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Aliases for DEFT1P Gene

Aliases for DEFT1P Gene

  • Defensin, Theta 1 Pseudogene 2 3
  • Defensin-Related Pseudogene 3
  • Retrocyclin Pseudogene 3
  • Circular Minidefensin 3
  • Defensin, Theta 1 2
  • Pro-Retrocyclin 3
  • Demidefensin 3
  • Retrocyclin 2
  • DEFQ1 3
  • DEFT1 3

External Ids for DEFT1P Gene

Previous HGNC Symbols for DEFT1P Gene

  • DEFQ1
  • DEFT1

Previous GeneCards Identifiers for DEFT1P Gene

  • GC00U921565
  • GC08U900587
  • GC08M006823
  • GC08M006844

Summaries for DEFT1P Gene

GeneCards Summary for DEFT1P Gene

DEFT1P (Defensin, Theta 1 Pseudogene) is a Pseudogene. Diseases associated with DEFT1P include hiv-1.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFT1P Gene

Genomics for DEFT1P Gene

Genomic Location for DEFT1P Gene

Start:
6,987,178 bp from pter
End:
6,989,721 bp from pter
Size:
2,544 bases
Orientation:
Minus strand

Genomic View for DEFT1P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DEFT1P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFT1P Gene

No data available for Regulatory Elements for DEFT1P Gene

Proteins for DEFT1P Gene

Post-translational modifications for DEFT1P Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFT1P Gene

Domains for DEFT1P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DEFT1P Gene

Function for DEFT1P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DEFT1P Gene

Localization for DEFT1P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFT1P Gene

Pathways for DEFT1P Gene

SuperPathways for DEFT1P Gene

No Data Available

Interacting Proteins for DEFT1P Gene

Gene Ontology (GO) - Biological Process for DEFT1P Gene

None

No data available for Pathways by source for DEFT1P Gene

Transcripts for DEFT1P Gene

mRNA/cDNA for DEFT1P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFT1P Gene

No ASD Table

Relevant External Links for DEFT1P Gene

GeneLoc Exon Structure for
DEFT1P
ECgene alternative splicing isoforms for
DEFT1P

Expression for DEFT1P Gene

mRNA expression in normal human tissues for DEFT1P Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DEFT1P Gene

This gene is overexpressed in Whole Blood (48.1).

SOURCE GeneReport for Unigene cluster for DEFT1P Gene Hs.681792

genes like me logo Genes that share expressions with DEFT1P: view

In Situ Assay Products

No data available for Protein expression and mRNA Expression by UniProt/SwissProt for DEFT1P Gene

Orthologs for DEFT1P Gene

Evolution for DEFT1P Gene

ENSEMBL:
Gene Tree for DEFT1P (if available)
TreeFam:
Gene Tree for DEFT1P (if available)

No data available for Orthologs for DEFT1P Gene

Paralogs for DEFT1P Gene

No data available for Paralogs for DEFT1P Gene

Variants for DEFT1P Gene

Sequence variations from dbSNP and Humsavar for DEFT1P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2615791 -- 6,990,807(-) CTGCC(C/T)GGCAT upstream-variant-2KB
rs2615792 -- 6,990,776(-) TCACC(A/G)CAGGT upstream-variant-2KB
rs2615795 -- 6,989,856(+) TGAGA(A/T)ATTTG upstream-variant-2KB
rs2978913 -- 6,991,353(-) TGCTG(C/T)GGAAA upstream-variant-2KB
rs2979412 -- 6,991,416(-) GAACT(A/G)TGTGT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DEFT1P Gene

Variant ID Type Subtype PubMed ID
nsv465436 CNV Gain 19166990
esv2752262 CNV Gain 17911159
dgv7656n71 CNV Gain 21882294
dgv7657n71 CNV Gain 21882294
nsv428194 CNV Gain+Loss 18775914
nsv528374 CNV Gain 19592680
dgv2190e1 CNV Complex 17122850
essv14510 CNV CNV 17122850
dgv2191e1 CNV Complex 17122850
nsv831221 CNV Gain 17160897
nsv890068 CNV Gain 21882294
nsv6060 CNV Loss 18451855
nsv21 CNV Loss 15895083
nsv890069 CNV Gain 21882294
nsv527917 CNV Gain 19592680
esv21544 CNV Gain+Loss 19812545
nsv820476 CNV Duplication 20802225
nsv8278 CNV Gain+Loss 18304495
nsv515096 CNV Complex 21397061
nsv471499 CNV Duplication 19718026
nsv437041 CNV Loss 16327808
esv2736554 CNV Deletion 23290073
nsv435861 CNV Deletion 17901297
nsv6062 CNV Insertion 18451855
nsv22 CNV Insertion 15895083
nsv6064 CNV Insertion 18451855
nsv890070 CNV Loss 21882294
nsv890071 CNV Gain 21882294

Relevant External Links for DEFT1P Gene

HapMap Linkage Disequilibrium report
DEFT1P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DEFT1P Gene

Disorders for DEFT1P Gene

MalaCards: The human disease database

MalaCards: The human disease database. (1) Diseases for DEFT1P Gene including...

Search for DEFT1P Gene in MalaCards »
genes like me logo Genes that share disorders with DEFT1P: view

No data available for UniProtKB/Swiss-Prot for DEFT1P Gene

Publications for DEFT1P Gene

  1. Retrocyclin: a primate peptide that protects cells from infection by T- and M-tropic strains of HIV-1. (PMID: 11854483) Cole A.M. … Lehrer R.I. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 23
  2. Evolution of primate theta-defensins: a serpentine path to a sweet tooth. (PMID: 15019196) Nguyen T.X. … Lehrer R.I. (Peptides 2003) 2 3
  3. Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence. (PMID: 15588320) Taudien S. … Platzer M. (BMC Genomics 2004) 2 3
  4. Defensins of vertebrate animals. (PMID: 11790538) Lehrer R.I. … Ganz T. (Curr. Opin. Immunol. 2002) 3 23
  5. Cyclic and acyclic defensins inhibit human immunodeficiency virus type-1 replication by different mechanisms. (PMID: 20305815) Seidel A. … Camerini D. (PLoS ONE 2010) 3

Products for DEFT1P Gene

Sources for DEFT1P Gene

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