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Aliases for DDX47 Gene

Aliases for DDX47 Gene

  • DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 47 2 3
  • DEAD Box Protein 47 3 4
  • Probable ATP-Dependent RNA Helicase DDX47 3
  • DEAD Box Polypeptide 47 3
  • E4-DEAD Box Protein 3
  • EC 4
  • EC 3.6.1 63
  • MSTP162 3
  • E4-DBP 3
  • HQ0256 3
  • RRP3 3

External Ids for DDX47 Gene

Previous GeneCards Identifiers for DDX47 Gene

  • GC12P012866
  • GC12P012857
  • GC12P012771
  • GC12P012966

Summaries for DDX47 Gene

Entrez Gene Summary for DDX47 Gene

  • This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene can shuttle between the nucleus and the cytoplasm, and has an RNA-independent ATPase activity. Two alternatively spliced transcript variants encoding distinct isoforms have been found for this gene. [provided by RefSeq, Jul 2008]

GeneCards Summary for DDX47 Gene

DDX47 (DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 47) is a Protein Coding gene. GO annotations related to this gene include RNA binding and ATP-dependent helicase activity. An important paralog of this gene is DDX28.

UniProtKB/Swiss-Prot for DDX47 Gene

  • Involved in apoptosis. May have a role in rRNA processing and mRNA splicing. Associates with pre-rRNA precursors.

Gene Wiki entry for DDX47 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX47 Gene

Genomics for DDX47 Gene

Regulatory Elements for DDX47 Gene

Genomic Location for DDX47 Gene

12,813,316 bp from pter
12,829,981 bp from pter
16,666 bases
Plus strand

Genomic View for DDX47 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DDX47 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX47 Gene

Proteins for DDX47 Gene

  • Protein details for DDX47 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Recommended name:
    Probable ATP-dependent RNA helicase DDX47
    Protein Accession:
    Secondary Accessions:
    • B3KXP4
    • G5E955
    • Q96GM0
    • Q96NV8
    • Q9UI98

    Protein attributes for DDX47 Gene

    455 amino acids
    Molecular mass:
    50647 Da
    Quaternary structure:
    • Interacts with AGO1 and AGO2. Interacts with GABARAP. Interacts with NOL8; the interaction is RNA-dependent.
    • Sequence=AAF23354.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for DDX47 Gene

    Alternative splice isoforms for DDX47 Gene


neXtProt entry for DDX47 Gene

Proteomics data for DDX47 Gene at MOPED

Post-translational modifications for DDX47 Gene

  • Ubiquitination at Lys161 and Lys345
  • Modification sites at PhosphoSitePlus

Other Protein References for DDX47 Gene

Antibody Products

Domains for DDX47 Gene

Gene Families for DDX47 Gene

Suggested Antigen Peptide Sequences for DDX47 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry



  • Contains 1 helicase ATP-binding domain.
  • Belongs to the DEAD box helicase family. DDX47/RRP3 subfamily.
  • Contains 1 helicase ATP-binding domain.
  • Contains 1 helicase C-terminal domain.
  • Belongs to the DEAD box helicase family. DDX47/RRP3 subfamily.
genes like me logo Genes that share domains with DDX47: view

Function for DDX47 Gene

Molecular function for DDX47 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O = ADP + phosphate
UniProtKB/Swiss-Prot Function:
Involved in apoptosis. May have a role in rRNA processing and mRNA splicing. Associates with pre-rRNA precursors.

Enzyme Numbers (IUBMB) for DDX47 Gene

Gene Ontology (GO) - Molecular Function for DDX47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding --
GO:0003677 DNA binding --
GO:0004004 ATP-dependent RNA helicase activity IBA --
GO:0005515 protein binding IPI 15977068
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with DDX47: view

Animal Model Products

miRNA for DDX47 Gene

miRTarBase miRNAs that target DDX47

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DDX47

In Situ Assay Products

Flow Cytometry Products

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for DDX47 Gene

Localization for DDX47 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DDX47 Gene

Nucleus, nucleolus. Note=Localizes in the nucleolar-organizing region during ribosome biogenesis.

Subcellular locations from

Jensen Localization Image for DDX47 Gene COMPARTMENTS Subcellular localization image for DDX47 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for DDX47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005730 nucleolus IDA --
GO:0005737 cytoplasm IBA --
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with DDX47: view

Pathways for DDX47 Gene

SuperPathways for DDX47 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDX47 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006200 obsolete ATP catabolic process --
GO:0006364 rRNA processing IMP 16963496
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IMP 16963496
GO:0008625 extrinsic apoptotic signaling pathway via death domain receptors IDA 15977068
genes like me logo Genes that share ontologies with DDX47: view

No data available for Pathways by source for DDX47 Gene

Transcripts for DDX47 Gene

Unigene Clusters for DDX47 Gene

DEAD (Asp-Glu-Ala-Asp) box polypeptide 47:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DDX47

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DDX47 Gene

No ASD Table

Relevant External Links for DDX47 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for DDX47 Gene

mRNA expression in normal human tissues for DDX47 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for DDX47 Gene

