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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DCUN1D4 Gene

protein-coding   GIFtS: 50
GCID: GC04P052709

DCN1, defective in cullin neddylation 1, domain containing...

 Explore 2 diseases affiliated with
DCUN1D4 via our new
 Human Malady Compendium 
Biological research products
for DCUN1D4
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
DCN1, Defective In Cullin Neddylation 1, Domain Containing 4 (S.
Cerevisiae)1 2
KIAA02761 3 5
Defective In Cullin Neddylation Protein 1-Like Protein 42 3
DCUN1 Domain-Containing Protein 42 3
DCN1-Like Protein 42

External Ids:    HGNC: 289981   Entrez Gene: 231422   Ensembl: ENSG000001091847   OMIM: 6129775   UniProtKB: Q925643   

Export aliases for DCUN1D4 gene to outside databases

Previous GC identifers: GC04P052551 GC04P052404 GC04P048650


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for DCUN1D4


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NC_018915.1  NT_022853.15  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DCUN1D4 gene promoter:
         TBP   AhR   ATF-2   HSF1 (long)   Arnt   GATA-2   RORalpha1   Ik-2   HSF1short   ATF   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidDCUN1D4 promoter sequence
   Search SABiosciences Chromatin IP Primers for DCUN1D4

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCUN1D4


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4q12   Ensembl cytogenetic band:  4q12   HGNC cytogenetic band: 4q11

DCUN1D4 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DCUN1D4 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P052709:  view genomic region     (about GC identifiers)

Start:
52,709,166 bp from pter      End:
52,783,003 bp from pter
Size:
73,838 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: DCNL4_HUMAN, Q92564 (See protein sequence)
Recommended Name: DCN1-like protein 4  
Size: 292 amino acids; 34068 Da
Sequence caution: Sequence=BAA13405.1; Type=Erroneous initiation; Sequence=CAD97912.1; Type=Erroneous initiation;
Secondary accessions: Q7Z3F3 Q7Z6B8
Alternative splicing: 2 isoforms:  Q92564-1   Q92564-2   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for DCUN1D4: NX_Q92564

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q92564

  • DCUN1D4 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (2 alternative transcripts): 
    NP_001035492.1  NP_055930.2  

    ENSEMBL proteins: 
     ENSP00000425644   ENSP00000334625   ENSP00000370850   ENSP00000421127   ENSP00000425792  
     ENSP00000423808   ENSP00000424476   ENSP00000421699   ENSP00000426982   ENSP00000422711  
     ENSP00000426048   ENSP00000423794   ENSP00000389900   ENSP00000370846  

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    Uscn Proteins for DCUN1D4

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--
    GO:0005634nucleus ----


    DCUN1D4 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    DCUN1D4 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR005176 PONY_dom
     IPR014764 DCN-prot

    Graphical View of Domain Structure for InterPro Entry Q92564

    ProtoNet protein and cluster: Q92564

    UniProtKB/Swiss-Prot: DCNL4_HUMAN, Q92564
    Similarity: Contains 1 DCUN1 domain


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    miRNA
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    Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--


    DCUN1D4 for ontologies           About GeneDecksing


    3 GenomeRNAi human phenotypes for DCUN1D4:
     Increased gamma-H2AX phosphory  Increased number of cells in m  Metaphase cells 


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DCUN1D4

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for DCUN1D4 (Q925643 ENSP000003346254) via UniProtKB, MINT, STRING, and/or I2D
    InteractantInteraction Details
    GeneCardExternal ID(s)
    VAV2P527353, ENSP000003609164I2D: score=1 STRING: ENSP00000360916
    UBE2MENSP000002530234STRING: ENSP00000253023
    ELAVL1ENSP000003852694STRING: ENSP00000385269
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--


    DCUN1D4 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DCUN1D4
    Search CenterWatch for drugs/clinical trials and news about DCUN1D4 / DCNL4 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for DCUN1D4 gene (2 alternative transcripts): 
    NM_001040402.1  NM_015115.2  

    Unigene Cluster for DCUN1D4:

    DCN1, defective in cullin neddylation 1, domain containing 4 (S. cerevisiae)
    Hs.605388  [show with all ESTs]
    Unigene Representative Sequence: NM_001040402
    18/23 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 23):
    ENST00000509376 ENST00000511675 ENST00000334635(uc003gze.3 uc011bzn.2 uc011bzo.2)
    ENST00000381441(uc003gzf.3) ENST00000506673 ENST00000504113 ENST00000502930
    ENST00000507741 ENST00000513800 ENST00000477560(uc003gzg.3 uc003gzh.3)
    ENST00000509068 ENST00000505403 ENST00000504661 ENST00000504923 ENST00000510587
    ENST00000507659 ENST00000505634 ENST00000510808

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    hsa-miR-300 hsa-miR-15a hsa-miR-128 hsa-miR-4274 hsa-miR-200b hsa-miR-3148 hsa-miR-130b hsa-miR-374b*
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    Additional cDNA sequence: 

    AK027051.1 AK124346.1 AK294894.1 AK294896.1 BC015240.1 BC041702.1 BC053897.1 BX537944.1 
    BX640660.1 D87466.1 

    16 DOTS entries:

    DT.100726691  DT.445259  DT.91658198  DT.86854420  DT.101984033  DT.95317671  DT.216963  DT.91917580 
    DT.92011120  DT.97789117  DT.100709206  DT.100721365  DT.100821535  DT.121232849  DT.121232856  DT.97765242 

    24/209 AceView cDNA sequences (see all 209):

