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Aliases for DCST1-AS1 Gene

Subcategory (RNA class) for DCST1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DCST1-AS1 Gene

  • DCST1 Antisense RNA 1 2 3 5
  • RP11-307C12.11 3

External Ids for DCST1-AS1 Gene

Summaries for DCST1-AS1 Gene

GeneCards Summary for DCST1-AS1 Gene

DCST1-AS1 (DCST1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for DCST1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCST1-AS1 Gene

Genomics for DCST1-AS1 Gene

Regulatory Elements for DCST1-AS1 Gene

Enhancers for DCST1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01H155015 1.7 Ensembl ENCODE dbSUPER 12.2 +46.7 46677 3 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZBTB7B YY1 GON4L KIAA0907 UBAP2L ENSG00000271267 CLK2 MSTO1 LOC101928120 MSTO2P THBS3 PYGO2
GH01H155094 1.4 Ensembl ENCODE dbSUPER 11.1 -30.4 -30437 0 NFIB ARID4B KLF17 ZNF2 RAD21 ZEB1 RFX5 GLIS2 EGR1 ZNF143 EFNA1 ENSG00000251246 EFNA4 SLC50A1 KRTCAP2 MUC1 ENSG00000231064 MTX1 THBS3 TRIM46
GH01H155084 1.4 ENCODE dbSUPER 11 -21.3 -21287 2 HDGF PKNOX1 MLX ARNT ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 UBAP2L GON4L KRTCAP2 THBS3 ADAM15 DAP3 KIAA0907 EFNA1 SLC50A1 ENSG00000271267
GH01H154965 1.4 ENCODE dbSUPER 10.6 +91.9 91938 12 MLX ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF416 ZNF143 SP3 NFYC UBAP2L GON4L CLK2 YY1AP1 KIAA0907 THBS3 KRTCAP2 ENSG00000271267 SHC1 FLAD1
GH01H155132 1.4 ENCODE dbSUPER 10.5 -71.5 -71501 5 HDGF PKNOX1 FOXA2 MLX ARNT ARID4B SIN3A DMAP1 ZBTB7B YY1 GBAP1 UBAP2L GON4L SYT11 KIAA0907 ATP8B2 THBS3 ENSG00000231064 TRIM46 ASH1L
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DCST1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DCST1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000014020 -9 1201 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF121 ZNF766 GLIS2

Genomic Location for DCST1-AS1 Gene

Chromosome:
1
Start:
155,045,191 bp from pter
End:
155,063,991 bp from pter
Size:
18,801 bases
Orientation:
Minus strand

Genomic View for DCST1-AS1 Gene

Genes around DCST1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCST1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCST1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCST1-AS1 Gene

Proteins for DCST1-AS1 Gene

Post-translational modifications for DCST1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DCST1-AS1 Gene

Domains & Families for DCST1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DCST1-AS1 Gene

Function for DCST1-AS1 Gene

Phenotypes From GWAS Catalog for DCST1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DCST1-AS1 Gene

Localization for DCST1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for DCST1-AS1 Gene

Pathways & Interactions for DCST1-AS1 Gene

SuperPathways for DCST1-AS1 Gene

No Data Available

Interacting Proteins for DCST1-AS1 Gene

Gene Ontology (GO) - Biological Process for DCST1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DCST1-AS1 Gene

Drugs & Compounds for DCST1-AS1 Gene

No Compound Related Data Available

Transcripts for DCST1-AS1 Gene

mRNA/cDNA for DCST1-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for DCST1-AS1 Gene

No ASD Table

Relevant External Links for DCST1-AS1 Gene

GeneLoc Exon Structure for
DCST1-AS1
ECgene alternative splicing isoforms for
DCST1-AS1

Expression for DCST1-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for DCST1-AS1 Gene

Orthologs for DCST1-AS1 Gene

Evolution for DCST1-AS1 Gene

ENSEMBL:
Gene Tree for DCST1-AS1 (if available)
TreeFam:
Gene Tree for DCST1-AS1 (if available)

No data available for Orthologs for DCST1-AS1 Gene

Paralogs for DCST1-AS1 Gene

No data available for Paralogs for DCST1-AS1 Gene

Variants for DCST1-AS1 Gene

Sequence variations from dbSNP and Humsavar for DCST1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs483352774 Uncertain significance 155,061,444(+) GCCCC(A/C/G/T)CCTTC intron-variant, nc-transcript-variant, reference, synonymous-codon, missense
rs1000321813 -- 155,054,090(+) AGGCT(C/T)CTCAG intron-variant
rs1000322784 -- 155,053,786(+) TCAGG(A/G)GTGGA intron-variant
rs1000552011 -- 155,046,301(+) AGAGA(A/G)TGCTC intron-variant
rs1000779022 -- 155,048,397(+) AGCGA(A/T)TATCC intron-variant

Relevant External Links for DCST1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DCST1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DCST1-AS1 Gene

Disorders for DCST1-AS1 Gene

Relevant External Links for DCST1-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DCST1-AS1

No disorders were found for DCST1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DCST1-AS1 Gene

Publications for DCST1-AS1 Gene

  1. Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing. (PMID: 27835578) Li Y … He J (Oncotarget 2016) 2 3 60
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles RA … Easton DF (Nature genetics 2013) 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60

Products for DCST1-AS1 Gene

Sources for DCST1-AS1 Gene

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