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Aliases for DDX39B-AS1 Gene

Subcategory (RNA class) for DDX39B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DDX39B-AS1 Gene

  • DDX39B Antisense RNA 1 2 3 5
  • DDX39B Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG296P20.15 3

External Ids for DDX39B-AS1 Gene

Previous GeneCards Identifiers for DDX39B-AS1 Gene

  • GC00U933577
  • GC06P031511

Summaries for DDX39B-AS1 Gene

GeneCards Summary for DDX39B-AS1 Gene

DDX39B-AS1 (DDX39B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX39B-AS1 Gene

Genomics for DDX39B-AS1 Gene

Regulatory Elements for DDX39B-AS1 Gene

Enhancers for DDX39B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06F031567 1.3 FANTOM5 Ensembl ENCODE 11.9 +36.0 35967 22.5 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF548 DDX39B TNF LY6G5B DHX16 ATF6B LSM2 MICA TCF19 C6orf47 PPT2
GH06F031614 0.5 ENCODE 11.8 +73.6 73557 3.6 ELF3 HDGF TBP HDAC1 ZNF121 ETV6 CREM TBX21 KAT8 SP1 BAG6 LY6G5B HLA-DRB1 SKIV2L LY6G5C LST1 LTB C4A DDX39B DDX39B-AS1
GH06F031486 0.2 Ensembl 11.4 -56.1 -56104 0.4 PPIAP9 MCCD1 RPL15P4 SNORD117 DDX39B ATP6V1G2 DDX39B-AS1 SLC44A4 GC06M031422 MICB
GH06F031619 1.2 ENCODE 11.2 +78.9 78924 4.0 CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 ZNF143 ZNF263 SP3 NFYC DDX39B LSM2 LY6G5B ATF6B PPT2 NFKBIL1 EGFL8 GTF2H4 BAG6 DHX16
GH06F031650 0.5 ENCODE 11.2 +110.2 110162 3.3 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263 DHX16 LY6G5B BAG6 DDX39B LY6G5C ATF6B LSM2 MICA PPT2 NFKBIL1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for DDX39B-AS1 Gene

Chromosome:
6
Start:
31,542,304 bp from pter
End:
31,543,138 bp from pter
Size:
835 bases
Orientation:
Plus strand

Genomic View for DDX39B-AS1 Gene

Genes around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX39B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX39B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for DDX39B-AS1 Gene

Post-translational modifications for DDX39B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX39B-AS1 Gene

Domains & Families for DDX39B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DDX39B-AS1 Gene

Function for DDX39B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX39B-AS1 Gene

Localization for DDX39B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DDX39B-AS1 Gene

Pathways & Interactions for DDX39B-AS1 Gene

SuperPathways for DDX39B-AS1 Gene

No Data Available

Interacting Proteins for DDX39B-AS1 Gene

Gene Ontology (GO) - Biological Process for DDX39B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DDX39B-AS1 Gene

Transcripts for DDX39B-AS1 Gene

mRNA/cDNA for DDX39B-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DDX39B-AS1 Gene

No ASD Table

Relevant External Links for DDX39B-AS1 Gene

GeneLoc Exon Structure for
DDX39B-AS1
ECgene alternative splicing isoforms for
DDX39B-AS1

Expression for DDX39B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DDX39B-AS1 Gene

genes like me logo Genes that share expression patterns with DDX39B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DDX39B-AS1 Gene

Orthologs for DDX39B-AS1 Gene

Evolution for DDX39B-AS1 Gene

ENSEMBL:
Gene Tree for DDX39B-AS1 (if available)
TreeFam:
Gene Tree for DDX39B-AS1 (if available)

No data available for Orthologs for DDX39B-AS1 Gene

Paralogs for DDX39B-AS1 Gene

No data available for Paralogs for DDX39B-AS1 Gene

Variants for DDX39B-AS1 Gene

Sequence variations from dbSNP and Humsavar for DDX39B-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs111541554 -- 31,540,727(+) TTTTC(C/G)ATCCC intron-variant, downstream-variant-500B, upstream-variant-2KB
rs113015863 -- 31,541,959(+) ACAGG(A/G)AGAGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs113045665 -- 31,540,708(-) GAGGT(C/G)GTGAT intron-variant, downstream-variant-500B, upstream-variant-2KB
rs113899279 -- 31,542,488(+) GCTCG(G/T)GGGTG intron-variant, upstream-variant-2KB
rs11444847 -- 31,541,084(+) GTTAT(-/G)GGATG intron-variant, downstream-variant-500B, upstream-variant-2KB

Relevant External Links for DDX39B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX39B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DDX39B-AS1 Gene

Disorders for DDX39B-AS1 Gene

Relevant External Links for DDX39B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DDX39B-AS1

No disorders were found for DDX39B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DDX39B-AS1 Gene

Publications for DDX39B-AS1 Gene

No publications were found for DDX39B-AS1 Gene.

Products for DDX39B-AS1 Gene

Sources for DDX39B-AS1 Gene

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