    BQ948950 AL700442 BX477958 AI625850 BQ675161 BU630784 BC053897 AW151544 
    CD300375 BC041702 AI087327 Z41823 BQ722438 AI434436 AW263041 AA719762 
    BM699002 CF264924 AU117686 CD677232 AA213653 CB118671 AA854727 BX642413 

    GeneLoc Exon Structure

    5/17 Alternative Splicing Database (ASD) splice patterns (SP) for DCUN1D4 (see all 17)    About this scheme

    ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b · 8c · 8d ^ 9 ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b · 12c ^ 13a · 13b ^ 14 ^ 15 ^ 16 ^ 17a ·
    SP1:                                            -     -                       -           -     -     -                                   -     -     -     -   
    SP2:                                            -     -                       -           -     -     -                                   -     -     -     -   
    SP3:                                                                                      -     -     -                                   -           -     -   
    SP4:                                            -     -                       -           -                                                                     
    SP5:                                                                                                                                      -     -     -     -   

    ExUns: 17b · 17c ^ 18 ^ 19a · 19b · 19c · 19d · 19e ^ 20
    SP1:                                                      
    SP2:  -     -                                             
    SP3:                                                      
    SP4:                                                      
    SP5:                                                      


    ECgene alternative splicing isoforms for DCUN1D4

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DCUN1D4 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AATAAAAAGT

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image

    DCUN1D4 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    EyeRetinaEye
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See DCUN1D4 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DCUN1D4

    SOURCE GeneReport for Unigene cluster: Hs.605388
        SABiosciences Custom PCR Arrays for DCUN1D4
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCUN1D4

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for DCUN1D4 gene from 7/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dcun1d41 , 5 DCN1, defective in cullin neddylation 1, domain containing more1, 5 92.01(n)1
    96.58(a)1
      5 (38.85 cM)5
    1007371  NM_178896.51  NP_849227.11 
     734810025 
    chicken
    (Gallus gallus)
    Aves DCUN1D41 DCN1, defective in cullin neddylation 1, domain containing more 87.67(n)
    94.18(a)
      422762  XM_420715.2  XP_420715.2 
    lizard
    (Anolis carolinensis)
    Reptilia DCUN1D46
    --
    89(a)
    1 ↔ 1
    GL343293.1(1182185-1198383)
    zebrafish
    (Danio rerio)
    Actinopterygii Dr.165052 Transcribed sequence with moderate similarity to protein more 78.19(n)    CF550505.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG65971 CG6597 59.11(n)
    64(a)
      40231  NM_001202210.2  NP_001189139.1 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons AT1G158606
    uncharacterized protein
    31(a)
    1 → many
    1(5454785-5457022)
    rice
    (Oryza sativa)
    Liliopsida --
    DCN1, putative, expressed
    30(a)
    1 → many
    8(21352670-21358025)


    ENSEMBL Gene Tree for DCUN1D4 (if available)
    TreeFam Gene Tree for DCUN1D4 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for DCUN1D4 gene
    DCUN1D52  DCUN1D12  DCUN1D32  DCUN1D22  
    5 SIMAP similar genes for DCUN1D4 using alignment to 12 protein entries:     DCNL4_HUMAN (see all proteins):
    RBMS2    DCUN1D5    DCUN1D2    DCUN1D1    SNRPF

    DCUN1D4 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
    Database of Genomic Variants (DGV): 1 variation for DCUN1D4
         1 CNV: 3494
    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DCUN1D4
    DNA2.0 Custom Variant and Variant Library Synthesis for DCUN1D4

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    DCUN1D4 for disorders           About GeneDecksing

    OMIM gene information: 612977    OMIM disorders: --

    2 diseases for DCUN1D4:    About MalaCards
    pancreatic cancer    pancreatitis


    Export disorders for DCUN1D4 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DCUN1D4 gene, integrated from 9 sources (see all 15):
    (articles sorted by number of sources associating them with DCUN1D4)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The conserved protein DCN-1/Dcn1p is required for cullin neddylation in C. elegans and S. cerevisiae. (PubMed id 15988528)1, 3 Kurz T....Peter M. (2005)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. Prediction of the coding sequences of unidentified human genes. VI. The coding sequences of 80 new genes (KIAA0201-KIAA0280) deduced by analysis of cDNA clones from cell line KG-1 and brain. (PubMed id 9039502)1, 2 Nagase T....Nomura N. (1996)
    4. N-terminal acetylation acts as an avidity enhancer within an interconnected multiprotein complex. (PubMed id 21940857)1 Scott D.C.... Schulman B.A. (2011)
    5. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    6. Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201)1 Abdelmohsen K....Gorospe M. (2009)
    7. Identification of multi-SH3 domain-containing protein interactome in pancreatic cancer: a yeast two-hybrid approach. (PubMed id 18654987)1 Thalappilly S....Dusetti N.J. (2008)
    8. The full-ORF clone resource of the German cDNA consortium. (PubMed id 17974005)2 Bechtel S.... Schupp I. (2007)
    9. The LIFEdb database in 2006. (PubMed id 16381901)1 Mehrle A....Wiemann S. (2006)
    10. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)

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    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23142 HGNC: 28998 AceView: KIAA0276 Ensembl:ENSG00000109184 euGenes: HUgn23142
    ECgene: DCUN1D4 H-InvDB: DCUN1D4

    (According to HUGE)
    About This Section
    HUGE: KIAA0276

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DCUN1D4 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for DCUN1D4 gene:
    Search GeneIP for patents involving DCUN1D4

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