DDX6 Gene
protein-coding GIFtS: 63
GC11M118125
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DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 (Previous names: DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54kD) ) Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database (Previous symbol: HLR2)
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Aliases & Descriptions for DDX6
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| EC 3.6.1.- 3 | | FLJ36338 2 | | HLR2 2, 3, 5 | | P54 2 | | RCK 1, 2, 3 |
| | | Descriptions |
|---|
| ATP-dependent RNA helicase p54 3 | | DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 2 | | DEAD box protein 6 3 | | DEAD box-6 2 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 6 (RNA helicase, 54kD) 1, 2 | | Oncogene RCK 3 |
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| | Search outside databases for aliases for DDX6 genePrevious GC identifers: GC11M120959 GC11M120132 GC11M118654 GC11M118160 GC11M118162 |
Summaries for DDX6(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for DDX6: This gene encodes a member of the DEAD box protein family. The protein is an RNA helicase found in P-bodies and stress granules, and functions in translation suppression and mRNA degradation. It is required for microRNA-induced gene silencing. [provided by RefSeq] UniProtKB/Swiss-Prot: DDX6_HUMAN, P26196Function: In the process of mRNA degradation, may play a role in mRNA decappingGene Wiki entry for DDX6 |
Genomic Location for DDX6
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the DDX6 gene 
Entrez Gene cytogenetic band: 11q23.3 Ensembl cytogenetic band: 11q23.3 HGNC cytogenetic band: 11q23.3DDX6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure GeneLoc location for GC11M118125:
(about GC identifiers)
Start:
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118,125,623 bp from pter |
End:
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118,167,082 bp from pter |
Size:
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41,460 bases |
Orientation:
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minus strand |
RefSeq DNA sequence:- NC_000011.8 NT_033899.7
| Proteins for DDX6
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: DDX6_HUMAN, P26196 (See
protein sequence)Recommended Name: Probable ATP-dependent RNA helicase DDX6 Size: 483 amino acids; 54417 Da
Subunit: Forms a complex with DCP1A, DCP2, EDC3 and EDC4/HEDLS
Subcellular location: Cytoplasm, P-body. Note=Processing bodies (PB)
PDB structures from and Proteopedia :1VEC (3D)
 2WAX (3D)
 2WAY (3D)
 
Secondary accessions: Q5D048Post-translational modifications:
Phosphorylated upon DNA damage, probably by ATM or ATR1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004388.2
ENSEMBL proteins: ENSP00000264018
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DDX6 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for DDX6: Assays for DDX6: | Protein
Domains/ Families for DDX6(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P26196
ProtoNet protein and cluster: P26196 1 Blocks protein family: IPB000629 ATP-dependent helicase
UniProtKB/Swiss-Prot: DDX6_HUMAN, P26196Similarity: Belongs to the DEAD box helicase family. DDX6/DHH1 subfamilySimilarity: Contains 1 helicase ATP-binding domainSimilarity: Contains 1 helicase C-terminal domain | Gene Function for DDX6
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004397
Applied Biosystems Silencer® siRNAs for DDX6
Sigma-Aldrich siRNA for DDX6  Sigma-Aldrich shRNA Panels and shRNA for DDX6  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004397                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004397                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004397 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004397
UniProtKB/Swiss-Prot: DDX6_HUMAN, P26196Function: In the process of mRNA degradation, may play a role in mRNA decappingEnzyme Number (IUBMB): EC 3.6.1.- Genatlas biochemistry entry for DDX6:DEAD/H box protein 6,proliferation associated nuclear antigen p68,with homology to Drosophila oocyte specific helicase ME31,overexpressed in colorectal adenocarcinomas5/7 Gene Ontology (GO) molecular function terms (links to tree view) (see all 7
): About this table | Pathways & Interactions for DDX6
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 2 Sigma-Aldrich "Your Favorite Gene" Pathways for DDX6 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for DDX6 
5/10 Interacting proteins for DDX6 (P261961 ENSP000002640183) via UniProtKB, MINT, and/or STRING (see all 10
)About this table
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Drugs & Compounds for DDX6(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
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Browse Tocris compounds for DDX6
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Transcripts for DDX6(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004397
Sigma-Aldrich siRNA for DDX6  Sigma-Aldrich shRNA Panels and shRNA for DDX6  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004397 REFSEQ mRNAs for DDX6 gene: NM_004397.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004397               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004397                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004397                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004397  Additional cDNA sequence: AK093657.1 AK313244.1 BC026228.1 BC039826.1 BC065007.1 D17532.1 Z11685.1 12 DOTS entries: DT.308523 DT.114770 DT.120746679 DT.99982967 DT.440336 DT.100745112 DT.95271131 DT.95357307 DT.91696854 DT.100810839 DT.40268466 DT.91838654 24/181 AceView cDNA sequences (see all 181
