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Aliases for DEFA11P Gene

Aliases for DEFA11P Gene

  • Defensin Alpha 11, Pseudogene 2 3 5
  • Defensin, Alpha 11 Pseudogene 2 3
  • DEFAP3 3

External Ids for DEFA11P Gene

Previous GeneCards Identifiers for DEFA11P Gene

  • GC08U900709
  • GC08M006874
  • GC08M006888

Summaries for DEFA11P Gene

GeneCards Summary for DEFA11P Gene

DEFA11P (Defensin Alpha 11, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFA11P Gene

Genomics for DEFA11P Gene

Genomic Location for DEFA11P Gene

Chromosome:
8
Start:
7,028,601 bp from pter
End:
7,029,489 bp from pter
Size:
889 bases
Orientation:
Minus strand

Genomic View for DEFA11P Gene

Genes around DEFA11P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEFA11P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEFA11P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFA11P Gene

No data available for Regulatory Elements for DEFA11P Gene

Proteins for DEFA11P Gene

Post-translational modifications for DEFA11P Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFA11P Gene

Domains & Families for DEFA11P Gene

Gene Families for DEFA11P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DEFA11P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DEFA11P Gene

Function for DEFA11P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEFA11P Gene

Localization for DEFA11P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFA11P Gene

Pathways & Interactions for DEFA11P Gene

SuperPathways for DEFA11P Gene

No Data Available

Interacting Proteins for DEFA11P Gene

Gene Ontology (GO) - Biological Process for DEFA11P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DEFA11P Gene

Drugs & Compounds for DEFA11P Gene

No Compound Related Data Available

Transcripts for DEFA11P Gene

mRNA/cDNA for DEFA11P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFA11P Gene

No ASD Table

Relevant External Links for DEFA11P Gene

GeneLoc Exon Structure for
DEFA11P
ECgene alternative splicing isoforms for
DEFA11P

Expression for DEFA11P Gene

mRNA expression in normal human tissues for DEFA11P Gene

SOURCE GeneReport for Unigene cluster for DEFA11P Gene Hs.690600

genes like me logo Genes that share expression patterns with DEFA11P: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , mRNA Expression by UniProt/SwissProt and Protein tissue co-expression partners for DEFA11P Gene

Orthologs for DEFA11P Gene

Evolution for DEFA11P Gene

ENSEMBL:
Gene Tree for DEFA11P (if available)
TreeFam:
Gene Tree for DEFA11P (if available)

No data available for Orthologs for DEFA11P Gene

Paralogs for DEFA11P Gene

No data available for Paralogs for DEFA11P Gene

Variants for DEFA11P Gene

Sequence variations from dbSNP and Humsavar for DEFA11P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs7820625 -- 7,028,389(+) GCCAA(A/T)GTTTG downstream-variant-500B
rs11137086 -- 7,029,541(+) AGTGA(G/T)AAGCC upstream-variant-2KB
rs55851618 -- 7,030,612(+) TGTGA(C/T)GACAA upstream-variant-2KB
rs35468872 -- 7,029,225(+) GATCA(-/C)CTAAG intron-variant
rs62487515 -- 7,030,369(+) AGAGG(C/T)AACTA upstream-variant-2KB

Relevant External Links for DEFA11P Gene

HapMap Linkage Disequilibrium report
DEFA11P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DEFA11P Gene

Disorders for DEFA11P Gene

Relevant External Links for DEFA11P

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DEFA11P

No disorders were found for DEFA11P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DEFA11P Gene

Publications for DEFA11P Gene

  1. Polymorphic segmental duplications at 8p23.1 challenge the determination of individual defensin gene repertoires and the assembly of a contiguous human reference sequence. (PMID: 15588320) Taudien S. … Platzer M. (BMC Genomics 2004) 2 3 67
  2. Rapid evolution and diversification of mammalian alpha-defensins as revealed by comparative analysis of rodent and primate genes. (PMID: 15494476) Patil A. … Zhang G. (Physiol. Genomics 2004) 2 3

Products for DEFA11P Gene

Sources for DEFA11P Gene

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