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Aliases for DDX46 Gene

Aliases for DDX46 Gene

  • DEAD-Box Helicase 46 2 3 5
  • DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 46 2 3
  • DEAD Box Protein 46 3 4
  • PRP5 Homolog 3 4
  • Probable ATP-Dependent RNA Helicase DDX46 3
  • Prp5-Like DEAD-Box Protein 3
  • RNA Helicase 3
  • EC 3.6.4.13 4
  • KIAA0801 4
  • EC 3.6.1 58
  • PRPF5 3
  • Prp5 3

External Ids for DDX46 Gene

Previous GeneCards Identifiers for DDX46 Gene

  • GC05P134125
  • GC05P134170
  • GC05P134122
  • GC05P134094
  • GC05P129280

Summaries for DDX46 Gene

Entrez Gene Summary for DDX46 Gene

  • This gene encodes a member of the DEAD box protein family. DEAD box proteins, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD), are putative RNA helicases. They are implicated in a number of cellular processes involving alteration of RNA secondary structure, such as translation initiation, nuclear and mitochondrial splicing, and ribosome and spliceosome assembly. Based on their distribution patterns, some members of this family are believed to be involved in embryogenesis, spermatogenesis, and cellular growth and division. The protein encoded by this gene is a component of the 17S U2 snRNP complex; it plays an important role in pre-mRNA splicing. Multiple alternatively spliced transcript variants have been found for this gene. [provided by RefSeq, Jul 2014]

GeneCards Summary for DDX46 Gene

DDX46 (DEAD-Box Helicase 46) is a Protein Coding gene. Among its related pathways are mRNA Splicing - Major Pathway and Gene Expression. GO annotations related to this gene include nucleic acid binding and ATP-dependent RNA helicase activity. An important paralog of this gene is DDX42.

UniProtKB/Swiss-Prot for DDX46 Gene

  • Plays an essential role in splicing, either prior to, or during splicing A complex formation.

Gene Wiki entry for DDX46 Gene

Additional gene information for DDX46 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX46 Gene

Genomics for DDX46 Gene

Regulatory Elements for DDX46 Gene

Enhancers for DDX46 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H134546 2 FANTOM5 Ensembl ENCODE dbSUPER 61.2 -206.7 -206675 10 HDGF PKNOX1 ARNT SIN3A YBX1 GLI4 BRCA1 ZBTB7B TCF12 GLIS2 DDX46 SEC24A C5orf66 CAMLG PPP2CA JADE2 CATSPER3 UBE2B TXNDC15 CDKL3
GH05H134464 2 FANTOM5 Ensembl ENCODE dbSUPER 49.6 -292.5 -292476 2 PKNOX1 FOXA2 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143 FOS ZNF548 DDX46 C5orf24 TXNDC15 C5orf66 PPP2CA SEC24A UBE2B LOC102546229 RNU6-456P
GH05H134630 1.4 ENCODE dbSUPER 60.7 -126.5 -126534 2 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B YY1 DDX46 JADE2 C5orf66 TXNDC15 SEC24A C5orf24 SKP1 C5orf66-AS1 CAMLG RNU6-1311P
GH05H134369 1.4 ENCODE dbSUPER 56.4 -387.2 -387213 3 MLX DMAP1 YY1 ZNF143 ZNF548 SP3 NFYC MEF2D ZNF610 GLIS1 DDX46 SKP1 JADE2 C5orf24 SEC24A ENSG00000248559 C5orf66 CDKL3 ENSG00000279469
GH05H134508 1.9 FANTOM5 Ensembl ENCODE dbSUPER 36.7 -247.9 -247911 4 HDGF PKNOX1 FOXA2 ZFP64 ARID4B DMAP1 ZBTB7B YY1 ZNF766 ZNF416 DDX46 C5orf24 RPS10P11 CDKN2AIPNL ENSG00000248559 CATSPER3 SKP1 LINC01843 CAMLG RN7SL541P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DDX46 on UCSC Golden Path with GeneCards custom track

Promoters for DDX46 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000187115 266 1601 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9

Genomic Location for DDX46 Gene

Chromosome:
5
Start:
134,758,734 bp from pter
End:
134,855,133 bp from pter
Size:
96,400 bases
Orientation:
Plus strand

Genomic View for DDX46 Gene

Genes around DDX46 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX46 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX46 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX46 Gene

Proteins for DDX46 Gene

  • Protein details for DDX46 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7L014-DDX46_HUMAN
    Recommended name:
    Probable ATP-dependent RNA helicase DDX46
    Protein Accession:
    Q7L014
    Secondary Accessions:
    • O94894
    • Q96EI0
    • Q9Y658