):W48640 W03083 AI539409 AU118867 BM696691 BM728565 BM720697 BQ707967 BM716423 BQ017952 BM972001 BM013673 BQ438803 CA423151 CD000872 BP362051 AA865492 BE218820 W51956 BP355911 BG259835 AW149702 AI566453 Z11685
highest scoring ESTs for DDX6:D17532 AL697132 BC026228 BE242871 BG546189 BI601100 BM012472 BM905603 CF137516 AA523483 Unigene Cluster for DDX6: DEAD (Asp-Glu-Ala-Asp) box polypeptide 6 Hs.654366 [show with all ESTs]Unigene Representative Sequence: NM_004397
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for DDX6 (see all 7
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| ExUns: | 1 | ^ | 2a | · | 2b | ^ | 3a | · | 3b | · | 3c | ^ | 4a | · | 4b | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7a | · | 7b | · | 7c | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | |
| SP1: | |   | |   | |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | - |   | - |   | - |   | - |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | |   | - |   | - |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | |   | |   | |   | - |   | |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for DDX6
1 Ensembl transcript including schematic representation: ENST00000264018
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Expression for DDX6
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| DDX6 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for DDX6
1 / 2 / 3 8 probe-sets matching DDX6 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: AGGTCAGAGG
SOURCE GeneReport for Unigene cluster: Hs.654366
Expression variation in blood from EXPOLDB for DDX6 UniProtKB/Swiss-Prot: DDX6_HUMAN, P26196Tissue specificity: Abundantly expressed in most tissues |
Orthologs for DDX6
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
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Orthologs for DDX6 gene from 5/28 species (see all 28
)
About this table Species with no ortholog for DDX6
ENSEMBL Gene Tree for DDX6 | Paralogs for DDX6(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Pseudogenes
- 1 related pseudogene
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SNPs/Variants for DDX6(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
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HapMap Linkage Disequilibrium images for DDX6 (up to first 250kb)
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Disorders & Mutations for DDX6
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 600326
UniProtKB/Swiss-Prot: DDX6_HUMAN, P26196
A chromosomal aberration involving DDX6 may be a cause of hematopoietic tumors such as B-cell lymphomas. Translocation t(11;14)(q23;q32)1 Novoseek disease relationship for DDX6 gene
About this table
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Medical News for DDX6(Possibly Related Articles in
Doctor's Guide)
About This Section
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Publications for DDX6 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/30 PubMed articles for DDX6 gene (see all 30
):- Cloning, expression and localization of an RNA helicase gene from a human lymphoid cell line with chromosomal breakpoint 11q23.3. (PubMed id 1579499)2, 3, 4 Lu D. and Yunis J.J. (1992)
- Crystallization and X-ray analysis of the N-terminal core domain of a tumour-associated human DEAD-box RNA helicase, rck/p54. (PubMed id 14684915)1, 3, 4 Matsui T....Tanaka N. (2004)
- Multiple processing body factors and the ARE binding protein TTP activate mRNA decapping. (PubMed id 16364915)3, 4 Fenger-Groen M.... Lykke-Andersen J. (2005)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- The RCK gene associated with t(11;14) translocation is distinct from the MLL/ALL-1 gene with t(4;11) and t(11;19) translocations. (PubMed id 1394235)3, 4 Akao Y.... Ueda R. (1992)
- The rck/p54 candidate proto-oncogene product is a 54-kilodalton D-E-A-D box protein differentially expressed in human and mouse tissues. (PubMed id 7614484)1, 3 Akao Y....Tsujimoto Y. (1995)
- RNA helicase p54 (DDX6) is a shuttling protein involved in nuclear assembly of stored mRNP particles. (PubMed id 11839790)1, 3 Smillie D.A. and Sommerville J. (2002)
- Overexpression of a DEAD box/RNA helicase protein, rck/p54, in human hepatocytes from patients with hepatitis C virus-related chronic hepatitis and its implication in hepatocellular carcinogenesis. (PubMed id 12823589)1, 3 Miyaji K....Akao Y. (2003)
- Overexpression of rck/p54, a DEAD box protein, in human colorectal tumours. (PubMed id 10360675)1, 3 Nakagawa Y....Akao Y. (1999)
- Structural basis for the mutually exclusive anchoring of P body components EDC3 and Tral to the DEAD box protein DDX6/Me31B. (PubMed id 19285948)3 Tritschler F....Weichenrieder O. (2009)
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Search for DDX6
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
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Genome Databases showing DDX6
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing DDX6
(According to HUGE)
About This Section
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Specialized Databases showing DDX6(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
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| About This Section
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| Services for DDX6(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
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 Products for DDX6:

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Incremental update: 13 Oct 2009
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