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Aliases for DEFB109P1B Gene

Aliases for DEFB109P1B Gene

  • Defensin, Beta 109, Pseudogene 1B 2 3
  • DEFB109 3 4
  • Defensin, Beta 109, Pseudogene 1/1B 4
  • Defensin, Beta 9 Pseudogene 3
  • DEFB109P1 DEFB109P1B 4
  • Defensin, Beta 109 4
  • DEF109P1B 3
  • DEFB109A 4

External Ids for DEFB109P1B Gene

Previous GeneCards Identifiers for DEFB109P1B Gene

  • GC08P007158

Summaries for DEFB109P1B Gene

GeneCards Summary for DEFB109P1B Gene

DEFB109P1B (Defensin, Beta 109, Pseudogene 1B) is a Pseudogene.

UniProtKB/Swiss-Prot for DEFB109P1B Gene

  • Has antibacterial activity.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFB109P1B Gene

Genomics for DEFB109P1B Gene

Genomic Location for DEFB109P1B Gene

Start:
7,312,846 bp from pter
End:
7,319,951 bp from pter
Size:
7,106 bases
Orientation:
Plus strand

Genomic View for DEFB109P1B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DEFB109P1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFB109P1B Gene

No data available for Regulatory Elements for DEFB109P1B Gene

Proteins for DEFB109P1B Gene

  • Protein details for DEFB109P1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q30KR1-DB109_HUMAN
    Recommended name:
    Beta-defensin 109
    Protein Accession:
    Q30KR1
    Secondary Accessions:

    Protein attributes for DEFB109P1B Gene

    Size:
    87 amino acids
    Molecular mass:
    9886 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DEFB109P1B Gene

Proteomics data for DEFB109P1B Gene at MOPED

Post-translational modifications for DEFB109P1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFB109P1B Gene

Domains for DEFB109P1B Gene

Gene Families for DEFB109P1B Gene

HGNC:
  • DEFB :Defensins, beta

Protein Domains for DEFB109P1B Gene

Graphical View of Domain Structure for InterPro Entry

Q30KR1

UniProtKB/Swiss-Prot:

DB109_HUMAN :
  • Q30KR1
Family:
  • Belongs to the beta-defensin family.
genes like me logo Genes that share domains with DEFB109P1B: view

No data available for Suggested Antigen Peptide Sequences for DEFB109P1B Gene

Function for DEFB109P1B Gene

Molecular function for DEFB109P1B Gene

UniProtKB/Swiss-Prot Function: Has antibacterial activity.

Animal Model Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DEFB109P1B Gene

Localization for DEFB109P1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for DEFB109P1B Gene

Secreted.

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFB109P1B Gene

Pathways for DEFB109P1B Gene

SuperPathways for DEFB109P1B Gene

No Data Available

Interacting Proteins for DEFB109P1B Gene

Gene Ontology (GO) - Biological Process for DEFB109P1B Gene

None

No data available for Pathways by source for DEFB109P1B Gene

Transcripts for DEFB109P1B Gene

mRNA/cDNA for DEFB109P1B Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DEFB109P1B Gene

Defensin, beta 109, pseudogene 1B:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate DEFB109P1B
    • Block miRNA regulation of DEFB109P1B using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for DEFB109P1B

    Primer Products

    • OriGene qSTAR qPCR primer pairs in human,mouse,rat for DEFB109P1B
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for DEFB109P1B Gene

    No ASD Table

    Relevant External Links for DEFB109P1B Gene

    GeneLoc Exon Structure for
    DEFB109P1B
    ECgene alternative splicing isoforms for
    DEFB109P1B

    Expression for DEFB109P1B Gene

    mRNA expression in normal human tissues for DEFB109P1B Gene

    SOURCE GeneReport for Unigene cluster for DEFB109P1B Gene Hs.616079

    genes like me logo Genes that share expressions with DEFB109P1B: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for DEFB109P1B Gene

    Orthologs for DEFB109P1B Gene

    Evolution for DEFB109P1B Gene

    ENSEMBL:
    Gene Tree for DEFB109P1B (if available)
    TreeFam:
    Gene Tree for DEFB109P1B (if available)