    Protein attributes for DDX46 Gene

    Size:
    1031 amino acids
    Molecular mass:
    117362 Da
    Quaternary structure:
    • Integral component of the 17S U2 snRNP.
    SequenceCaution:
    • Sequence=BAA34521.2; Type=Erroneous initiation; Evidence={ECO:0000305};

neXtProt entry for DDX46 Gene

Selected DME Specific Peptides for DDX46 Gene

Q7L014:
  • DMGFEPQ
  • YEPFRKNFYVEVPELA
  • SSGFSGKGFKFDETE
  • VKGKGCPKPIK
  • LKRGAEI
  • ATSVAARGLD
  • VLDEADRM
  • AKTGSGKT
  • LEEEMRKRKERVEKWREEQRK
  • ASYPCMSLHGGIDQYDRDSIINDFKNG
  • KRYEEELEINDFPQTARWKVTSKEALQRI
  • TPTRELA
  • DPLDAYM
  • EVQVGGRSVVCSDVEQ
  • GSVIIFVDKQEHADGLLKDLM
  • TGSGKTIAF
  • KKKGELMENDQDAMEYSSEEEEVDLQTALTG
  • DIDEQIESMFNSKKRVKD
  • VCTPGRMI
  • QAIPAIMS
  • ALANERKKLQK
  • IMTPTREL
  • GRDLIGI
  • GRTGRAG
  • AEKINAKLNY
  • TNLRRVT
  • ECKKFSK
  • VIVIEEEKKFLKLLE
  • PAIMSGRD
  • ANSGRVTNL
  • EYSEAAITIRGTYFPPGKEPKEGERKIYLAIESANELAV
  • EEMKQGKKWSLEDDD
  • VTKVVTVV
  • QIAELKRGA
  • WVQCGISMK
  • AFLLPMFRHI
  • PNHYEDYVHR
  • PTRELALQ

Post-translational modifications for DDX46 Gene

  • Ubiquitination at posLast=422422, isoforms=493, isoforms=686, posLast=716716, posLast=894894, posLast=907907, and isoforms=1025
  • Modification sites at PhosphoSitePlus

Domains & Families for DDX46 Gene

Gene Families for DDX46 Gene

HGNC:
Human Protein Atlas (HPA):
  • Enzymes
  • Plasma proteins
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for DDX46 Gene

Graphical View of Domain Structure for InterPro Entry

Q7L014

UniProtKB/Swiss-Prot:

DDX46_HUMAN :
  • Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
Family:
  • Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily.
genes like me logo Genes that share domains with DDX46: view

Function for DDX46 Gene

Molecular function for DDX46 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O = ADP + phosphate.
UniProtKB/Swiss-Prot Function:
Plays an essential role in splicing, either prior to, or during splicing A complex formation.

Enzyme Numbers (IUBMB) for DDX46 Gene

Phenotypes From GWAS Catalog for DDX46 Gene

Gene Ontology (GO) - Molecular Function for DDX46 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA,IDA 22681889
GO:0004004 ATP-dependent RNA helicase activity IBA --
GO:0004386 helicase activity IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with DDX46: view
genes like me logo Genes that share phenotypes with DDX46: view

Animal Model Products

CRISPR Products

miRNA for DDX46 Gene

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for DDX46
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DDX46 Gene

Localization for DDX46 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DDX46 Gene

Nucleus speckle. Nucleus, Cajal body. Membrane; Lipid-anchor. Note=Present in Cajal bodies (CBs) and nuclear speckles.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DDX46 gene
Compartment Confidence
nucleus 5
cytosol 2

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nuclear speckles (4)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for DDX46 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001650 fibrillar center IDA --
GO:0005634 nucleus IEA,IDA 16791210
GO:0005654 nucleoplasm TAS --
GO:0005730 nucleolus IBA --
GO:0005737 cytoplasm IBA --
genes like me logo Genes that share ontologies with DDX46: view

Pathways & Interactions for DDX46 Gene

genes like me logo Genes that share pathways with DDX46: view

Pathways by source for DDX46 Gene

Gene Ontology (GO) - Biological Process for DDX46 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000398 mRNA splicing, via spliceosome TAS --
GO:0006397 mRNA processing IEA --
GO:0008380 RNA splicing IEA --
GO:0010468 regulation of gene expression IBA --
GO:0010501 RNA secondary structure unwinding IBA --
genes like me logo Genes that share ontologies with DDX46: view

No data available for SIGNOR curated interactions for DDX46 Gene

Drugs & Compounds for DDX46 Gene

(3) Drugs for DDX46 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
ATP Nutra Agonist 0

(1) Additional Compounds for DDX46 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
genes like me logo Genes that share compounds with DDX46: view

Transcripts for DDX46 Gene

Unigene Clusters for DDX46 Gene

DEAD (Asp-Glu-Ala-Asp) box polypeptide 46:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for DDX46
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for DDX46 Gene

ExUns: 1a · 1b ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11a · 11b ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17a · 17b ^ 18 ^ 19 ^
SP1: - - - - -
SP2: -
SP3: - - - - -
SP4: - - -
SP5:
SP6: - -
SP7:
SP8: - - -
SP9:
SP10:

ExUns: 20a · 20b ^ 21 ^ 22 ^ 23 ^ 24 ^ 25 ^ 26a · 26b
SP1:
SP2:
SP3:
SP4:
SP5: -
SP6:
SP7:
SP8:
SP9:
SP10:

Relevant External Links for DDX46 Gene

GeneLoc Exon Structure for
DDX46
ECgene alternative splicing isoforms for
DDX46

Expression for DDX46 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DDX46 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for DDX46 Gene

This gene is overexpressed in Nasal epithelium (10.3), Lymph node (10.2), and Peripheral blood mononuclear cells (9.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DDX46 Gene



Protein tissue co-expression partners for DDX46 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of DDX46 Gene:

DDX46

SOURCE GeneReport for Unigene cluster for DDX46 Gene:

Hs.406549

Evidence on tissue expression from TISSUES for DDX46 Gene

  • Nervous system(4.6)
  • Eye(4.4)
  • Liver(4.4)
genes like me logo Genes that share expression patterns with DDX46: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX46 Gene

Orthologs for DDX46 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for DDX46 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia DDX46 34
  • 100 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia DDX46 33 34
  • 99.74 (n)
oppossum
(Monodelphis domestica)
Mammalia DDX46 34
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DDX46 33 34
  • 94.15 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia DDX46 34
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Ddx46 33 16 34
  • 89.48 (n)
rat
(Rattus norvegicus)
Mammalia Ddx46 33
  • 88.47 (n)
chicken
(Gallus gallus)
Aves DDX46 33 34
  • 82.99 (n)
lizard
(Anolis carolinensis)
Reptilia DDX46 34
  • 92 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ddx46 33
  • 78.82 (n)
African clawed frog
(Xenopus laevis)
Amphibia Xl.13242 33
zebrafish
(Danio rerio)
Actinopterygii ddx46 33 34
  • 72.5 (n)
Dr.25491 33
fruit fly
(Drosophila melanogaster)
Insecta CG6227 33 34
  • 60.08 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP010656 33
  • 46.33 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_F53H1.1 33
  • 56.34 (n)
F53H1.1 34
  • 50 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DBP2 34
  • 38 (a)
OneToMany
PRP5 36
thale cress
(Arabidopsis thaliana)
eudicotyledons AT1G20920 33
  • 56.23 (n)
rice
(Oryza sativa)
Liliopsida Os08g0159900 33
  • 55.43 (n)
Os.24620 33
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4221 34
  • 62 (a)
OneToOne
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes prp11 33
  • 56.49 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU02696 33
  • 53.46 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.5602 33
Species where no ortholog for DDX46 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DDX46 Gene

ENSEMBL:
Gene Tree for DDX46 (if available)
TreeFam:
Gene Tree for DDX46 (if available)

Paralogs for DDX46 Gene

Paralogs for DDX46 Gene

genes like me logo Genes that share paralogs with DDX46: view

Variants for DDX46 Gene

Sequence variations from dbSNP and Humsavar for DDX46 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000000691 -- 134,816,818(+) TTTCT(A/G)ACTGT intron-variant
rs1000019324 -- 134,817,147(+) AACAT(C/T)CAAAT intron-variant
rs1000060014 -- 134,813,093(+) CGCGC(C/T)ACCAT intron-variant
rs1000072917 -- 134,780,050(+) ACCAC(C/T)GTACT intron-variant
rs1000112139 -- 134,765,823(+) AATAT(A/T)CACCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DDX46 Gene

Variant ID Type Subtype PubMed ID
dgv5810n100 CNV gain 25217958
esv3400590 CNV duplication 20981092
esv3575882 CNV gain 25503493
nsv1109727 CNV deletion 24896259
nsv512860 CNV insertion 21212237
nsv523937 CNV gain 19592680
nsv830493 CNV loss 17160897
nsv830494 CNV gain+loss 17160897

Variation tolerance for DDX46 Gene

Residual Variation Intolerance Score: 5.06% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.47; 10.16% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DDX46 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX46

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DDX46 Gene

Disorders for DDX46 Gene

Relevant External Links for DDX46

Genetic Association Database (GAD)
DDX46
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DDX46

No disorders were found for DDX46 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DDX46 Gene

Publications for DDX46 Gene

  1. Many sequence variants affecting diversity of adult human height. (PMID: 18391951) Gudbjartsson DF … Stefansson K (Nature genetics 2008) 3 45 60
  2. Global, in vivo, and site-specific phosphorylation dynamics in signaling networks. (PMID: 17081983) Olsen JV … Mann M (Cell 2006) 3 4 60
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 60
  4. Characterization of novel SF3b and 17S U2 snRNP proteins, including a human Prp5p homologue and an SF3b DEAD-box protein. (PMID: 12234937) Will CL … Lührmann R (The EMBO journal 2002) 3 4 60
  5. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PMID: 9872452) Nagase T … Ohara O (DNA research : an international journal for rapid publication of reports on genes and genomes 1998) 3 4 60

Products for DDX46 Gene

Sources for DDX46 Gene

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