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Aliases & Descriptions for DDIT3
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CEBPZ 2 | | CHOP 1, 2, 3 | | CHOP10 1, 2, 5 | | DDIT-3 3 | | GADD153 1, 2, 3, 5 | | MGC4154 2 |
| | | Descriptions |
|---|
| C/EBP homologous protein 2 | | C/EBP zeta 2 | | C/EBP-homologous protein 3 | | CCAAT/enhancer-binding protein homologous protein 2 | | DNA-damage-inducible transcript 3 2 | | Growth arrest and DNA-damage-inducible protein GADD153 3 | | growth arrest- and DNA damage-inducible 2 |
|
| | Search outside databases for aliases for DDIT3 genePrevious GC identifers: GC12M059181 GC12M058053 GC12M057627 |
Summaries for DDIT3(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| UniProtKB/Swiss-Prot: DDIT3_HUMAN, P35638Function: Inhibits the DNA-binding activity of C/EBP and LAP by forming heterodimers that cannot bind DNAGene Wiki entry for DDIT3 (DNA_damage-inducible_transcript_3) |
Genomic Location for DDIT3
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the DDIT3 gene 
Entrez Gene cytogenetic band: 12q13.1-q13.2 Ensembl cytogenetic band: 12q13.3 HGNC cytogenetic band: 12q13.1-q13.2DDIT3 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 12 GeneLoc Exon Structure GeneLoc location for GC12M056196:
(about GC identifiers)
Start:
|
56,196,638 bp from pter |
End:
|
56,200,567 bp from pter |
Size:
|
3,930 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000012.10 NT_029419.11
| Proteins for DDIT3
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: DDIT3_HUMAN, P35638 (See
protein sequence)Recommended Name: DNA damage-inducible transcript 3 Size: 169 amino acids; 19175 Da
Subunit: Heterodimer
Subcellular location: NucleusPost-translational modifications:
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004074.2
ENSEMBL proteins: ENSP00000340671
Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: DDIT3 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for DDIT3: Assays for DDIT3: | Protein
Domains/ Families for DDIT3(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P35638
ProtoNet protein and cluster: P35638 UniProtKB/Swiss-Prot: DDIT3_HUMAN, P35638Similarity: Belongs to the bZIP familySimilarity: Contains 1 bZIP domain | Gene Function for DDIT3
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004083
Applied Biosystems Silencer® siRNAs for DDIT3
Sigma-Aldrich siRNA for DDIT3  Sigma-Aldrich shRNA Panels and shRNA for DDIT3  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004083                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004083                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004083 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004083
UniProtKB/Swiss-Prot: DDIT3_HUMAN, P35638Function: Inhibits the DNA-binding activity of C/EBP and LAP by forming heterodimers that cannot bind DNAGenatlas biochemistry entry for DDIT3:DDIT3 dominant negative regulator of several C/EBP transcription factors,involved in t(12;16) translocation (see FUS),involved in erythroid growth and differentiation possibly through interaction with both C/EBP and non C/EBP family members5 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Ddit3):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for DDIT3
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for DDIT3 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for DDIT3 
5/60 Interacting proteins for DDIT3 (P356382 ENSP000003406713) via UniProtKB, MINT, and/or STRING (see all 60
)About this table
5/18 Gene Ontology (GO) biological process terms (links to tree view) (see all 18
): About this table
|
Drugs & Compounds for DDIT3(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for DDIT3 10/26 Novoseek chemical compound relationships for DDIT3 gene (see all 26
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| l-(4,5-3h)leucine |
72.55 |
1 |
11113529 (1) |
| pga2 |
64.23 |
12 |
1735464 (6), 7926370 (1) |
| sp 600125 |
48.01 |
6 |
15466475 (1), 15680548 (1), 18767967 (1), 19139269 (1) |
| deferoxamine mesylate |
45.66 |
2 |
14604972 (1) |
| oxygen |
31.66 |
19 |
12880976 (1), 16972258 (1), 17695528 (1), 9250393 (1) (see all 14) |
| asparagine |
28.79 |
3 |
17276738 (1), 10827209 (1), 12700400 (1) |
| leucine |
28.09 |
4 |
8125258 (1), 8510758 (1), 7987849 (1) |
| amino acid |
26.74 |
5 |
14630918 (5) |
| 1 methyl 4 phenylpyridinium |
24.03 |
2 |
14649730 (1), 17631803 (1) |
| bapta |
23.34 |
3 |
9365549 (2) |
About this table
|
Transcripts for DDIT3(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004083
Sigma-Aldrich siRNA for DDIT3  Sigma-Aldrich shRNA Panels and shRNA for DDIT3  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004083 REFSEQ mRNAs for DDIT3 gene: NM_004083.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004083               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004083                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004083                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004083  Additional cDNA sequence: BT006691.1 CR616853.1 12 DOTS entries: DT.91780645 DT.100045496 DT.97810576 DT.40306179 DT.95193903 DT.100687083 DT.121187388 DT.91780612 DT.40236699 DT.100687093 DT.121187409 DT.91780636 24/277 AceView cDNA sequences (see all 277
):BM823128 CD675012 BM830943 BM669449 BU664440 CB144081 BU664077 AW043601 CN482753 CR616853 BM830819 CD678684 BM823617 R51042 BM759769 BM831039 AA812094 BM977799 BU682572 AA128239 CN482428 BM823190 BQ694049 BU783563
