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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DDX51 Gene

protein-coding   GIFtS: 49
GCID: GC12M132621

DEAD (Asp-Glu-Ala-Asp) box polypeptide 51

 Explore 1 disease affiliated with
DDX51 via our new
 Human Malady Compendium 
Biological research products
for DDX51
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 511 2
DEAD Box Protein 512 3
ATP-Dependent RNA Helicase DDX512
EC 3.6.4.133
EC 3.6.18

External Ids:    HGNC: 200821   Entrez Gene: 3177812   Ensembl: ENSG000001851637   UniProtKB: Q8N8A63   

Export aliases for DDX51 gene to outside databases

Previous GC identifers: GC12M132503 GC12M131117 GC12M131289 GC12M129506


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: DDX51_HUMAN, Q8N8A6
Function: ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000012.11  NC_018923.1  NT_009755.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DDX51 gene promoter:
         AML1a   Brachyury   YY1   GATA-1   HEN1   PPAR-alpha   PPAR-gamma1   Ik-2   PPAR-gamma2   Pax-4a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for DDX51

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DDX51


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12q24.33   Ensembl cytogenetic band:  12q24.33   HGNC cytogenetic band: 12q24.33

DDX51 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DDX51 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M132621:  view genomic region     (about GC identifiers)

Start:
132,621,139 bp from pter      End:
132,628,880 bp from pter
Size:
7,742 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: DDX51_HUMAN, Q8N8A6 (See protein sequence)
Recommended Name: ATP-dependent RNA helicase DDX51  
Size: 666 amino acids; 72457 Da
Subcellular location: Nucleus, nucleolus (By similarity)
Secondary accessions: A8MPT9 Q5CZ71 Q8IXK5 Q96ED1

Explore the universe of human proteins at neXtProt for DDX51: NX_Q8N8A6

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q8N8A6

  • 4/9 DME Specific Peptides for DDX51 (Q8N8A6) (see all 9)
     RVGRTAR  VATPGRL  IVVATPGR  DEADRMID 

    DDX51 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_778236.2  
    ENSEMBL proteins: 
     ENSP00000380495  

    Human Recombinant Protein Products: 
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    Browse ProSpec Recombinant Proteins
    Uscn Proteins for DDX51

    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005730nucleolus IEA--


    DDX51 for ontologies           About GeneDecksing



    DDX51 Antibody Products: 
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    Uscn ELISAs and CLIAs for DDX51


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    DDX51 for domains           About GeneDecksing

    4 InterPro domains/families:
     IPR011545 DNA/RNA_helicase_DEAD/DEAH_N
     IPR000629 RNA-helicase_DEAD-box_CS
     IPR014001 Helicase_ATP-bd
     IPR001650 Helicase_C

    Graphical View of Domain Structure for InterPro Entry Q8N8A6

    ProtoNet protein and cluster: Q8N8A6

    1 Blocks protein family: IPB000629 ATP-dependent helicase

    UniProtKB/Swiss-Prot: DDX51_HUMAN, Q8N8A6
    Domain: The Q motif is unique to and characteristic of the DEAD box family of RNA helicases and controls ATP binding
    and hydrolysis
    Similarity: Belongs to the DEAD box helicase family. DDX51/DBP6 subfamily
    Similarity: Contains 1 helicase ATP-binding domain
    Similarity: Contains 1 helicase C-terminal domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: DDX51_HUMAN, Q8N8A6
    Function: ATP-binding RNA helicase involved in the biogenesis of 60S ribosomal subunits (By similarity)
    Catalytic activity: ATP + H(2)O = ADP + phosphate

    Enzyme Numbers (IUBMB): EC 3.6.12 EC 3.6.4.131

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    SwitchGear 3'UTR luciferase reporter plasmidDDX51 3' UTR sequence
    Inhib. RNA
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    OriGene shRNA RFP: DDX51
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DDX51

    Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003723RNA binding IEA--
    GO:0005524ATP binding IEA--
    GO:0008026ATP-dependent helicase activity IEA--


    DDX51 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for DDX51:
     Decreased Wnt reporter activit  Decreased viability 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DDX51

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    5/47 Interacting proteins for DDX51 (Q8N8A63 ENSP000003804954) via UniProtKB, MINT, STRING, and/or I2D (see all 47)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    HIST1H4AP628053I2D: score=1 
    HIST1H4BP628053I2D: score=1 
    HIST1H4CP628053I2D: score=1 
    HIST1H4DP628053I2D: score=1 
    HIST1H4EP628053I2D: score=1 
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006364rRNA processing IEA--


    DDX51 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DDX51
    Search CenterWatch for drugs/clinical trials and news about DDX51 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for DDX51 gene: 
    NM_175066.3  

    Unigene Cluster for DDX51:

    DEAD (Asp-Glu-Ala-Asp) box polypeptide 51
    Hs.445168  [show with all ESTs]
    Unigene Representative Sequence: NM_175066
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000397333(uc001ujy.4) ENST00000462829 ENST00000541489 ENST00000329073
    ENST00000545991 ENST00000546058

    miRNA
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    Inhib. RNA
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    OriGene shRNA RFP: DDX51
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    Additional cDNA sequence: 

