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Aliases for DEFA10P Gene

Aliases for DEFA10P Gene

  • Defensin, Alpha 10 Pseudogene 2 3

External Ids for DEFA10P Gene

Previous GeneCards Identifiers for DEFA10P Gene

  • GC08U900508
  • GC08M006813
  • GC08M006605
  • GC08M006825

Summaries for DEFA10P Gene

GeneCards Summary for DEFA10P Gene

DEFA10P (Defensin, Alpha 10 Pseudogene) is a Pseudogene.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DEFA10P Gene

Genomics for DEFA10P Gene

Genomic Location for DEFA10P Gene

Start:
6,968,141 bp from pter
End:
6,969,113 bp from pter
Size:
973 bases
Orientation:
Minus strand

Genomic View for DEFA10P Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DEFA10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DEFA10P Gene

No data available for Regulatory Elements for DEFA10P Gene

Proteins for DEFA10P Gene

Post-translational modifications for DEFA10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for DEFA10P Gene

Domains for DEFA10P Gene

Gene Families for DEFA10P Gene

HGNC:
  • DEFA :Defensins, alpha

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DEFA10P: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DEFA10P Gene

Function for DEFA10P Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DEFA10P Gene

Localization for DEFA10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DEFA10P Gene

Pathways for DEFA10P Gene

SuperPathways for DEFA10P Gene

No Data Available

Interacting Proteins for DEFA10P Gene

Gene Ontology (GO) - Biological Process for DEFA10P Gene

None

No data available for Pathways by source for DEFA10P Gene

Transcripts for DEFA10P Gene

mRNA/cDNA for DEFA10P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DEFA10P Gene

No ASD Table

Relevant External Links for DEFA10P Gene

GeneLoc Exon Structure for
DEFA10P
ECgene alternative splicing isoforms for
DEFA10P

Expression for DEFA10P Gene

mRNA expression in normal human tissues for DEFA10P Gene

SOURCE GeneReport for Unigene cluster for DEFA10P Gene Hs.552564

genes like me logo Genes that share expressions with DEFA10P: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein expression and mRNA Expression by UniProt/SwissProt for DEFA10P Gene

Orthologs for DEFA10P Gene

Evolution for DEFA10P Gene

ENSEMBL:
Gene Tree for DEFA10P (if available)
TreeFam:
Gene Tree for DEFA10P (if available)

No data available for Orthologs for DEFA10P Gene

Paralogs for DEFA10P Gene

No data available for Paralogs for DEFA10P Gene

Variants for DEFA10P Gene

Sequence variations from dbSNP and Humsavar for DEFA10P Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type MAF
rs2615764 -- 6,970,593(+) AAACA(G/T)GAGGG upstream-variant-2KB
rs2615765 -- 6,970,909(+) CATAT(C/T)ACAGG upstream-variant-2KB
rs2615766 -- 6,971,087(+) CACGT(C/G/T)GGCTT upstream-variant-2KB
rs2702875 -- 6,968,722(-) CAGCC(A/G)TTATT intron-variant
rs2738130 -- 6,970,594(-) CCCCT(A/C)CTGTT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DEFA10P Gene

Variant ID Type Subtype PubMed ID
nsv465436 CNV Gain 19166990
esv2752262 CNV Gain 17911159
nsv465437 CNV Gain 19166990
dgv7656n71 CNV Gain 21882294
dgv7657n71 CNV Gain 21882294
nsv428194 CNV Gain+Loss 18775914
nsv528374 CNV Gain 19592680
dgv2190e1 CNV Complex 17122850
essv14510 CNV CNV 17122850
dgv2191e1 CNV Complex 17122850
nsv831221 CNV Gain 17160897
nsv509248 CNV Insertion 20534489
nsv524367 CNV Loss 19592680
nsv890068 CNV Gain 21882294
essv18512 CNV CNV 17122850
nsv6060 CNV Loss 18451855
nsv21 CNV Loss 15895083
nsv6061 CNV Insertion 18451855
nsv890069 CNV Gain 21882294
nsv527917 CNV Gain 19592680
nsv525411 CNV Gain 19592680
nsv8276 CNV Gain 18304495
nsv824518 CNV Loss 20364138
esv32907 CNV Gain 17666407
esv21544 CNV Gain+Loss 19812545
nsv820476 CNV Duplication 20802225
nsv8277 CNV Loss 18304495

Relevant External Links for DEFA10P Gene

HapMap Linkage Disequilibrium report
DEFA10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DEFA10P Gene

Disorders for DEFA10P Gene

Relevant External Links for DEFA10P

Genetic Association Database (GAD)
DEFA10P
genes like me logo Genes that share disorders with DEFA10P: view

No data available for UniProtKB/Swiss-Prot for DEFA10P Gene

Publications for DEFA10P Gene

  1. Rapid evolution and diversification of mammalian alpha-defensins as revealed by comparative analysis of rodent and primate genes. (PMID: 15494476) Patil A. … Zhang G. (Physiol. Genomics 2004) 2 3
  2. Genome-wide association study identifies a locus at 7p15.2 associated with endometriosis. (PMID: 21151130) Painter J.N. … Zondervan K.T. (Nat. Genet. 2011) 48

Products for DEFA10P Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate DEFA10P
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for DEFA10P
    • Block miRNA regulation of DEFA10P using miScript Target Protectors

    Sources for DEFA10P Gene

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