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Aliases for DDX43 Gene

Aliases for DDX43 Gene

  • DEAD-Box Helicase 43 2 3 5
  • Cancer/Testis Antigen 13 2 3 4
  • DEAD (Asp-Glu-Ala-Asp) Box Polypeptide 43 2 3
  • DEAD Box Protein HAGE 3 4
  • Helical Antigen 3 4
  • CT13 3 4
  • HAGE 3 4
  • Probable ATP-Dependent RNA Helicase DDX43 3
  • DEAD-Box Protein 43 3
  • DEAD Box Protein 43 4
  • EC 3.6.4.13 4
  • EC 3.6.1 61

External Ids for DDX43 Gene

Previous GeneCards Identifiers for DDX43 Gene

  • GC06P074054
  • GC06P074100
  • GC06P074161
  • GC06P071302
  • GC06P074104

Summaries for DDX43 Gene

Entrez Gene Summary for DDX43 Gene

  • The protein encoded by this gene is an ATP-dependent RNA helicase in the DEAD-box family and displays tumor-specific expression. [provided by RefSeq, Jul 2008]

CIViC summary for DDX43 Gene

GeneCards Summary for DDX43 Gene

DDX43 (DEAD-Box Helicase 43) is a Protein Coding gene. Diseases associated with DDX43 include Rheumatoid Lung Disease. GO annotations related to this gene include nucleic acid binding and ATP-dependent RNA helicase activity. An important paralog of this gene is DDX53.

Gene Wiki entry for DDX43 Gene

No data available for UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX43 Gene

Genomics for DDX43 Gene

Regulatory Elements for DDX43 Gene

Enhancers for DDX43 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G073421 1.1 Ensembl ENCODE 11.8 +27.9 27876 2.0 HDAC1 TBP PKNOX1 CBX3 ATF1 NFRKB TCF12 ZNF766 CREM ZBTB11 DDX43 OOEP RPS6P8 RPL39P3 OOEP-AS1 MB21D1
GH06G072552 1.2 Ensembl ENCODE 4.6 -840.3 -840345 3.5 HDGF PKNOX1 SIN3A ZNF121 GLIS2 FOS KLF13 ZNF263 ZNF518A SMARCA4 DDX43 GC06P072583 LOC100422453
GH06G073348 0.5 ENCODE 10.3 -45.2 -45224 2.2 BCL11A POU5F1 KDM1A CHD7 ETS1 RPL39P3 OOEP-AS1 OOEP KHDC1 RPS6P8 DDX43 MTO1 SLC17A5 DPPA5 PAICSP3
GH06G073277 0.3 FANTOM5 10.6 -116.5 -116532 0.3 KHDC1 RPS6P8 DDX43 OOEP RPSAP41 ENSG00000229852
GH06G073272 0.3 FANTOM5 10.4 -122.5 -122507 0.0 KHDC1 DPPA5 KHDC3L RPS6P8 OOEP DDX43 ENSG00000229852 RPSAP41
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DDX43 on UCSC Golden Path with GeneCards custom track

Promoters for DDX43 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000198839 438 400 PKNOX1 ZNF687 SIN3A CHD1 MAX MNT ZBTB7B POLR2A CREB1 ZBTB33

Transcription factor binding sites by QIAGEN in the DDX43 gene promoter:

Genomic Location for DDX43 Gene

Chromosome:
6
Start:
73,394,562 bp from pter
End:
73,417,569 bp from pter
Size:
23,008 bases
Orientation:
Plus strand

Genomic View for DDX43 Gene

Genes around DDX43 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX43 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX43 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX43 Gene

Proteins for DDX43 Gene

  • Protein details for DDX43 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NXZ2-DDX43_HUMAN
    Recommended name:
    Probable ATP-dependent RNA helicase DDX43
    Protein Accession:
    Q9NXZ2
    Secondary Accessions:
    • B4E0C8
    • Q6NXR1