    No data available for Orthologs for DEFB109P1B Gene

    Paralogs for DEFB109P1B Gene

    Selected SIMAP similar genes for DEFB109P1B Gene using alignment to 1 proteins:

    genes like me logo Genes that share paralogs with DEFB109P1B: view

    No data available for Paralogs for DEFB109P1B Gene

    Variants for DEFB109P1B Gene

    Structural Variations from Database of Genomic Variants (DGV) for DEFB109P1B Gene

    Variant ID Type Subtype PubMed ID
    nsv428194 CNV Gain+Loss 18775914
    dgv2191e1 CNV Complex 17122850
    nsv515968 CNV Gain+Loss 19592680
    nsv821656 CNV Gain 15273396
    dgv2192e1 CNV Complex 17122850
    nsv890074 CNV Gain 21882294
    esv2736558 CNV Deletion 23290073
    nsv508495 CNV Loss 20534489
    nsv510977 CNV Complex 20534489
    dgv2193e1 CNV Complex 17122850
    dgv7659n71 CNV Gain 21882294
    esv21583 CNV Gain+Loss 19812545
    nsv509249 CNV Insertion 20534489
    nsv890078 CNV Gain 21882294
    esv33606 CNV Gain+Loss 17666407
    nsv831223 CNV Loss 17160897
    dgv7661n71 CNV Gain 21882294
    dgv7662n71 CNV Gain 21882294
    nsv8281 CNV Gain+Loss 18304495
    nsv831224 CNV Gain+Loss 17160897
    nsv831225 CNV Loss 17160897
    nsv890085 CNV Loss 21882294
    dgv7663n71 CNV Loss 21882294
    dgv7664n71 CNV Loss 21882294
    esv2675221 CNV Deletion 23128226
    dgv2194e1 CNV Complex 17122850
    nsv471650 CNV Gain+Loss 15918152
    dgv2195e1 CNV Complex 17122850
    nsv515099 CNV Complex 21397061
    dgv7665n71 CNV Gain 21882294
    dgv7666n71 CNV Gain 21882294
    dgv7667n71 CNV Gain+Loss 21882294
    esv2752265 CNV Gain 17911159
    esv2752266 CNV Loss 17911159
    esv25631 CNV Gain+Loss 19812545
    dgv7685n71 CNV Gain 21882294
    nsv890270 CNV Loss 21882294
    dgv7686n71 CNV Gain 21882294
    dgv7691n71 CNV Gain 21882294
    dgv10n29 CNV Gain 16826518
    nsv471651 CNV Gain+Loss 15918152
    nsv890322 CNV Loss 21882294
    dgv1265e199 CNV Deletion 23128226
    nsv821327 CNV Deletion 20802225
    esv2422039 CNV Deletion 20811451
    nsv469790 CNV Loss 16826518
    essv20225 CNV CNV 17122850
    nsv442400 CNV CNV 18776908

    Relevant External Links for DEFB109P1B Gene

    HapMap Linkage Disequilibrium report
    DEFB109P1B

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations from dbSNP and Humsavar for DEFB109P1B Gene

    Disorders for DEFB109P1B Gene

    No disorders were found for DEFB109P1B Gene.

    No data available for UniProtKB/Swiss-Prot for DEFB109P1B Gene

    Publications for DEFB109P1B Gene

    1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. (PMID: 16033865) Patil A.A. … Zhang G. (Physiol. Genomics 2005) 3 4
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

    Products for DEFB109P1B Gene

    • QIAGEN qRT-PCR Assays for microRNAs that regulate DEFB109P1B
      • QuantiTect SYBR Green Assays in human,mouse,rat
      • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
      • QuantiFast Probe-based Assays in human,mouse,rat
      • Predesigned siRNA for gene silencing in human,mouse,rat for DEFB109P1B
      • Block miRNA regulation of DEFB109P1B using miScript Target Protectors

      Sources for DEFB109P1B Gene

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