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Aliases for DDX39B-AS1 Gene

Subcategory (RNA class) for DDX39B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DDX39B-AS1 Gene

  • DDX39B Antisense RNA 1 2 3 5
  • DDX39B Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG296P20.15 3

External Ids for DDX39B-AS1 Gene

Previous GeneCards Identifiers for DDX39B-AS1 Gene

  • GC00U933577
  • GC06P031511

Summaries for DDX39B-AS1 Gene

GeneCards Summary for DDX39B-AS1 Gene

DDX39B-AS1 (DDX39B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DDX39B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX39B-AS1 Gene

Genomics for DDX39B-AS1 Gene

Regulatory Elements for DDX39B-AS1 Gene

Enhancers for DDX39B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06H031567 2 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +36.1 36115 22 HDGF PKNOX1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 ZBTB7B TNF DDX39B LY6G5B ATF6B LSM2 TCF19 MDC1 DHX16 NFKBIL1 C6orf47
GH06H030678 1.9 FANTOM5 ENCODE dbSUPER 11 -857.0 -856979 13 MLX DMAP1 YBX1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC MEF2D PPP1R10 MDC1 IER3 NRM TRIM39 RPL7P4 DHX16 ABCF1 HLA-E PPP1R18
GH06H031733 1.9 FANTOM5 ENCODE dbSUPER 11 +195.2 195151 8 MLX ZFP64 YBX1 FEZF1 DMAP1 YY1 SLC30A9 SP3 NFYC ZC3H11A LY6G5B ATF6B DDX39B LSM2 CSNK2B GPANK1 VARS NFKBIL1 SKIV2L MSH5
GH06H031725 1.6 Ensembl ENCODE dbSUPER 11 +186.3 186277 5 HNRNPUL1 HDGF PKNOX1 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B DDX39B LY6G5B ATF6B LSM2 SKIV2L PBX2 CSNK2B NFKBIL1 DXO MSH5
GH06H031619 1.4 ENCODE dbSUPER 11.1 +78.9 78924 4 ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC MEF2D SSRP1 ZNF610 LSM2 ATF6B GTF2H4 LY6G5B MDC1 PPT2 DDX39B EGFL8 NFKBIL1 DXO
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DDX39B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195555 -404 2601 MLX ZFP64 FEZF1 DMAP1 YY1 ZNF143 SP3 PPARGC1A MEF2D SSRP1

Genomic Location for DDX39B-AS1 Gene

Chromosome:
6
Start:
31,542,304 bp from pter
End:
31,543,138 bp from pter
Size:
835 bases
Orientation:
Plus strand

Genomic View for DDX39B-AS1 Gene

Genes around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX39B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX39B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for DDX39B-AS1 Gene

Post-translational modifications for DDX39B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX39B-AS1 Gene

Domains & Families for DDX39B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DDX39B-AS1 Gene

Function for DDX39B-AS1 Gene

Phenotypes From GWAS Catalog for DDX39B-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for DDX39B-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX39B-AS1 Gene

Localization for DDX39B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DDX39B-AS1 Gene

Pathways & Interactions for DDX39B-AS1 Gene

SuperPathways for DDX39B-AS1 Gene

No Data Available

Interacting Proteins for DDX39B-AS1 Gene

Gene Ontology (GO) - Biological Process for DDX39B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DDX39B-AS1 Gene

Drugs & Compounds for DDX39B-AS1 Gene

No Compound Related Data Available

Transcripts for DDX39B-AS1 Gene

mRNA/cDNA for DDX39B-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

  • Applied Biological Materials Clones for DDX39B-AS1
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for DDX39B-AS1 Gene

No ASD Table

Relevant External Links for DDX39B-AS1 Gene

GeneLoc Exon Structure for
DDX39B-AS1
ECgene alternative splicing isoforms for
DDX39B-AS1

Expression for DDX39B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DDX39B-AS1 Gene

genes like me logo Genes that share expression patterns with DDX39B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX39B-AS1 Gene

Orthologs for DDX39B-AS1 Gene

Evolution for DDX39B-AS1 Gene

ENSEMBL:
Gene Tree for DDX39B-AS1 (if available)
TreeFam:
Gene Tree for DDX39B-AS1 (if available)

No data available for Orthologs for DDX39B-AS1 Gene

Paralogs for DDX39B-AS1 Gene

No data available for Paralogs for DDX39B-AS1 Gene

Variants for DDX39B-AS1 Gene

Sequence variations from dbSNP and Humsavar for DDX39B-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000206682 -- 31,543,039(+) TTTTC(C/T)TGAAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001076799 -- 31,543,436(+) AGTAT(C/G/T)ATTTA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003091793 -- 31,541,666(+) TCTCA(C/T)TGATG intron-variant, upstream-variant-2KB
rs1005744200 -- 31,542,507(+) CTCTT(A/T)CCCAG intron-variant, upstream-variant-2KB
rs1005852001 -- 31,542,047(+) CTCCC(G/T)CCTTC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for DDX39B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX39B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DDX39B-AS1 Gene

Disorders for DDX39B-AS1 Gene

Relevant External Links for DDX39B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DDX39B-AS1

No disorders were found for DDX39B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DDX39B-AS1 Gene

Publications for DDX39B-AS1 Gene

No publications were found for DDX39B-AS1 Gene.

Products for DDX39B-AS1 Gene

Sources for DDX39B-AS1 Gene

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