highest scoring ESTs for DDIT3:AA476561 AJ712787 AJ712803 AV729744 AV751742 AV764496 BC003637 BE295222 BE299745 BE300044 Unigene Clusters for DDIT3: DNA-damage-inducible transcript 3 Hs.505777 [show with all ESTs], Hs.690217 [show with all ESTs]Unigene Representative Sequences: BC107859, BE299644
GeneLoc Exon Structure
5/8 Alternative Splicing Database (ASD) splice patterns (SP) for DDIT3 (see all 8
)
| ExUns: | 1a | · | 1b | ^ | 2a | · | 2b | ^ | 3a | · | 3b | · | 3c | · | 3d | · | 3e | · | 3f | ^ | 4a | · | 4b | · | 4c | · | 4d | · | 4e | |
| SP1: | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | - |   | |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP4: | |   | |   | - |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP5: | |   | |   | - |   | |   | - |   | - |   | - |   | - |   | - |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for DDIT3
1 Ensembl transcript including schematic representation: ENST00000346473
|
Expression for DDIT3
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| DDIT3 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for DDIT3
1 / 2 / 3 5 probe-sets matching DDIT3 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: --
SOURCE GeneReport for Unigene clusters: Hs.505777 Hs.690217
Expression variation in blood from EXPOLDB for DDIT3 |
Orthologs for DDIT3
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for DDIT3 gene from 4 species
About this table Species with no ortholog for DDIT3
ENSEMBL Gene Tree for DDIT3 | Paralogs for DDIT3(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for DDIT3(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for DDIT3 (up to first 250kb)
|
Disorders & Mutations for DDIT3
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 126337 UniProtKB/Swiss-Prot: DDIT3_HUMAN, P35638
A chromosomal aberration involving DDIT3 is found in a form of malignant myxoid liposarcoma [MIM:126337]. Translocation t(12;16)(q13;p11) with FUS10/35 Novoseek disease relationships for DDIT3 gene (see all 35
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| liposarcoma myxoid |
91.81 |
26 |
18162764 (3), 8143276 (2), 8637704 (2), 8510758 (2) (see all 17) |
| liposarcoma |
79.47 |
26 |
11126370 (2), 12168660 (2), 9676855 (1), 12169678 (1) (see all 16) |
| sarcoma |
45.80 |
8 |
18162764 (2), 7687873 (2), 8117620 (1), 10448063 (1) |
| cancer |
34.42 |
22 |
15322075 (3), 16463383 (2), 12138118 (2), 19276161 (1) (see all 12) |
| colon cancer |
33.27 |
5 |
18534616 (1), 15271854 (1), 16434966 (1), 17180111 (1) (see all 5) |
| tumors |
31.63 |
31 |
10430059 (4), 10803921 (3), 10534579 (2), 8117620 (2) (see all 20) |
| lipoma |
31.23 |
1 |
9244875 (1) |
| ewings sarcoma |
27.58 |
1 |
7493135 (1) |
| myeloma |
24.63 |
7 |
16572396 (4), 12402318 (1) |
| malignant fibrous histiocytoma |
24.49 |
1 |
8143276 (1) |
About this table
Genatlas disease: DDIT3 myxoid liposarcoma,with breakpoint in t(12;16) translocation (see FUS) Genetic Association Database: DDIT3 Human Genome Epidemiology Navigator: DDIT3 (3 documents)
|
Medical News for DDIT3(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for DDIT3 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/312 PubMed articles for DDIT3 gene (see all 312
):- Fusion of CHOP to a novel RNA-binding protein in human myxoid liposarcoma. (PubMed id 8510758)1, 3, 4 Crozat A.... Ron D. (1993)
- Induction by ionizing radiation of the gadd45 gene in cultured human cells: lack of mediation by protein kinase C. (PubMed id 1990262)1, 2, 3 Papathanasiou M.A.... Fornace A.J. Jr. (1991)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Fusion of the dominant negative transcription regulator CHOP with a novel gene FUS by translocation t(12;16) in malignant liposarcoma. (PubMed id 7503811)3, 4 Rabbitts T.H....Nathan P. (1993)
- Isolation, characterization and chromosomal localization of the human GADD153 gene. (PubMed id 1339368)3, 4 Park J.S.... Holbrook N.J. (1992)
- Critical and functional regulation of CHOP (C/EBP homologous protein) through the N-terminal portion. (PubMed id 17872950)1, 3 Ohoka N....Hayashi H. (2007)
- CHOP transcription factor phosphorylation by casein kinase 2 inhibits transcriptional activation. (PubMed id 12876286)1, 3 Ubeda M. and Habener J.F. (2003)
- GADD153 is an independent prognostic factor in melanoma: immunohistochemical and molecular genetic analysis. (PubMed id 12168790)1, 3 Korabiowska M....Brinck U. (2002)
- Green tea polyphenol stimulates cancer preventive effects of celecoxib in human lung cancer cells by upregulation of GADD153 gene. (PubMed id 16463383)1, 3 Suganuma M....Fujiki H. (2006)
- Increased GADD gene expression in human colon epithelial cells exposed to deoxycholate. (PubMed id 15316935)1, 3 Scott D.W....Loo G. (2005)
|
Search for DDIT3
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing DDIT3
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing DDIT3
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DDIT3(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for DDIT3(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for DDIT3:

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| Antibodies & Assays for DDIT3  (CHOP) |
| | | | Search Tocris compounds for DDIT3 |
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Incremental update: 13 Oct 2009
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