Type=Frameshift; Positions=788;
Secondary accessions: B4E051 D3PFD4 Q8NDB1 Q9H5Z2Alternative splicing: 2 isoforms: Q8IV53-1 Q8IV53-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for DENND1C: NX_Q8IV53
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8IV53
DENND1C Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_079174.2
ENSEMBL proteins: ENSP00000370889 ENSP00000465675 ENSP00000437805 ENSP00000467008 ENSP00000466334 ENSP00000466583 ENSP00000466394
Human Recombinant Protein Products for DENND1C:
Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005829 | cytosol |
IEA | -- | | GO:0030136 | clathrin-coated vesicle |
IEA | -- |
DENND1C for ontologies About GeneDecksing
DENND1C Antibody Products:
Assay Products for DENND1C: |
Protein
Domains /
Families
for DENND1C gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
DENND1C for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8IV53ProtoNet protein and cluster: Q8IV53 UniProtKB/Swiss-Prot: DEN1C_HUMAN, Q8IV53Similarity: Contains 1 dDENN domainSimilarity: Contains 1 DENN domainSimilarity: Contains 1 uDENN domain |
Function
for DENND1C gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase,
shRNA from
OriGene,
Sirion Biotech,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Sirion Biotech,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
Sirion Biotech,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Molecular Function:
UniProtKB/Swiss-Prot Summary: DEN1C_HUMAN, Q8IV53Function: Guanine nucleotide exchange factor (GEF) which may activate RAB8A, RAB13 and RAB35. Promotes the exchange ofGDP to GTP, converting inactive GDP-bound Rab proteins into their active GTP-bound form Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005085 | guanyl-nucleotide exchange factor activity |
-- | -- | | GO:0017112 | Rab guanyl-nucleotide exchange factor activity |
IDA | -- |
DENND1C for ontologies About GeneDecksing
Phenotypes:
1 GenomeRNAi human phenotype for DENND1C:
Animal Models:
Clone
Products: |  | Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore | |  | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DENND1C (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DENND1C (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling 
| |  | GenScript: all cDNA clones in your preferred vector: DENND1C (NM_024898) | |  | Browse Sino Biological Human cDNA Clones | |  | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DENND1C | |  | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DENND1C |
In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DENND1C |
|
Pathways & Interactions
for DENND1C gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
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Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DENND1C
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
1 Interacting protein for DENND1C (ENSP000003708894) via UniProtKB, MINT, STRING, and/or I2DAbout this table
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Drugs & Compounds
for DENND1C gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for DENND1C
Search CenterWatch for drugs/clinical trials and news about DENND1C / DEN1C
|
Transcripts
for DENND1C gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
Sirion Biotech,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for DENND1C gene: NM_024898.2 Unigene Cluster for DENND1C: DENN/MADD domain containing 1C Hs.236449 [show with all ESTs]Unigene Representative Sequence: AL71377014 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000590444 ENST00000381480(uc002mfb.3 uc002mfc.3 uc002mfd.3 uc002mfe.3 uc010xje.2)
ENST00000590818 ENST00000590867 ENST00000543576 ENST00000591795 ENST00000588988
ENST00000592543 ENST00000589491 ENST00000590173 ENST00000586046 ENST00000591030
ENST00000590473 ENST00000588421
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DENND1C (see all 3)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DENND1C (see all 2)
OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: DENND1C (NM_024898) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DENND1C | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DENND1C |
Additional cDNA sequence: AK026410.1 AK055820.1 AK225623.1 AK303226.1 AK303509.1 AL713770.1 AL834293.1 BC033437.1 BX647304.1 13 DOTS entries: DT.92420956 DT.455753 DT.100776748 DT.97840598 DT.99966553 DT.121448523 DT.121448490 DT.121448552 DT.95174165 DT.100677014 DT.95174168 DT.95219297 DT.303758 24/89 AceView cDNA sequences (see all 89): AW024310 AK055820 BX647304 AI540133 CB047062 BQ710519 BC033437 BG744050 AL713770 AL834293 AA688049 BQ053864 AW024298 BP338858 AA806897 BE674790 BM923037 BE167657 AA845903 BI759616 AW105009 CD632334 BU899317 BV192541
GeneLoc Exon Structure
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Expression
for DENND1C gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| DENND1C expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: GGAGCCAAGA
About this image
See DENND1C Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for DENND1C
SOURCE GeneReport for Unigene cluster: Hs.236449
SABiosciences Custom PCR Arrays for DENND1C
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DENND1C
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat DENND1C | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DENND1C | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DENND1C | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DENND1C |
Orthologs
for DENND1C gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of animals.
