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Aliases for DEFT1P2 Gene

Aliases for DEFT1P2 Gene

  • Defensin, Theta 1 Pseudogene 2 2 3

External Ids for DEFT1P2 Gene

Summaries for DEFT1P2 Gene

GeneCards Summary for DEFT1P2 Gene

DEFT1P2 (Defensin, Theta 1 Pseudogene 2) is a Pseudogene. Diseases associated with DEFT1P2 include hiv-1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFT1P2 Gene

Genomics for DEFT1P2 Gene

Genomic Location for DEFT1P2 Gene

Start:
7,006,281 bp from pter
End:
7,008,824 bp from pter
Size:
2,544 bases
Orientation:
Minus strand

Genomic View for DEFT1P2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DEFT1P2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFT1P2 Gene

No data available for Regulatory Elements for DEFT1P2 Gene

Proteins for DEFT1P2 Gene

Post-translational modifications for DEFT1P2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFT1P2 Gene

Domains for DEFT1P2 Gene

No data available for Gene Families , Protein Domains and UniProtKB/Swiss-Prot for DEFT1P2 Gene

Function for DEFT1P2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DEFT1P2 Gene

Localization for DEFT1P2 Gene

No data available for Gene Ontology (GO) - Cellular Components for DEFT1P2 Gene

Pathways for DEFT1P2 Gene

SuperPathways for DEFT1P2 Gene

No Data Available

Interacting Proteins for DEFT1P2 Gene

Gene Ontology (GO) - Biological Process for DEFT1P2 Gene

None

No data available for Pathways by source for DEFT1P2 Gene

Transcripts for DEFT1P2 Gene

mRNA/cDNA for DEFT1P2 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFT1P2 Gene

No ASD Table

Relevant External Links for DEFT1P2 Gene

GeneLoc Exon Structure for
DEFT1P2
ECgene alternative splicing isoforms for
DEFT1P2

Expression for DEFT1P2 Gene

mRNA expression in normal human tissues for DEFT1P2 Gene

SOURCE GeneReport for Unigene cluster for DEFT1P2 Gene Hs.690009

genes like me logo Genes that share expressions with DEFT1P2: view

Orthologs for DEFT1P2 Gene

Evolution for DEFT1P2 Gene

ENSEMBL:
Gene Tree for DEFT1P2 (if available)
TreeFam:
Gene Tree for DEFT1P2 (if available)

No data available for Orthologs for DEFT1P2 Gene

Paralogs for DEFT1P2 Gene

No data available for Paralogs for DEFT1P2 Gene

Variants for DEFT1P2 Gene

Sequence variations from dbSNP and Humsavar for DEFT1P2 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs57102416 -- 7,009,188(+) TCTGT(G/T)AGAGA upstream-variant-2KB
rs58001249 -- 7,009,207(+) CAAGT(C/T)TGACA upstream-variant-2KB
rs58068619 -- 7,009,484(+) TAGGA(C/G)CACTG upstream-variant-2KB
rs58667424 -- 7,009,290(+) AGACA(C/T)CAAAG upstream-variant-2KB
rs58880877 -- 7,009,440(+) CCTCA(C/T)TGCTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DEFT1P2 Gene

Variant ID Type Subtype PubMed ID
nsv465436 CNV Gain 19166990
esv2752262 CNV Gain 17911159
dgv7656n71 CNV Gain 21882294
dgv7657n71 CNV Gain 21882294
nsv428194 CNV Gain+Loss 18775914
nsv528374 CNV Gain 19592680
dgv2190e1 CNV Complex 17122850
essv14510 CNV CNV 17122850
dgv2191e1 CNV Complex 17122850
nsv831221 CNV Gain 17160897
nsv890068 CNV Gain 21882294
nsv6060 CNV Loss 18451855
nsv21 CNV Loss 15895083
nsv890069 CNV Gain 21882294
nsv527917 CNV Gain 19592680
esv21544 CNV Gain+Loss 19812545
nsv820476 CNV Duplication 20802225
nsv8278 CNV Gain+Loss 18304495
nsv515096 CNV Complex 21397061
nsv471499 CNV Duplication 19718026
nsv437041 CNV Loss 16327808
esv2736554 CNV Deletion 23290073
nsv435861 CNV Deletion 17901297
nsv6062 CNV Insertion 18451855
nsv22 CNV Insertion 15895083
nsv6064 CNV Insertion 18451855
nsv890070 CNV Loss 21882294
nsv890071 CNV Gain 21882294

Relevant External Links for DEFT1P2 Gene

HapMap Linkage Disequilibrium report
DEFT1P2

Disorders for DEFT1P2 Gene

(1) MalaCards Diseases for DEFT1P2 Gene

Search for DEFT1P2 Gene in MalaCards »
genes like me logo Genes that share disorders with DEFT1P2: view

No data available for UniProtKB/Swiss-Prot for DEFT1P2 Gene

Publications for DEFT1P2 Gene

  1. Copy number polymorphism and expression level variation of the human alpha-defensin genes DEFA1 and DEFA3. (PMID: 15944200) Aldred P.M. … Armour J.A. (Hum. Mol. Genet. 2005) 2 3
  2. Inter-population variability of DEFA3 gene absence: correlation with haplotype structure and population variability. (PMID: 17214878) Ballana E. … Estivill X. (BMC Genomics 2007) 2 3
  3. Proflie of Human I^-Defensins 1,2 and Proinflammatory Cytokines (TNF-I+, IL-6) in Patients with Chronic Kidney Disease. (PMID: 24356550) Oh D.J. … Woo Y.S. (Kidney Blood Press. Res. 2013) 3
  4. Retrocyclin: a primate peptide that protects cells from infection by T- and M-tropic strains of HIV-1. (PMID: 11854483) Cole A.M. … Lehrer R.I. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for DEFT1P2 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate DEFT1P2
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for DEFT1P2
    • Block miRNA regulation of DEFT1P2 using miScript Target Protectors

    Sources for DEFT1P2 Gene

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