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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DEC1 Gene

protein-coding   GIFtS: 45
GCID: GC09P117904

Deleted In Esophageal Cancer 1

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
Deleted In Esophageal Cancer 11 2
Candidate Tumor Suppressor CTS92 3
CTS92 3

External Ids:    HGNC: 236581   Entrez Gene: 505142   Ensembl: ENSG000001730777   OMIM: 6047675   UniProtKB: Q9P2X73   

Export aliases for DEC1 gene to outside databases

Previous GC identifers: GC09P108702 GC09P109636 GC09P111357 GC09P113280 GC09P114983 GC09P116943 GC09P087508


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for DEC1 Gene:
The function of this gene is not known. This gene is located in a region commonly deleted in esophageal squamous
cell carcinomas. Gene expression is reduced or absent in these carcinomas and thus this is a candidate tumor
suppressor gene for esophageal squamous cell carcinomas. (provided by RefSeq, Jul 2008)

GeneCards Summary for DEC1 Gene: 
DEC1 (deleted in esophageal cancer 1) is a protein-coding gene. Diseases associated with DEC1 include esophagitis, and esophageal squamous cell carcinoma.

UniProtKB/Swiss-Prot: DEC1_HUMAN, Q9P2X7
Function: Candidate tumor suppressor

Gene Wiki entry for DEC1 Gene


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000009.11  NC_018920.2  NT_008470.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DEC1 gene promoter:
         c-Fos   Pbx1a   Sp1   AP-1   ATF-2   STAT3   c-Jun   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for DEC1

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DEC1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 9q32   Ensembl cytogenetic band:  9q33.1   HGNC cytogenetic band: 9q32

DEC1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DEC1 gene location

GeneLoc information about chromosome 9         GeneLoc Exon Structure

GeneLoc location for GC09P117904:  view genomic region     (about GC identifiers)

Start:
117,904,097 bp from pter      End:
118,164,923 bp from pter
Size:
260,827 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: DEC1_HUMAN, Q9P2X7 (See protein sequence)
Recommended Name: Deleted in esophageal cancer 1  
Size: 70 amino acids; 7542 Da

Explore the universe of human proteins at neXtProt for DEC1: NX_Q9P2X7

Explore proteomics data for DEC1 at MOPED 

DEC1 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

DEC1 Protein Expression

REFSEQ proteins: NP_059114.1  
ENSEMBL proteins: 
 ENSP00000363128  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

ProtoNet protein and cluster: Q9P2X7


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
About This Section

Molecular Function:

     UniProtKB/Swiss-Prot Summary: DEC1_HUMAN, Q9P2X7
Function: Candidate tumor suppressor

Phenotypes:
     1 GenomeRNAi human phenotype for DEC1:

 Increased 8N DNA content 

Animal Models:
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(Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
About This Section

SuperPaths for DEC1 About                                                                                                See pathways by source

SuperPathContained pathways About
1Circadian rhythm pathway
Circadian rhythm pathway


1 BioSystems Pathway for DEC1
    Circadian rhythm pathway


Interactions:

    SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for DEC1

STRING Interaction Network Preview (showing 2 interactants - click image to see more details)

2 Interacting proteins for DEC1 (Q9P2X73 ENSP000003631284) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
HDAC1Q135473, ENSP000003626494I2D: score=1 STRING: ENSP00000362649
HDAC2Q927693, ENSP000003813314I2D: score=1 STRING: ENSP00000381331
About this table

Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0008285negative regulation of cell proliferation TAS10612805

DEC1 for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
About This Section
Browse Small Molecules at EMD Millipore
Browse drugs & compounds from Enzo Life Sciences

Browse Tocris compounds for DEC1

Search CenterWatch for drugs/clinical trials and news about DEC1

(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from EMD Millipore,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
About This Section

REFSEQ mRNAs for DEC1 gene: 
NM_017418.2  

Unigene Cluster for DEC1:

Deleted in esophageal cancer 1
Hs.148841  [show with all ESTs]
Unigene Representative Sequence: AK056153
3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000374016(uc004bjk.1 uc004bjl.1) ENST00000477580 ENST00000484171

miRNA
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Browse SwitchGear 3'UTR luciferase reporter plasmids
Inhib. RNA
Products:
     
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Clone
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Primer
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  QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DEC1

Additional mRNA sequence: 

AB022761.1 AK056153.1 BC030567.1 BC107103.1 

4 DOTS entries:

DT.97812535  DT.121165088  DT.436858  DT.95353682 

14 AceView cDNA sequences:

BX116042 BM452178 R13987 AB022761 NM_017418 AI365209 AK056153 AI989497 
CA436809 BC030567 BV197968 H09707 BQ575832 R40050 

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for DEC1    About this scheme

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b
SP1:                              
SP2:        -                     


ECgene alternative splicing isoforms for DEC1

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section

DEC1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AACCTTACCC
DEC1 Expression
About this image


See DEC1 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for DEC1

SOURCE GeneReport for Unigene cluster: Hs.148841

UniProtKB/Swiss-Prot: DEC1_HUMAN, Q9P2X7
Tissue specificity: Expressed in many tissues, with highest expression in prostate and testis. Reduced expression
in esophageal carcinomas

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QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DEC1
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DEC1

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
About This Section

This gene was present in the common ancestor of human and chimp.

