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Aliases for DEFB109P1B Gene

Aliases for DEFB109P1B Gene

  • Defensin Beta 109 Pseudogene 1B 2 3 5
  • DEFB109 3 4
  • Defensin, Beta 109, Pseudogene 1/1B 4
  • Defensin, Beta 109, Pseudogene 1B 2
  • Defensin, Beta 9 Pseudogene 3
  • DEFB109P1 DEFB109P1B 4
  • Defensin, Beta 109 4
  • DEF109P1B 3
  • DEFB109A 4

External Ids for DEFB109P1B Gene

Previous GeneCards Identifiers for DEFB109P1B Gene

  • GC08P007158

Summaries for DEFB109P1B Gene

GeneCards Summary for DEFB109P1B Gene

DEFB109P1B (Defensin Beta 109 Pseudogene 1B) is a Pseudogene.

UniProtKB/Swiss-Prot for DEFB109P1B Gene

  • Has antibacterial activity.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFB109P1B Gene

Genomics for DEFB109P1B Gene

Genomic Location for DEFB109P1B Gene

Chromosome:
8
Start:
7,312,846 bp from pter
End:
7,319,951 bp from pter
Size:
7,106 bases
Orientation:
Plus strand

Genomic View for DEFB109P1B Gene

Genes around DEFB109P1B on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEFB109P1B Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEFB109P1B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFB109P1B Gene

No data available for Regulatory Elements for DEFB109P1B Gene

Proteins for DEFB109P1B Gene

  • Protein details for DEFB109P1B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q30KR1-DB109_HUMAN
    Recommended name:
    Beta-defensin 109
    Protein Accession:
    Q30KR1

    Protein attributes for DEFB109P1B Gene

    Size:
    87 amino acids
    Molecular mass:
    9886 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DEFB109P1B Gene

Post-translational modifications for DEFB109P1B Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFB109P1B Gene

Domains & Families for DEFB109P1B Gene

Gene Families for DEFB109P1B Gene

Protein Domains for DEFB109P1B Gene

Blocks:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

Q30KR1

UniProtKB/Swiss-Prot:

DB109_HUMAN :
  • Belongs to the beta-defensin family.
Family:
  • Belongs to the beta-defensin family.
genes like me logo Genes that share domains with DEFB109P1B: view

No data available for Suggested Antigen Peptide Sequences for DEFB109P1B Gene

Function for DEFB109P1B Gene

Molecular function for DEFB109P1B Gene

UniProtKB/Swiss-Prot Function:
Has antibacterial activity.

Phenotypes for DEFB109P1B Gene

GenomeRNAi human phenotypes for DEFB109P1B:
genes like me logo Genes that share phenotypes with DEFB109P1B: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEFB109P1B Gene

Localization for DEFB109P1B Gene

Subcellular locations from UniProtKB/Swiss-Prot for DEFB109P1B Gene

No data available for Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFB109P1B Gene

Pathways & Interactions for DEFB109P1B Gene

SuperPathways for DEFB109P1B Gene

No Data Available

Interacting Proteins for DEFB109P1B Gene

Gene Ontology (GO) - Biological Process for DEFB109P1B Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DEFB109P1B Gene

Transcripts for DEFB109P1B Gene

mRNA/cDNA for DEFB109P1B Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DEFB109P1B Gene

Defensin, beta 109, pseudogene 1B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DEFB109P1B Gene

No ASD Table

Relevant External Links for DEFB109P1B Gene

GeneLoc Exon Structure for
DEFB109P1B
ECgene alternative splicing isoforms for
DEFB109P1B

Expression for DEFB109P1B Gene

mRNA expression in normal human tissues for DEFB109P1B Gene

NURSA nuclear receptor signaling pathways regulating expression of DEFB109P1B Gene:

DEFB109P1B

SOURCE GeneReport for Unigene cluster for DEFB109P1B Gene:

Hs.616079
genes like me logo Genes that share expression patterns with DEFB109P1B: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DEFB109P1B Gene

Orthologs for DEFB109P1B Gene

Evolution for DEFB109P1B Gene

ENSEMBL:
Gene Tree for DEFB109P1B (if available)
TreeFam:
Gene Tree for DEFB109P1B (if available)

No data available for Orthologs for DEFB109P1B Gene

Paralogs for DEFB109P1B Gene

(4) SIMAP similar genes for DEFB109P1B Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with DEFB109P1B: view

No data available for Paralogs for DEFB109P1B Gene

Variants for DEFB109P1B Gene

Sequence variations from dbSNP and Humsavar for DEFB109P1B Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs111245715 -- 7,313,236(+) AATGA(A/G)ATGCC intron-variant
rs111847155 -- 7,312,357(+) ACAAC(A/C)ACAAC intron-variant, upstream-variant-2KB
rs111889623 -- 7,315,477(+) CTGGG(C/T)GACAG intron-variant
rs113874696 -- 7,313,436(+) AATAA(A/G)TGAAA intron-variant
rs140776655 -- 7,315,496(+) CCGTC(-/A)CAAAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DEFB109P1B Gene

