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Aliases for DEFA10P Gene

Aliases for DEFA10P Gene

  • Defensin Alpha 10, Pseudogene 2 3 5
  • Defensin, Alpha 10 Pseudogene 2

External Ids for DEFA10P Gene

Previous GeneCards Identifiers for DEFA10P Gene

  • GC08U900508
  • GC08M006813
  • GC08M006605
  • GC08M006825

Summaries for DEFA10P Gene

GeneCards Summary for DEFA10P Gene

DEFA10P (Defensin Alpha 10, Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFA10P Gene

Genomics for DEFA10P Gene

Genomic Location for DEFA10P Gene

Chromosome:
8
Start:
6,968,141 bp from pter
End:
6,969,113 bp from pter
Size:
973 bases
Orientation:
Minus strand

Genomic View for DEFA10P Gene

Genes around DEFA10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DEFA10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DEFA10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFA10P Gene

No data available for Regulatory Elements for DEFA10P Gene

Proteins for DEFA10P Gene

Post-translational modifications for DEFA10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFA10P Gene

Domains & Families for DEFA10P Gene

Gene Families for DEFA10P Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DEFA10P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DEFA10P Gene

Function for DEFA10P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DEFA10P Gene

Localization for DEFA10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFA10P Gene

Pathways & Interactions for DEFA10P Gene

SuperPathways for DEFA10P Gene

No Data Available

Interacting Proteins for DEFA10P Gene

Gene Ontology (GO) - Biological Process for DEFA10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DEFA10P Gene

Drugs & Compounds for DEFA10P Gene

No Compound Related Data Available

Transcripts for DEFA10P Gene

mRNA/cDNA for DEFA10P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFA10P Gene

No ASD Table

Relevant External Links for DEFA10P Gene

GeneLoc Exon Structure for
DEFA10P
ECgene alternative splicing isoforms for
DEFA10P

Expression for DEFA10P Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DEFA10P Gene

NURSA nuclear receptor signaling pathways regulating expression of DEFA10P Gene:

DEFA10P

SOURCE GeneReport for Unigene cluster for DEFA10P Gene:

Hs.552564
genes like me logo Genes that share expression patterns with DEFA10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DEFA10P Gene

Orthologs for DEFA10P Gene

Evolution for DEFA10P Gene

ENSEMBL:
Gene Tree for DEFA10P (if available)
TreeFam:
Gene Tree for DEFA10P (if available)

No data available for Orthologs for DEFA10P Gene

Paralogs for DEFA10P Gene

No data available for Paralogs for DEFA10P Gene

Variants for DEFA10P Gene

Sequence variations from dbSNP and Humsavar for DEFA10P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs1000279362 -- 6,968,640(+) ACAGG(A/C)ATATC intron-variant
rs1000876443 -- 6,969,583(+) GAAGA(A/G)TCATT upstream-variant-2KB
rs1001327015 -- 6,969,735(+) TACAT(C/T)CAAAA upstream-variant-2KB
rs1001545462 -- 6,967,888(+) GAAGC(C/G)AAAAC downstream-variant-500B
rs1001599143 -- 6,968,033(+) TAAGG(C/T)ATTTA downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for DEFA10P Gene

Variant ID Type Subtype PubMed ID
dgv11907n54 CNV loss 21841781
dgv6878n100 CNV gain 25217958
dgv6879n100 CNV gain 25217958
dgv6880n100 CNV loss 25217958
esv21544 CNV gain+loss 19812545
esv2752262 CNV gain 17911159
esv2759589 CNV gain+loss 17122850
esv2764122 CNV loss 21179565
esv32907 CNV gain 17666407
esv3572488 CNV loss 25503493
esv3576520 CNV gain 25503493
nsv1015244 CNV gain 25217958
nsv1031577 CNV gain 25217958
nsv1151676 CNV deletion 26484159
nsv21 CNV deletion 15895083
nsv428194 CNV gain+loss 18775914
nsv465436 CNV gain 19166990
nsv465437 CNV gain 19166990
nsv509248 CNV insertion 20534489
nsv524367 CNV loss 19592680
nsv525411 CNV gain 19592680
nsv527917 CNV gain 19592680
nsv528374 CNV gain 19592680
nsv6060 CNV deletion 18451855
nsv6061 CNV insertion 18451855
nsv610006 CNV gain 21841781
nsv610007 CNV gain 21841781
nsv610010 CNV gain 21841781
nsv820476 CNV duplication 20802225
nsv824518 CNV loss 20364138
nsv8276 CNV gain 18304495
nsv8277 CNV loss 18304495
nsv831221 CNV gain 17160897
nsv971275 CNV duplication 23825009

Relevant External Links for DEFA10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DEFA10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DEFA10P Gene

Disorders for DEFA10P Gene

Relevant External Links for DEFA10P

Genetic Association Database (GAD)
DEFA10P
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DEFA10P

No disorders were found for DEFA10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DEFA10P Gene

Publications for DEFA10P Gene

  1. Rapid evolution and diversification of mammalian alpha-defensins as revealed by comparative analysis of rodent and primate genes. (PMID: 15494476) Patil A. … Zhang G. (Physiol. Genomics 2004) 2 3 64
  2. Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis. (PMID: 21151130) Painter J.N. … Zondervan K.T. (Nat. Genet. 2011) 46 64

Products for DEFA10P Gene

Sources for DEFA10P Gene

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