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Aliases for DDX11-AS1 Gene

Subcategory (RNA class) for DDX11-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DDX11-AS1 Gene

  • DDX11 Antisense RNA 1 2 3 5
  • DDX11 Antisense RNA 1 (Non-Protein Coding) 2 3
  • CONCR 3

External Ids for DDX11-AS1 Gene

Previous GeneCards Identifiers for DDX11-AS1 Gene

  • GC12M031175

Summaries for DDX11-AS1 Gene

GeneCards Summary for DDX11-AS1 Gene

DDX11-AS1 (DDX11 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DDX11-AS1 Gene

Genomics for DDX11-AS1 Gene

Regulatory Elements for DDX11-AS1 Gene

Enhancers for DDX11-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F032016 0.5 ENCODE 36.7 -943.4 -943357 2.2 ZFP64 ZEB1 ZNF138 ZNF366 ZNF202 ZNF680 SP3 ZNF654 REST TSHZ1 LOC100420981 DDX11-AS1 FAM60A YARS2 FLJ13224 BICD1 H3F3C ENSG00000243517 AMN1 ENSG00000257094
GH12F031889 0.9 Ensembl ENCODE 25.5 -817.0 -817046 1.9 PKNOX1 CBX3 ARNT ZFP64 ZNF140 CHAMP1 ZNF101 ZNF664 CBX5 ZNF143 LOC100420981 DDX11-AS1 BICD1 YARS2 KIAA1551 FAM60A LOC105369723 ENSG00000256465
GH12F031204 1 Ensembl ENCODE 15 -132.0 -132039 1.9 ZBTB11 ZNF140 TRIM22 ZNF518A ZNF781 RELA ZNF664 JUND IKZF1 FOS DDX11 BICD1 DDX11-AS1 IPO8 LINC00941 OVOS2 LOC101060058
GH12F032022 0.6 ENCODE 14.9 -948.8 -948786 1.2 BCOR MIER1 ZNF140 ZBTB33 REST LOC100420981 DDX11-AS1 AMN1 ENSG00000257094 ENSG00000257852
GH12F031118 0.5 Ensembl ENCODE 12.6 -45.1 -45054 1.4 ELF3 ATF1 ZNF76 KLF17 RAD21 ZNF2 ZEB1 GLIS2 ZNF207 CREM FAM60A IPO8 FLJ13224 DDX11-AS1 DDX11 GC12P031123 LOC101060058 PIR58939
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DDX11-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DDX11-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000428576 -53 2601 HDGF PKNOX1 CREB3L1 ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF263

Genomic Location for DDX11-AS1 Gene

Chromosome:
12
Start:
31,020,763 bp from pter
End:
31,073,847 bp from pter
Size:
53,085 bases
Orientation:
Minus strand

Genomic View for DDX11-AS1 Gene

Genes around DDX11-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DDX11-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DDX11-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DDX11-AS1 Gene

Proteins for DDX11-AS1 Gene

Post-translational modifications for DDX11-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DDX11-AS1 Gene

Domains & Families for DDX11-AS1 Gene

Gene Families for DDX11-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with DDX11-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DDX11-AS1 Gene

Function for DDX11-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DDX11-AS1 Gene

Localization for DDX11-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DDX11-AS1 Gene

Pathways & Interactions for DDX11-AS1 Gene

SuperPathways for DDX11-AS1 Gene

No Data Available

Interacting Proteins for DDX11-AS1 Gene

Gene Ontology (GO) - Biological Process for DDX11-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DDX11-AS1 Gene

Transcripts for DDX11-AS1 Gene

mRNA/cDNA for DDX11-AS1 Gene

(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DDX11-AS1 Gene

DDX11 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DDX11-AS1 Gene

No ASD Table

Relevant External Links for DDX11-AS1 Gene

GeneLoc Exon Structure for
DDX11-AS1
ECgene alternative splicing isoforms for
DDX11-AS1

Expression for DDX11-AS1 Gene

mRNA expression in normal human tissues for DDX11-AS1 Gene

SOURCE GeneReport for Unigene cluster for DDX11-AS1 Gene:

Hs.586774
genes like me logo Genes that share expression patterns with DDX11-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DDX11-AS1 Gene

Orthologs for DDX11-AS1 Gene

Evolution for DDX11-AS1 Gene

ENSEMBL:
Gene Tree for DDX11-AS1 (if available)
TreeFam:
Gene Tree for DDX11-AS1 (if available)

No data available for Orthologs for DDX11-AS1 Gene

Paralogs for DDX11-AS1 Gene

No data available for Paralogs for DDX11-AS1 Gene

Variants for DDX11-AS1 Gene

Sequence variations from dbSNP and Humsavar for DDX11-AS1 Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10711716 -- 31,042,691(+) TGCCT(-/G)TATTG intron-variant
rs10771793 -- 31,024,869(+) TCTAA(A/G)TCTTG intron-variant
rs10771794 -- 31,030,211(+) TGGAC(C/T)AGCTC intron-variant
rs10771795 -- 31,031,614(+) tctct(C/G)tgtgt intron-variant
rs10771796 -- 31,032,775(+) TAGAA(A/G)AGTAA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DDX11-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1417n100 CNV gain 25217958
dgv17n64 CNV gain 17921354
dgv192n27 CNV gain 19166990
dgv2463n54 CNV gain 21841781
dgv61e55 CNV gain 17911159
dgv62e55 CNV gain 17911159
dgv63e55 CNV gain 17911159
dgv7e196 CNV duplication 17116639
dgv8e196 CNV duplication 17116639
esv22975 CNV gain 19812545
esv2422283 CNV duplication 17116639
esv2422447 CNV duplication 17116639
esv2658025 CNV deletion 23128226
esv2751043 CNV gain 17911159
esv2751046 CNV gain 17911159
esv2759890 CNV gain+loss 17122850
esv3581161 CNV gain 25503493
esv3629033 CNV loss 21293372
esv3629035 CNV loss 21293372
nsv1038745 CNV gain 25217958
nsv1045497 CNV gain 25217958
nsv428276 CNV gain 18775914
nsv515974 CNV gain+loss 19592680
nsv558030 CNV gain 21841781
nsv659 CNV deletion 18451855
nsv832363 CNV gain 17160897
nsv8938 CNV gain 18304495
nsv973042 CNV duplication 23825009
nsv973043 CNV duplication 23825009
nsv973044 CNV duplication 23825009
nsv975469 CNV duplication 23825009

Relevant External Links for DDX11-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DDX11-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DDX11-AS1 Gene

Disorders for DDX11-AS1 Gene

Relevant External Links for DDX11-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DDX11-AS1

No disorders were found for DDX11-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DDX11-AS1 Gene

Publications for DDX11-AS1 Gene

  1. A Long Noncoding RNA Regulates Sister Chromatid Cohesion. (PMID: 27477908) Marchese F.P. … Huarte M. (Mol. Cell 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for DDX11-AS1 Gene

Sources for DDX11-AS1 Gene

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