Variant ID Type Subtype PubMed ID
dgv11911n54 CNV loss 21841781
dgv11914n54 CNV gain 21841781
dgv11928n54 CNV gain 21841781
dgv11931n54 CNV loss 21841781
dgv1265e199 CNV deletion 23128226
dgv13n29 CNV gain+loss 16826518
dgv2035e212 CNV gain 25503493
dgv262n111 CNV deletion 26073780
dgv3764n106 CNV deletion 24896259
dgv6878n100 CNV gain 25217958
dgv6879n100 CNV gain 25217958
dgv6882n100 CNV gain 25217958
dgv6884n100 CNV gain 25217958
dgv6885n100 CNV gain 25217958
dgv6887n100 CNV loss 25217958
dgv6888n100 CNV gain+loss 25217958
dgv6889n100 CNV loss 25217958
dgv6890n100 CNV gain 25217958
dgv6891n100 CNV gain+loss 25217958
dgv6892n100 CNV loss 25217958
dgv6893n100 CNV gain 25217958
dgv6894n100 CNV gain+loss 25217958
dgv6895n100 CNV loss 25217958
dgv6896n100 CNV gain+loss 25217958
dgv6897n100 CNV gain 25217958
dgv6898n100 CNV loss 25217958
dgv6899n100 CNV gain 25217958
dgv6900n100 CNV gain+loss 25217958
dgv6901n100 CNV gain+loss 25217958
dgv6902n100 CNV gain 25217958
dgv6903n100 CNV loss 25217958
dgv6904n100 CNV gain 25217958
dgv6905n100 CNV gain 25217958
dgv6906n100 CNV gain 25217958
dgv6907n100 CNV loss 25217958
dgv6908n100 CNV gain 25217958
dgv6909n100 CNV gain 25217958
dgv6910n100 CNV gain+loss 25217958
dgv6911n100 CNV loss 25217958
dgv6912n100 CNV loss 25217958
dgv6915n100 CNV gain 25217958
dgv6950n100 CNV loss 25217958
dgv6955n100 CNV gain 25217958
dgv6963n100 CNV loss 25217958
dgv6964n100 CNV gain 25217958
dgv6970n100 CNV gain 25217958
dgv6976n100 CNV loss 25217958
dgv6978n100 CNV loss 25217958
dgv6980n100 CNV gain 25217958
dgv6984n100 CNV gain+loss 25217958
dgv6986n100 CNV loss 25217958
dgv6987n100 CNV loss 25217958
dgv6988n100 CNV loss 25217958
dgv6989n100 CNV gain 25217958
dgv6990n100 CNV loss 25217958
dgv6991n100 CNV loss 25217958
dgv6992n100 CNV gain 25217958
esv21583 CNV gain+loss 19812545
esv2422039 CNV deletion 20811451
esv25631 CNV gain+loss 19812545
esv2675221 CNV deletion 23128226
esv2752265 CNV gain 17911159
esv2752266 CNV loss 17911159
esv2759589 CNV gain+loss 17122850
esv2761169 CNV gain+loss 21179565
esv2764098 CNV gain+loss 21179565
esv33606 CNV gain+loss 17666407
esv3616114 CNV loss 21293372
esv3891318 CNV gain 25118596
esv3891324 CNV gain 25118596
nsv1015205 CNV gain+loss 25217958
nsv1016847 CNV gain 25217958
nsv1018143 CNV gain+loss 25217958
nsv1023986 CNV loss 25217958
nsv1026778 CNV gain 25217958
nsv1027709 CNV gain+loss 25217958
nsv1028208 CNV loss 25217958
nsv1030619 CNV loss 25217958
nsv1031577 CNV gain 25217958
nsv1075106 CNV deletion 25765185
nsv1076047 CNV deletion 25765185
nsv1144219 CNV deletion 24896259
nsv1161709 CNV duplication 26073780
nsv1161710 CNV deletion 26073780
nsv428194 CNV gain+loss 18775914
nsv442400 CNV loss 18776908
nsv469790 CNV loss 16826518
nsv471650 CNV gain+loss 15918152
nsv471651 CNV gain+loss 15918152
nsv508495 CNV deletion 20534489
nsv509249 CNV insertion 20534489
nsv510977 OTHER complex 20534489
nsv515099 CNV gain 21397061
nsv515968 CNV gain+loss 19592680
nsv610137 CNV loss 21841781
nsv610140 CNV loss 21841781
nsv821327 CNV deletion 20802225
nsv821656 CNV gain 15273396
nsv8281 CNV gain+loss 18304495
nsv831223 CNV loss 17160897
nsv831224 CNV gain+loss 17160897
nsv831225 CNV loss 17160897
nsv951091 CNV deletion 24416366
nsv951093 CNV deletion 24416366
nsv967562 CNV duplication 23825009
nsv981904 CNV duplication 23825009

Relevant External Links for DEFB109P1B Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEFB109P1B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DEFB109P1B Gene

Disorders for DEFB109P1B Gene

Relevant External Links for DEFB109P1B

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DEFB109P1B

No disorders were found for DEFB109P1B Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DEFB109P1B Gene

Publications for DEFB109P1B Gene

  1. Cross-species analysis of the mammalian beta-defensin gene family: presence of syntenic gene clusters and preferential expression in the male reproductive tract. (PMID: 16033865) Patil A.A. … Zhang G. (Physiol. Genomics 2005) 3 4 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for DEFB109P1B Gene

Sources for DEFB109P1B Gene

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