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Aliases for DEFB135 Gene

Aliases for DEFB135 Gene

  • Defensin, Beta 135 2 3 4
  • Beta-Defensin 135 3
  • Beta-Defensin 136 3
  • DEFB136 3

External Ids for DEFB135 Gene

Summaries for DEFB135 Gene

Entrez Gene Summary for DEFB135 Gene

  • Defensins are cysteine-rich cationic polypeptides that are important in the immunologic response to invading microorganisms. The antimicrobial protein encoded by this gene is secreted and is a member of the beta defensin protein family. Beta defensin genes are found in several clusters throughout the genome, with this gene mapping to a cluster at 8p23. [provided by RefSeq, Nov 2014]

GeneCards Summary for DEFB135 Gene

DEFB135 (Defensin, Beta 135) is a Protein Coding gene. Among its related pathways are Defensins and Defensins.

UniProtKB/Swiss-Prot for DEFB135 Gene

  • Has antibacterial activity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFB135 Gene

Genomics for DEFB135 Gene

Genomic Location for DEFB135 Gene

Start:
11,982,321 bp from pter
End:
11,984,590 bp from pter
Size:
2,270 bases
Orientation:
Plus strand

Genomic View for DEFB135 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DEFB135 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFB135 Gene

No data available for Regulatory Elements for DEFB135 Gene

Proteins for DEFB135 Gene

  • Protein details for DEFB135 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q30KP9-DB135_HUMAN
    Recommended name:
    Beta-defensin 135
    Protein Accession:
    Q30KP9
    Secondary Accessions:
    • Q4QY37

    Protein attributes for DEFB135 Gene

    Size:
    77 amino acids
    Molecular mass:
    8754 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DEFB135 Gene

Proteomics data for DEFB135 Gene at MOPED

Post-translational modifications for DEFB135 Gene

No Post-translational modifications

Other Protein References for DEFB135 Gene

ENSEMBL proteins:
Reactome Protein details:
REFSEQ proteins:

No data available for DME Specific Peptides for DEFB135 Gene

Domains for DEFB135 Gene

Gene Families for DEFB135 Gene

HGNC:
  • DEFB :Defensins, beta

Protein Domains for DEFB135 Gene

InterPro:
ProtoNet:

UniProtKB/Swiss-Prot:

DB135_HUMAN
Family:
  • Belongs to the beta-defensin family.:
    • Q30KP9
genes like me logo Genes that share domains with DEFB135: view

Function for DEFB135 Gene

Molecular function for DEFB135 Gene

UniProtKB/Swiss-Prot Function: Has antibacterial activity.

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DEFB135 Gene

Localization for DEFB135 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DEFB135 Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DEFB135 Gene COMPARTMENTS Subcellular localization image for DEFB135 gene
Compartment Confidence
extracellular 3

Gene Ontology (GO) - Cellular Components for DEFB135 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0009986 cell surface IBA --
genes like me logo Genes that share ontologies with DEFB135: view

Pathways for DEFB135 Gene

SuperPathways for DEFB135 Gene

Superpath Contained pathways
1 Defensins
.80
genes like me logo Genes that share pathways with DEFB135: view

Pathways by source for DEFB135 Gene

2 Reactome pathways for DEFB135 Gene

Interacting Proteins for DEFB135 Gene

Gene Ontology (GO) - Biological Process for DEFB135 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0042742 defense response to bacterium IBA --
GO:0045087 innate immune response IBA --
genes like me logo Genes that share ontologies with DEFB135: view

Transcripts for DEFB135 Gene

mRNA/cDNA for DEFB135 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFB135 Gene

No ASD Table

Relevant External Links for DEFB135 Gene

GeneLoc Exon Structure for
DEFB135
ECgene alternative splicing isoforms for
DEFB135

Expression for DEFB135 Gene

mRNA expression in normal human tissues for DEFB135 Gene

SOURCE GeneReport for Unigene cluster for DEFB135 Gene Hs.558284

genes like me logo Genes that share expressions with DEFB135: view

Orthologs for DEFB135 Gene

This gene was present in the common ancestor of human and mouse.

Orthologs for DEFB135 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 37
  • 98 (a)
OneToMany
DEFB135 36
  • 90.48 (n)
  • 85.71 (a)
DEFB135 37
  • 99 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Defb30 16
Defb30 37
  • 48 (a)
OneToOne
Species with no ortholog for DEFB135:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DEFB135 Gene

ENSEMBL:
Gene Tree for DEFB135 (if available)
TreeFam:
Gene Tree for DEFB135 (if available)

Paralogs for DEFB135 Gene

Selected SIMAP similar genes for DEFB135 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with DEFB135: view

No data available for Paralogs for DEFB135 Gene

Variants for DEFB135 Gene

Sequence variations from dbSNP and Humsavar for DEFB135 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs4262292 -- 11,981,157(+) CTTGA(C/T)CTCCT upstream-variant-2KB
rs4455884 -- 11,983,066(-) TGATA(C/T)GCTTT intron-variant
rs4458915 -- 11,983,042(-) TGAGG(A/C)AAAGG intron-variant
rs4458916 -- 11,982,922(-) GTCCA(C/G)AGAAT intron-variant
rs6601641 -- 11,983,376(+) CAAGC(A/G)TGAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DEFB135 Gene

Variant ID Type Subtype PubMed ID
nsv890366 CNV Gain 21882294
nsv890369 CNV Loss 21882294
nsv516685 CNV Gain+Loss 19592680
nsv428195 CNV Gain 18775914
dgv2199e1 CNV Complex 17122850
dgv2200e1 CNV Complex 17122850
dgv7704n71 CNV Gain 21882294
esv2736614 CNV Deletion 23290073
essv15113 CNV CNV 17122850
dgv1269e199 CNV Deletion 23128226
esv3862 CNV Duplication 18987735
nsv465468 CNV Gain 19166990
nsv890372 CNV Gain 21882294

Relevant External Links for DEFB135 Gene

HapMap Linkage Disequilibrium report
DEFB135

Disorders for DEFB135 Gene

No disorders were found for DEFB135 Gene.

No data available for UniProtKB/Swiss-Prot for DEFB135 Gene

Publications for DEFB135 Gene

  1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. (PMID: 16033865) Patil A.A. … Zhang G. (Physiol. Genomics 2005) 2 3 4
  2. Discovery of five conserved beta-defensin gene clusters using a computational search strategy. (PMID: 11854508) Schutte B.C. … McCray P.B. Jr. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for DEFB135 Gene

Sources for DEFB135 Gene

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