    Protein attributes for DDX43 Gene

    Size:
    648 amino acids
    Molecular mass:
    72844 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for DDX43 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DDX43 Gene

Selected DME Specific Peptides for DDX43 Gene

Q9NXZ2:
  • DMGFEPQ
  • VLTPTREL
  • TPTRELA
  • IIATPGR
  • HRIGRTGR
  • GRTGRAG
  • TDLASRG
  • AQTGTGKT
  • DEADKML
  • IATPGRL
  • PTRELALQ

Post-translational modifications for DDX43 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DDX43 Gene

Domains & Families for DDX43 Gene

Gene Families for DDX43 Gene

Suggested Antigen Peptide Sequences for DDX43 Gene

Graphical View of Domain Structure for InterPro Entry

Q9NXZ2

UniProtKB/Swiss-Prot:

DDX43_HUMAN :
  • Belongs to the DEAD box helicase family.
Family:
  • Belongs to the DEAD box helicase family.
genes like me logo Genes that share domains with DDX43: view

Function for DDX43 Gene

Molecular function for DDX43 Gene

UniProtKB/Swiss-Prot CatalyticActivity:
ATP + H(2)O = ADP + phosphate.

Enzyme Numbers (IUBMB) for DDX43 Gene

Gene Ontology (GO) - Molecular Function for DDX43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003676 nucleic acid binding IEA --
GO:0003723 RNA binding IEA,TAS --
GO:0004004 ATP-dependent RNA helicase activity TAS 10919659
GO:0004386 helicase activity IEA --
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with DDX43: view
genes like me logo Genes that share phenotypes with DDX43: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX43 Gene

Localization for DDX43 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DDX43 gene
Compartment Confidence
nucleus 4
cytosol 2
mitochondrion 1

Gene Ontology (GO) - Cellular Components for DDX43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular IDA --
genes like me logo Genes that share ontologies with DDX43: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for DDX43 Gene

Pathways & Interactions for DDX43 Gene

SuperPathways for DDX43 Gene

No Data Available

Gene Ontology (GO) - Biological Process for DDX43 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0010501 RNA secondary structure unwinding IBA --
genes like me logo Genes that share ontologies with DDX43: view

No data available for Pathways by source and SIGNOR curated interactions for DDX43 Gene

Drugs & Compounds for DDX43 Gene

(3) Drugs for DDX43 Gene - From: HMDB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Phosphoric acid Approved Pharma 0
Water Approved Pharma 0
Adenosine triphosphate Approved Nutra 0

(1) Additional Compounds for DDX43 Gene - From: HMDB

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
ADP
  • Adenosindiphosphorsaeure
  • Adenosine 5'-pyrophosphate
  • Adenosine diphosphate
  • Adenosine pyrophosphate
  • Adenosine-5'-diphosphate
Full agonist, Agonist 58-64-0
genes like me logo Genes that share compounds with DDX43: view

Transcripts for DDX43 Gene

Unigene Clusters for DDX43 Gene

DEAD (Asp-Glu-Ala-Asp) box polypeptide 43:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DDX43 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1: -
SP2: - -
SP3:

Relevant External Links for DDX43 Gene

GeneLoc Exon Structure for
DDX43
ECgene alternative splicing isoforms for
DDX43

Expression for DDX43 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DDX43 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for DDX43 Gene

This gene is overexpressed in Testis (x14.8).

