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Aliases for DDX39B-AS1 Gene

Subcategory (RNA class) for DDX39B-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DDX39B-AS1 Gene

  • DDX39B Antisense RNA 1 2 3 5
  • DDX39B Antisense RNA 1 (Non-Protein Coding) 2 3
  • XXbac-BPG296P20.15 3

External Ids for DDX39B-AS1 Gene

Previous GeneCards Identifiers for DDX39B-AS1 Gene

  • GC00U933577
  • GC06P031511

Summaries for DDX39B-AS1 Gene

GeneCards Summary for DDX39B-AS1 Gene

DDX39B-AS1 (DDX39B Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX39B-AS1 Gene

Genomics for DDX39B-AS1 Gene

Regulatory Elements for DDX39B-AS1 Gene

Enhancers for DDX39B-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH06G031567 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.9 +36.1 36115 22.2 CREB3L1 MLX AGO1 ZFP64 DMAP1 FEZF1 YBX1 YY1 SLC30A9 ZNF143 DDX39B TNF LY6G5B LSM2 DHX16 ATF6B TCF19 PPP1R10 VARS CSNK2B
GH06G031614 1.1 Ensembl ENCODE 11.8 +73.5 73531 3.7 HDAC1 ELF3 HDGF TBP ZNF121 RELB ETV6 IKZF2 CREM TBX21 BAG6 LY6G5B HLA-DRB1 SKIV2L LY6G5C LST1 LTB C4A DDX39B DDX39B-AS1
GH06G031486 0.2 Ensembl 11.5 -56.1 -56104 0.4 PPIAP9 MCCD1 RPL15P4 SNORD117 DDX39B ATP6V1G2 DDX39B-AS1 SLC44A4 GC06M031422 MICB
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DDX39B-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000195555 -404 2601 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YY1 ZNF143 ZNF263 SP3 TBX21

Genomic Location for DDX39B-AS1 Gene

Chromosome:
6
Start:
31,542,304 bp from pter
End:
31,543,138 bp from pter
Size:
835 bases
Orientation:
Plus strand

Genomic View for DDX39B-AS1 Gene

Genes around DDX39B-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX39B-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX39B-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

Proteins for DDX39B-AS1 Gene

Post-translational modifications for DDX39B-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX39B-AS1 Gene

Domains & Families for DDX39B-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DDX39B-AS1 Gene

Function for DDX39B-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX39B-AS1 Gene

Localization for DDX39B-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DDX39B-AS1 Gene

Pathways & Interactions for DDX39B-AS1 Gene

SuperPathways for DDX39B-AS1 Gene

No Data Available

Interacting Proteins for DDX39B-AS1 Gene

Gene Ontology (GO) - Biological Process for DDX39B-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DDX39B-AS1 Gene

Drugs & Compounds for DDX39B-AS1 Gene

No Compound Related Data Available

Transcripts for DDX39B-AS1 Gene

mRNA/cDNA for DDX39B-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DDX39B-AS1 Gene

No ASD Table

Relevant External Links for DDX39B-AS1 Gene

GeneLoc Exon Structure for
DDX39B-AS1
ECgene alternative splicing isoforms for
DDX39B-AS1

Expression for DDX39B-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for DDX39B-AS1 Gene

genes like me logo Genes that share expression patterns with DDX39B-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DDX39B-AS1 Gene

Orthologs for DDX39B-AS1 Gene

Evolution for DDX39B-AS1 Gene

ENSEMBL:
Gene Tree for DDX39B-AS1 (if available)
TreeFam:
Gene Tree for DDX39B-AS1 (if available)

No data available for Orthologs for DDX39B-AS1 Gene

Paralogs for DDX39B-AS1 Gene

No data available for Paralogs for DDX39B-AS1 Gene

Variants for DDX39B-AS1 Gene

Sequence variations from dbSNP and Humsavar for DDX39B-AS1 Gene

SNP ID Clin Chr 06 pos Sequence Context AA Info Type
rs1000206682 -- 31,543,039(+) TTTTC(C/T)TGAAT intron-variant, nc-transcript-variant, upstream-variant-2KB
rs1001076799 -- 31,543,436(+) AGTAT(C/G/T)ATTTA intron-variant, downstream-variant-500B, upstream-variant-2KB
rs1003091793 -- 31,541,666(+) TCTCA(C/T)TGATG intron-variant, upstream-variant-2KB
rs1005744200 -- 31,542,507(+) CTCTT(A/T)CCCAG intron-variant, upstream-variant-2KB
rs1005852001 -- 31,542,047(+) CTCCC(G/T)CCTTC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime

Relevant External Links for DDX39B-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX39B-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DDX39B-AS1 Gene

Disorders for DDX39B-AS1 Gene

Relevant External Links for DDX39B-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DDX39B-AS1

No disorders were found for DDX39B-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DDX39B-AS1 Gene

Publications for DDX39B-AS1 Gene

No publications were found for DDX39B-AS1 Gene.

Products for DDX39B-AS1 Gene

Sources for DDX39B-AS1 Gene

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