Orthologs for DEC1 gene from 1 species (see representative species )    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chimpanzee
(Pan troglodytes)
Mammalia DEC16
--
97(a)
1 ↔ 1
9(114329582-114355266)


ENSEMBL Gene Tree for DEC1 (if available)
TreeFam Gene Tree for DEC1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
  --

(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section

10/5538 SNPs in DEC1 are shown (see all 5538)    About this table     
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 9 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs132966741,2
F--87771508(+) tttccG/Actttt 1 -- ds50011Minor allele frequency- A:0.50NA 2
rs1867963111,2
C--87771517(+) TTGCAA/C/TCCTCT 1 -- ds50010--------
rs677789231,2
C--117907511(+) TTTTT-/T/TT  
        
CCTCC
1 -- int10--------
rs59001261,2
C--117907521(+) TTTTT-/T/TT  
        
CCTCC
1 -- int1 trp31NA 2
rs573413751,2
C--117910994(+) GCATC-/AATGCA 1 -- int10--------
rs1829269601,2
--117914505(+) TAAATA/GTTTAT 1 -- us2k10--------
rs1856836741,2
--117914591(+) ATGTTA/GTTATA 1 -- us2k10--------
rs1904916851,2
--117914649(+) AATGTC/TCTGTA 1 -- us2k10--------
rs15914201,2
C,F,H--117914677(-) AAATTG/CGGTTT 1 -- us2k119Minor allele frequency- C:0.04NS EA NA 2532
rs1826829931,2
--117914679(+) ACCCAA/GTTTCT 1 -- us2k10--------

HapMap Linkage Disequilibrium report for DEC1 (117904097 - 118154097 bp, first 250kb of DEC1)

Structural Variations
     Database of Genomic Variants (DGV) 10/24 variations for DEC1 (see all 24):    About this table     
Variant IDTypeSubtypePubMed ID
esv2677881CNV Deletion23128226
esv3290CNV Deletion18987735
esv2494923CNV Deletion19546169
esv2176591CNV Deletion18987734
esv2738969CNV Deletion23290073
esv2738968CNV Deletion23290073
esv1089105CNV Deletion17803354
esv2068341CNV Deletion18987734
esv2674932CNV Deletion23128226
esv273535CNV Insertion20981092


Human Gene Mutation Database (HGMD): DEC1
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
About This Section
OMIM gene information: 604767   
OMIM disorders: 133239  
11 diseases for DEC1:    About MalaCards
esophagitis    esophageal squamous cell carcinoma    esophageal cancer    squamous cell carcinoma
squamous cell carcinoma of the head and neck    oral cancer    anemia    hypoxia
gastric cancer    colorectal cancer    prostatitis


DEC1 for disorders           About GeneDecksing

Genetic Association Database (GAD): DEC1
Human Genome Epidemiology (HuGE) Navigator: DEC1 (10 documents)

Export disorders for DEC1 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
About This Section

PubMed articles for DEC1 gene, integrated from 9 sources (see all 27):
(articles sorted by number of sources associating them with DEC1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Isolation and mutational analysis of a novel human cDNA, DEC1 (deleted in esophageal cancer 1), derived from the tumor-suppressor locus on chromosome 9q32. (PubMed id 10612805)1, 2, 3, 9 Nishiwaki T.... Nakamura Y. (2000)
  2. A novel functional DEC1 promoter polymorphism -249T&g t;C reduces risk of squamous cell carcinoma of the head and neck. (PubMed id 20935061)1, 4 Huang Y.J....Wei Q. (2010)
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1, 4 Rose J.E....Uhl G.R. (2010)
  4. Genetic associations of 115 polymorphisms with cancers of the upper aerodigestive tract across 10 European countries: the ARCAGE project. (PubMed id 19339270)1, 4 Canova C....Brennan P. (2009)
  5. DNA sequence and analysis of human chromosome 9. (PubMed id 15164053)1, 2 Humphray S.J.... Dunham I. (2004)
  6. Detailed deletion mapping in squamous cell carcinomas of the esophagus narrows a region containing a putative tumor suppressor gene to about 200 kilobases on distal chromosome 9q. (PubMed id 8603412)1, 3 Miura K....Nakamura Y. (1996)
  7. The transcription factor DEC1 (BHLHE40/STRA13/SHARP-2) is negatively associated with TNM stage in non-small-cell lung cancer and inhib its the proliferation through cyclin D1 in A549 and BE1 cells. (PubMed id 23423709)1 Liu Y....Wang E.H. (2013)
  8. Overexpression of the DEC1 protein induces senescence in vitro and is related to better survival in esophageal squamous cell carcinoma . (PubMed id 22844531)1 Xu Q....Lu N. (2012)
  9. The increased expression of DEC1 gene is related to HI F-1a protein in gastric cancer cell lines. (PubMed id 21779800)1 Zheng Y....Wang Y. (2012)
  10. Genome-wide association study of survival in patients with pancreatic adenocarcinoma. (PubMed id 23180869)1 Wu C....Wolpin B.M. (2012)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section
 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
About This Section
Entrez Gene: 50514 HGNC: 23658 AceView: DEC1 Ensembl:ENSG00000173077 euGenes: HUgn50514
ECgene: DEC1 H-InvDB: DEC1

(According to HUGE)
About This Section
  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
NameDescription
PharmGKB entry for DEC1 Pharmacogenomics, SNPs, Pathways
ATLAS Chromosomes in Cancer entry for DEC1 Genetics and Cytogenetics in Oncology and Haematology

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
About This Section
Patent Information for DEC1 gene:
Search GeneIP for patents involving DEC1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
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About This Section

 
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GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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transforming growth factor, beta 1
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