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Aliases for DDX39B-AS1 Gene

Subcategory (RNA class) for DDX39B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DDX39B-AS1 Gene

  • DDX39B Antisense RNA 1 2 3 5
  • DDX39B Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG296P20.15 3

External Ids for DDX39B-AS1 Gene

Previous GeneCards Identifiers for DDX39B-AS1 Gene

  • GC00U933577
  • GC06P031511

Summaries for DDX39B-AS1 Gene

GeneCards Summary for DDX39B-AS1 Gene

DDX39B-AS1 (DDX39B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DDX39B-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX39B-AS1 Gene

Genomics for DDX39B-AS1 Gene

GeneHancer (GH) Regulatory Elements for DDX39B-AS1 Gene

Promoters and enhancers for DDX39B-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06I031538 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 550.8 -1.2 -1165 4.9 MLX ZFP64 FEZF1 DMAP1 IRF4 YY1 ZNF213 E2F8 ZNF143 ZNF263 DDX39B DDX39B-AS1 GC06M031542 GC06M031543 GC06M031550 GC06M031555 GC06M031573 GC06M031962 GC06M031965 GC06M031970
GH06I031567 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.9 +36.1 36115 22.2 HDGF PKNOX1 SMAD1 MLX ZFP64 ARID4B SIN3A DMAP1 YBX1 ZNF2 TNF LST1 GC06P031585 GC06P031586 GC06P031587 GC06P031598 GC06P031599 GC06P031612 GC06P031613 GC06P031616
GH06I031614 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE 11.8 +73.5 73530 3.7 HDGF HDAC1 ELF3 FOXA2 IRF4 ZNF335 ZNF121 ATF7 ETV6 BCLAF1 AIF1 BAG6 LY6G5B HLA-DRB1 SKIV2L LY6G5C LST1 LTB C4A DDX39B
GH06I031486 Enhancer 0.2 Ensembl 11.5 -56.1 -56103 0.4 GC06M031422 PPIAP9 RPL15P4 MCCD1 SNORD117 DDX39B ATP6V1G2 DDX39B-AS1 SLC44A4 MICB
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for DDX39B-AS1 Gene

Genomic Locations for DDX39B-AS1 Gene
chr6:31,542,304-31,543,138
(GRCh38/hg38)
Size:
835 bases
Orientation:
Plus strand

Genomic View for DDX39B-AS1 Gene

Genes around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX39B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX39B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for DDX39B-AS1 Gene

Post-translational modifications for DDX39B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX39B-AS1 Gene

Domains & Families for DDX39B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DDX39B-AS1 Gene

Function for DDX39B-AS1 Gene

Phenotypes From GWAS Catalog for DDX39B-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX39B-AS1 Gene

Localization for DDX39B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DDX39B-AS1 Gene

Pathways & Interactions for DDX39B-AS1 Gene

SuperPathways for DDX39B-AS1 Gene

No Data Available

Interacting Proteins for DDX39B-AS1 Gene

Gene Ontology (GO) - Biological Process for DDX39B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DDX39B-AS1 Gene

Drugs & Compounds for DDX39B-AS1 Gene

No Compound Related Data Available

Transcripts for DDX39B-AS1 Gene

mRNA/cDNA for DDX39B-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for DDX39B-AS1 Gene

No ASD Table

Relevant External Links for DDX39B-AS1 Gene

GeneLoc Exon Structure for
DDX39B-AS1
ECgene alternative splicing isoforms for
DDX39B-AS1

Expression for DDX39B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DDX39B-AS1 Gene

genes like me logo Genes that share expression patterns with DDX39B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX39B-AS1 Gene

Orthologs for DDX39B-AS1 Gene

Evolution for DDX39B-AS1 Gene

ENSEMBL:
Gene Tree for DDX39B-AS1 (if available)
TreeFam:
Gene Tree for DDX39B-AS1 (if available)

No data available for Orthologs for DDX39B-AS1 Gene

Paralogs for DDX39B-AS1 Gene

No data available for Paralogs for DDX39B-AS1 Gene

Variants for DDX39B-AS1 Gene

Sequence variations from dbSNP and Humsavar for DDX39B-AS1 Gene

SNP ID Clin Chr 06 pos Variation AA Info Type
rs1000206682 -- 31,543,039(+) C/T non_coding_transcript_variant
rs1001076799 -- 31,543,436(+) C/G/T downstream_transcript_variant
rs1003091793 -- 31,541,666(+) T/C upstream_transcript_variant
rs1005744200 -- 31,542,507(+) T/A intron_variant
rs1005852001 -- 31,542,047(+) G/T upstream_transcript_variant

Additional Variant Information for DDX39B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX39B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DDX39B-AS1 Gene

Disorders for DDX39B-AS1 Gene

Additional Disease Information for DDX39B-AS1

No disorders were found for DDX39B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DDX39B-AS1 Gene

Publications for DDX39B-AS1 Gene

No publications were found for DDX39B-AS1 Gene.

Products for DDX39B-AS1 Gene

Sources for DDX39B-AS1 Gene

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