    AB593157.1 AK097078.1 BC012461.2 BC029279.1 BC040185.2 BC063603.1 CR936870.1 

    9 DOTS entries:

    DT.217379  DT.95161270  DT.65285830  DT.92424969  DT.106779  DT.92424968  DT.101968309  DT.91987047 
    DT.99935909 

    24/113 AceView cDNA sequences (see all 113):

    AI383509 CF134951 AA808631 AW664182 BM786490 CK430932 BC029279 AI245102 
    CK430701 BM808782 AA157876 BX115040 AA157438 BF684837 BC012461 AA972948 
    BM826115 BU543659 AI934630 AI951143 CD370946 BM557347 BC063603 AA905768 

    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for DDX51    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c · 7d ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14
    SP1:                                                              -           -                                       
    SP2:                                                                                                                  
    SP3:                                                                                                                  
    SP4:                                                                                                                  
    SP5:                                                                          -                                       


    ECgene alternative splicing isoforms for DDX51

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DDX51 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GACTGGGTGG

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    DDX51 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    HeartAtrioventricular CanalAtrioventricular Canal CellsMyocardium
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See DDX51 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DDX51

    SOURCE GeneReport for Unigene cluster: Hs.445168
        SABiosciences Custom PCR Arrays for DDX51
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DDX51

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for DDX51 gene from 8/33 species (see all 33)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves DDX511 DEAD (Asp-Glu-Ala-Asp) box polypeptide 51 61.55(n)
    60.83(a)
      416936  XM_415229.2  XP_415229.2 
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.138402 Xenopus laevis transcribed sequence with weak similarity more 72.11(n)    BJ076671.1 
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.43682 Transcribed sequence with strong similarity to protein more 70.22(n)    AI878720.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Dbp73D1 Dead box protein 73D 48.18(n)
    43.79(a)
      39871  NM_057485.3  NP_476833.1 
    worm
    (Caenorhabditis elegans)
    Secernentea ZK686.26
    Putative ATP-dependent RNA helicase ZK686.2
    17(a)
    1 ↔ 1
    III(7763634-7765987)
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes DBP61 Dbp6p 42.97(n)
    38.11(a)
      855774   NP_014436.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons RH11 RNA helicase 1 46.61(n)
    41.4(a)
      827266  NM_117677.6  NP_193320.6 
    rice
    (Oryza sativa)
    Liliopsida Os02g07959001 hypothetical protein 48.3(n)
    42.4(a)
      4331005  NM_001054921.1  NP_001048386.1 


    ENSEMBL Gene Tree for DDX51 (if available)
    TreeFam Gene Tree for DDX51 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/217 NCBI SNPs in DDX51 are shown (see all 217    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 12 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs714531351,2
    C--132620570(+) TGCCC-/ACGGTG 1 -- int12Minor allele frequency- A:0.25NA 4
    rs1810061341,2
    --132620846(+) CCTCCC/TACCTC 1 -- int10--------
    rs1860397521,2
    --132620860(+) AGTGTA/GCCCAC 1 -- int10--------
    rs118319601,2
    C,A,H,--132620895(+) AGTGTA/GCCCAC 1 -- int10--------
    rs1840568091,2
    --132620937(+) CCCACA/GGTGCC 1 -- int10--------
    rs356185361,2
    C--132620954(+) CACCT-/CCCCGA 1 -- int10--------
    rs97881441,2
    C,F,H,--132620992(+) GTCTGC/TGAACC 1 -- int110Minor allele frequency- T:0.04NS EA NA 1190
    rs1178060121,2
    F,--132620993(+) TCTGCG/AAACCC 1 -- int12Minor allele frequency- A:0.04NA EA 240
    rs1134286101,2
    C,--132621022(+) TCAATC/TCCCGA 1 -- int12Minor allele frequency- T:0.25CSA WA 120
    rs1417690241,2
    --132621251(+) CTGTCA/GCCAGG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for DDX51 (132621139 - 132628880 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 2 variations for DDX51
         2 CNVs: 29932 29931

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DDX51
    DNA2.0 Custom Variant and Variant Library Synthesis for DDX51

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    DDX51 for disorders           About GeneDecksing

    1 disease for DDX51:    About MalaCards
    malaria


    Export disorders for DDX51 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DDX51 gene, integrated from 9 sources (see all 17):
    (articles sorted by number of sources associating them with DDX51)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PubMed id 17081983)1, 2 Olsen J.V....Mann M. (2006)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    5. Functional proteomics establishes the interaction of S IRT7 with chromatin remodeling complexes and expands its role in regulation of R NA polymerase I transcription. (PubMed id 22586326)1 Tsai Y.C....Cristea I.M. (2012)
    6. Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
    7. Full-length transcriptome analysis of human retina-derived cell lines ARPE-19 and Y79 using the vector-capping method. (PubMed id 21697133)1 Oshikawa M.... Kato S. (2011)
    8. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    9. Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis. (PubMed id 20068231)2 Olsen J.V....Mann M. (2010)
    10. Quantitative phosphoproteomic analysis of T cell receptor signaling reveals system-wide modulation of protein-protein interactions. (PubMed id 19690332)2 Mayya V.... Han D.K. (2009)

    (in PubMed, OMIM, and NCBI Bookshelf)
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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 317781 HGNC: 20082 AceView: DDX51 Ensembl:ENSG00000185163 euGenes: HUgn317781
    ECgene: DDX51 H-InvDB: DDX51

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DDX51 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for DDX51 gene:
    Search GeneIP for patents involving DDX51

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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