Orthologs for DENND1C gene from 5/18 species (see all 18) About this table
ENSEMBL Gene Tree for DENND1C (if available)
TreeFam Gene Tree for DENND1C (if available) |
Paralogs
for DENND1C gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for DENND1C gene
- ST52 DENND5A2 DENND2D2 DENND2A2 DENND32 DENND4A2 DENND4B2 DENND1B2
- DENND1A2 DENND5B2 DENND4C2 DENND2C2
2 SIMAP similar genes for DENND1C using alignment to 7 protein entries: DEN1C_HUMAN (see all proteins):DENND1B DENND1A
DENND1C for paralogs About GeneDecksing
1 Pseudogenes.org Pseudogene for DENND1C
PGOHUM00000243228
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Genomic Variants
for DENND1C gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 19 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for DENND1C (6467218 - 6482568 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 1 variation for DENND1C
1 Indel: 45811 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DENND1C |
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Disorders
/ Diseases
for DENND1C gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 DENND1C for disorders About MalaCards
DENND1C for disorders About GeneDecksing
OMIM gene information: 613634
OMIM disorders: --
Export disorders for DENND1C gene to outside databases
|
Publications
for DENND1C gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for DENND1C gene integrated from 9 sources:
(articles sorted by number of sources associating them with DENND1C) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- The connecdenn family: Rab35 guanine nucleotide exchange factors interfacing with the clathrin machinery. (PubMed id 20154091)1, 2 Marat A.L. and McPherson P.S. (2010)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
- Connecdenn 3/DENND1C binds actin linking Rab35 activat ion to the actin cytoskeleton. (PubMed id 22072793)1 Marat A.L....McPherson P.S. (2012)
- Interactions of pathological hallmark proteins: tubul in polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PubMed id 21832049)1 OlA!h J....OvA!di J. (2011)
- Family-wide characterization of the DENN domain Rab GDP-GTP exchange factors. (PubMed id 20937701)2 Yoshimura S.... Barr F.A. (2010)
- Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
- The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S....Malek J. (2004)
- Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PubMed id 8125298)1 Maruyama K. and Sugano S. (1994)
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External Searches for DENND1C gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing DENND1C gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing DENND1C gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DENND1C gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for DENND1C | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for DENND1C gene:
Search GeneIP for patents involving DENND1C
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for DENND1C gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
About This Section
|
 | |
 | |
 |
| | |  | Browse OriGene Antibodies | | OriGene shRNA RFP for DENND1C | | | OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DENND1C | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DENND1C | | | OriGene Protein Over-expression Lysate for DENND1C | | Browse OriGene Fluorogenic Cell Assay Kits | | | OriGene siRNA for DENND1C | | OriGene 3'-UTR Clone for DENND1C | | | OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DENND1C | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DENND1C | | | Browse OriGene GFP tagged cDNA clones in CMV expression vector | | Browse OriGene MicroRNA Expression Plasmids | | | Browse OriGene basic RS shRNAs | | Browse OriGene validated miRNA SYBR primer pairs | | | OriGene Purified Protein for DENND1C | | OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
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 | | | DENND1C Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DENND1C |
|  |  |  |  | | | | Search ThermoFisher Antibodies for DENND1C |
| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DENND1C |
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