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Aliases for DEFA9P Gene

Aliases for DEFA9P Gene

  • Defensin Alpha 9, Pseudogene 2 3 5
  • Defensin, Alpha 9 Pseudogene 2
  • DEFAP2 3

External Ids for DEFA9P Gene

Previous GeneCards Identifiers for DEFA9P Gene

  • GC08U900507
  • GC08M006804
  • GC08M006596
  • GC08M006816

Summaries for DEFA9P Gene

GeneCards Summary for DEFA9P Gene

DEFA9P (Defensin Alpha 9, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFA9P Gene

Genomics for DEFA9P Gene

Regulatory Elements for DEFA9P Gene

Enhancers for DEFA9P Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH08F006958 0.4 ENCODE 0.8 +1.9 1898 0.1 ZNF263 CTCF ZNF654 USF1 KLF17 MAX TRIM22 RAD21 ZNF2 GLIS2 ENSG00000254625 DEFA6 DEFA9P DEFA8P
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DEFA9P on UCSC Golden Path with GeneCards custom track

Genomic Location for DEFA9P Gene

Chromosome:
8
Start:
6,959,289 bp from pter
End:
6,960,161 bp from pter
Size:
873 bases
Orientation:
Minus strand

Genomic View for DEFA9P Gene

Genes around DEFA9P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEFA9P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEFA9P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFA9P Gene

Proteins for DEFA9P Gene

Post-translational modifications for DEFA9P Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFA9P Gene

Domains & Families for DEFA9P Gene

Gene Families for DEFA9P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DEFA9P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DEFA9P Gene

Function for DEFA9P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEFA9P Gene

Localization for DEFA9P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFA9P Gene

Pathways & Interactions for DEFA9P Gene

SuperPathways for DEFA9P Gene

No Data Available

Interacting Proteins for DEFA9P Gene

Gene Ontology (GO) - Biological Process for DEFA9P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DEFA9P Gene

Transcripts for DEFA9P Gene

mRNA/cDNA for DEFA9P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFA9P Gene

No ASD Table

Relevant External Links for DEFA9P Gene

GeneLoc Exon Structure for
DEFA9P
ECgene alternative splicing isoforms for
DEFA9P

Expression for DEFA9P Gene

mRNA expression in normal human tissues for DEFA9P Gene

NURSA nuclear receptor signaling pathways regulating expression of DEFA9P Gene:

DEFA9P

SOURCE GeneReport for Unigene cluster for DEFA9P Gene:

Hs.552565
genes like me logo Genes that share expression patterns with DEFA9P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DEFA9P Gene

Orthologs for DEFA9P Gene

Evolution for DEFA9P Gene

ENSEMBL:
Gene Tree for DEFA9P (if available)
TreeFam:
Gene Tree for DEFA9P (if available)

No data available for Orthologs for DEFA9P Gene

Paralogs for DEFA9P Gene

No data available for Paralogs for DEFA9P Gene

Variants for DEFA9P Gene

Sequence variations from dbSNP and Humsavar for DEFA9P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs10108326 -- 6,959,179(+) CAAGG(A/G)CTTTA downstream-variant-500B
rs10111102 -- 6,959,101(+) TGTTC(C/T)GGTAC downstream-variant-500B
rs10503361 -- 6,958,930(-) GCAAA(C/G)ATAAT downstream-variant-500B
rs10503362 -- 6,958,893(-) GTCAG(C/T)TTCAA downstream-variant-500B
rs1076577 -- 6,959,236(-) GAAGA(C/T)AACTT downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for DEFA9P Gene

Variant ID Type Subtype PubMed ID
dgv6878n100 CNV gain 25217958
dgv6879n100 CNV gain 25217958
esv2752262 CNV gain 17911159
esv2759589 CNV gain+loss 17122850
esv3576520 CNV gain 25503493
nsv1015244 CNV gain 25217958
nsv1019061 CNV loss 25217958
nsv1031577 CNV gain 25217958
nsv21 CNV deletion 15895083
nsv428194 CNV gain+loss 18775914
nsv465436 CNV gain 19166990
nsv465437 CNV gain 19166990
nsv509248 CNV insertion 20534489
nsv524367 CNV loss 19592680
nsv528374 CNV gain 19592680
nsv528781 CNV loss 19592680
nsv6060 CNV deletion 18451855
nsv6061 CNV insertion 18451855
nsv610006 CNV gain 21841781
nsv610007 CNV gain 21841781
nsv610010 CNV gain 21841781
nsv831221 CNV gain 17160897

Relevant External Links for DEFA9P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEFA9P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DEFA9P Gene

Disorders for DEFA9P Gene

Relevant External Links for DEFA9P

Genetic Association Database (GAD)
DEFA9P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DEFA9P

No disorders were found for DEFA9P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DEFA9P Gene

Publications for DEFA9P Gene

  1. Rapid evolution and diversification of mammalian alpha-defensins as revealed by comparative analysis of rodent and primate genes. (PMID: 15494476) Patil A. … Zhang G. (Physiol. Genomics 2004) 2 3 64
  2. Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence. (PMID: 15588320) Taudien S. … Platzer M. (BMC Genomics 2004) 2 3 64
  3. A genome-wide association study in Han Chinese identifies multiple susceptibility loci for IgA nephropathy. (PMID: 22197929) Yu X.Q. … Liu J.J. (Nat. Genet. 2012) 46 64

Products for DEFA9P Gene

Sources for DEFA9P Gene

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