This gene is overexpressed in Lung (31.7) and Blymphocyte (6.5).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for DDX47 Gene

SOURCE GeneReport for Unigene cluster for DDX47 Gene Hs.719938

genes like me logo Genes that share expressions with DDX47: view

Expression partners for DDX47 Gene

* - Elite partner

Primer Products

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for DDX47 Gene

Orthologs for DDX47 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for DDX47 Gene

Organism Taxonomy Gene Similarity Type Details
(Bos Taurus)
Mammalia DDX47 35
  • 89.45 (n)
  • 96.92 (a)
DDX47 36
  • 96 (a)
(Canis familiaris)
Mammalia DDX47 35
  • 91.61 (n)
  • 97.75 (a)
DDX47 36
  • 92 (a)
(Mus musculus)
Mammalia Ddx47 35
  • 87.55 (n)
  • 96.04 (a)
Ddx47 16
Ddx47 36
  • 96 (a)
(Pan troglodytes)
Mammalia DDX47 35
  • 99.71 (n)
  • 99.56 (a)
DDX47 36
  • 100 (a)
(Rattus norvegicus)
Mammalia Ddx47 35
  • 87.11 (n)
  • 96.48 (a)
(Monodelphis domestica)
Mammalia DDX47 36
  • 89 (a)
(Ornithorhynchus anatinus)
Mammalia DDX47 36
  • 87 (a)
(Gallus gallus)
Aves DDX47 35
  • 79.72 (n)
  • 92.63 (a)
DDX47 36
  • 89 (a)
(Anolis carolinensis)
Reptilia DDX47 36
  • 89 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia ddx47 35
  • 76.62 (n)
  • 89.37 (a)
LOC394710 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.8006 35
(Danio rerio)
Actinopterygii ddx47 35
  • 69.6 (n)
  • 78.85 (a)
Dr.14725 35
ddx47 36
  • 85 (a)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP009808 35
  • 62.25 (n)
  • 71.69 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG9253 35
  • 64.56 (n)
  • 71.85 (a)
CG9253 36
  • 62 (a)
(Caenorhabditis elegans)
Secernentea CELE_T26G10.1 35
  • 61.76 (n)
  • 65.29 (a)
T26G10.1 36
  • 55 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AAL041C 35
  • 56.66 (n)
  • 55.43 (a)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C14608g 35
  • 56.04 (n)
  • 56.58 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RRP3 35
  • 57.58 (n)
  • 57 (a)
RRP3 36
  • 46 (a)
RRP3 38
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G60990 35
  • 62.01 (n)
  • 60.64 (a)
(Oryza sativa)
Liliopsida Os.5421 35
Os03g0669000 35
  • 61.28 (n)
  • 57.85 (a)
(Triticum aestivum)
Liliopsida Ta.10537 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.2700 35
bread mold
(Neurospora crassa)
Ascomycetes NCU04504 35
  • 59.37 (n)
  • 61.75 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC823.08c 35
  • 62.9 (n)
  • 65.85 (a)
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 68 (a)
Species with no ortholog for DDX47:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for DDX47 Gene

Gene Tree for DDX47 (if available)
Gene Tree for DDX47 (if available)

Paralogs for DDX47 Gene

Paralogs for DDX47 Gene

genes like me logo Genes that share paralogs with DDX47: view

Variants for DDX47 Gene

Sequence variations from dbSNP and Humsavar for DDX47 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type MAF
rs960892 -- 12,814,508(+) CATCA(A/G)TGGGC intron-variant
rs1010878 -- 12,824,466(-) AAACA(C/T)GAGAA intron-variant
rs1051374 -- 12,814,193(+) AAGAT(C/T)CAGAT reference, synonymous-codon
rs2058609 -- 12,817,858(+) GCTGT(A/G)GGCAG intron-variant
rs2302604 -- 12,813,217(+) GCGCC(C/T)ATATT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DDX47 Gene

Variant ID Type Subtype PubMed ID
esv2745567 CNV Deletion 23290073

Relevant External Links for DDX47 Gene

HapMap Linkage Disequilibrium report
Human Gene Mutation Database (HGMD)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DDX47 Gene

Disorders for DDX47 Gene

No disorders were found for DDX47 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships , Genatlas and External Links for DDX47 Gene

Publications for DDX47 Gene

  1. NOP132 is required for proper nucleolus localization of DEAD-box RNA helicase DDX47. (PMID: 16963496) Sekiguchi T. … Nishimoto T. (Nucleic Acids Res. 2006) 3 4
  2. Proteomic and functional analysis of Argonaute-containing mRNA- protein complexes in human cells. (PMID: 17932509) Hoeck J. … Meister G. (EMBO Rep. 2007) 3 4
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4
  4. Functional proteomic analysis of human nucleolus. (PMID: 12429849) Scherl A. … Diaz J.-J. (Mol. Biol. Cell 2002) 3 4
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4

Products for DDX47 Gene

Sources for DDX47 Gene

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