Protein differential expression in normal tissues from HIPED for DDX43 Gene

This gene is overexpressed in Testis (39.7), Ovary (18.4), and Lung (7.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DDX43 Gene



Protein tissue co-expression partners for DDX43 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of DDX43 Gene:

DDX43

SOURCE GeneReport for Unigene cluster for DDX43 Gene:

Hs.125507

mRNA Expression by UniProt/SwissProt for DDX43 Gene:

Q9NXZ2-DDX43_HUMAN
Tissue specificity: Expressed in testis. Expressed in many tumors of various histological types at a level that is 100-fold higher than the level observed in normal tissues except testis.
genes like me logo Genes that share expression patterns with DDX43: view

Primer Products

No data available for Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX43 Gene

Orthologs for DDX43 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for DDX43 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DDX43 34 35
  • 99.54 (n)
mouse
(Mus musculus)
Mammalia Ddx43 34 16 35
  • 79.66 (n)
rat
(Rattus norvegicus)
Mammalia Ddx43 34
  • 79.28 (n)
dog
(Canis familiaris)
Mammalia LOC102151353 34
  • 77.96 (n)
cow
(Bos Taurus)
Mammalia DDX43 34 35
  • 76.18 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 68 (a)
ManyToMany
-- 35
  • 63 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 60 (a)
ManyToMany
-- 35
  • 58 (a)
ManyToMany
chicken
(Gallus gallus)
Aves DDX43 34
  • 63.33 (n)
-- 35
  • 58 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 58 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia ddx43 34
  • 63.13 (n)
zebrafish
(Danio rerio)
Actinopterygii ddx43 35
  • 48 (a)
OneToMany
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.6611 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP004351 34
  • 54.81 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG7878 34 35
  • 52.82 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_Y54G11A.3 34
  • 48.88 (n)
Y54G11A.3 35
  • 42 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes DBP2 35
  • 37 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.14598 34
Species where no ortholog for DDX43 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for DDX43 Gene

ENSEMBL:
Gene Tree for DDX43 (if available)
TreeFam:
Gene Tree for DDX43 (if available)

Paralogs for DDX43 Gene

Paralogs for DDX43 Gene

(11) SIMAP similar genes for DDX43 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for DDX43 Gene

genes like me logo Genes that share paralogs with DDX43: view

Variants for DDX43 Gene

Sequence variations from dbSNP and Humsavar for DDX43 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000156678 -- 73,394,213(+) TTACA(A/G)CCATT upstream-variant-2KB
rs1000161828 -- 73,406,260(+) CAGGA(G/T)ATCTG intron-variant
rs1000193229 -- 73,403,441(+) CTCCA(A/G)CCTGG intron-variant
rs1000245719 -- 73,403,115(+) GGAAG(A/G)TTTGG intron-variant
rs1000530045 -- 73,394,958(+) TAGTC(A/G)GCGAA reference, missense, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for DDX43 Gene

Variant ID Type Subtype PubMed ID
esv3609509 CNV loss 21293372
nsv518515 CNV loss 19592680
nsv830693 CNV loss 17160897

Variation tolerance for DDX43 Gene

Residual Variation Intolerance Score: 26.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.46; 91.00% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DDX43 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX43

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DDX43 Gene

Disorders for DDX43 Gene

MalaCards: The human disease database

(1) MalaCards diseases for DDX43 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
rheumatoid lung disease
  • rheumatoid lung
- elite association - COSMIC cancer census association via MalaCards
Search DDX43 in MalaCards View complete list of genes associated with diseases

Relevant External Links for DDX43

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DDX43
genes like me logo Genes that share disorders with DDX43: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DDX43 Gene

Publications for DDX43 Gene

  1. Identification on a human sarcoma of two new genes with tumor- specific expression. (PMID: 10919659) Martelange V.M.F. … Boon T. (Cancer Res. 2000) 2 3 4 22 64
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  3. Towards a catalog of human genes and proteins: sequencing and analysis of 500 novel complete protein coding human cDNAs. (PMID: 11230166) Wiemann S. … Poustka A. (Genome Res. 2001) 3 4 64
  4. HAGE in Triple-Negative Breast Cancer Is a Novel Prognostic, Predictive, and Actionable Biomarker: A Transcriptomic and Protein Expression Analysis. (PMID: 26240276) Abdel-Fatah T.M. … Chan S.Y. (Clin. Cancer Res. 2016) 3 64
  5. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64

Products for DDX43 Gene

Sources for DDX43 Gene

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