Free for academic non-profit institutions. Other users need a Commercial license

Aliases for DCST1-AS1 Gene

Subcategory (RNA class) for DCST1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for DCST1-AS1 Gene

  • DCST1 Antisense RNA 1 2 3
  • RP11-307C12.11 3 5

External Ids for DCST1-AS1 Gene

Summaries for DCST1-AS1 Gene

GeneCards Summary for DCST1-AS1 Gene

DCST1-AS1 (DCST1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCST1-AS1 Gene

Genomics for DCST1-AS1 Gene

Regulatory Elements for DCST1-AS1 Gene

Enhancers for DCST1-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F155022 1.1 Ensembl ENCODE 12.5 +41.1 41084 1.4 BMI1 RAD21 ZNF121 ZNF362 CEBPB ZEB2 REST SMARCA4 MYNN IKZF1 ZBTB7B ADAM15 DCST1-AS1 DCST2 FLAD1 PYGO2 UBE2Q1 CHRNB2
GH01F155015 1.1 Ensembl ENCODE 12.2 +46.1 46135 4.3 HDGF PKNOX1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 KIAA0907 ENSG00000271267 MSTO2P LOC101928120 PYGO2 THBS3 ASH1L-AS1 RUSC1-AS1 ADAM15 ZBTB7B
GH01F155010 0.2 ENCODE 11.6 +51.7 51681 4.3 HDGF PKNOX1 ARNT MLX CREB3L1 ARID4B SIN3A DMAP1 ZNF2 YY1 KIAA0907 ZBTB7B LOC101928120 FLAD1 ADAM15 DCST1-AS1 PYGO2 MIR92B EFNA4 ENSG00000251246
GH01F154994 0.9 Ensembl ENCODE 11.1 +68.6 68591 1.6 BCOR CTCF ZNF384 BMI1 ZIC2 RAD21 TEAD3 ZNF316 POLR2A HSF1 PYGO2 SHC1 ADAM15 DCST1-AS1 EFNA4 ENSG00000251246 EFNA3 CHRNB2 UBE2Q1 KRTCAP2
GH01F155084 0.2 ENCODE 11 -21.3 -21287 2.5 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 ADAM15 ASH1L PYGO2 EFNA1 SLC50A1 KRTCAP2 MIR92B MUC1 MTX1 THBS3
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DCST1-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for DCST1-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001586778 -9 1601 HDGF PKNOX1 CREB3L1 ARID4B SIN3A FEZF1 ZNF48 ZNF2 ZNF121 GLIS2

Genomic Location for DCST1-AS1 Gene

Chromosome:
1
Start:
155,045,191 bp from pter
End:
155,063,991 bp from pter
Size:
18,801 bases
Orientation:
Minus strand

Genomic View for DCST1-AS1 Gene

Genes around DCST1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCST1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCST1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCST1-AS1 Gene

Proteins for DCST1-AS1 Gene

Post-translational modifications for DCST1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DCST1-AS1 Gene

Domains & Families for DCST1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DCST1-AS1 Gene

Function for DCST1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DCST1-AS1 Gene

Localization for DCST1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DCST1-AS1 Gene

Pathways & Interactions for DCST1-AS1 Gene

SuperPathways for DCST1-AS1 Gene

No Data Available

Interacting Proteins for DCST1-AS1 Gene

Gene Ontology (GO) - Biological Process for DCST1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DCST1-AS1 Gene

Transcripts for DCST1-AS1 Gene

mRNA/cDNA for DCST1-AS1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DCST1-AS1 Gene

Uncharacterized LOC100505666:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DCST1-AS1 Gene

No ASD Table

Relevant External Links for DCST1-AS1 Gene

GeneLoc Exon Structure for
DCST1-AS1
ECgene alternative splicing isoforms for
DCST1-AS1

Expression for DCST1-AS1 Gene

SOURCE GeneReport for Unigene cluster for DCST1-AS1 Gene:

Hs.657533
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DCST1-AS1 Gene

Orthologs for DCST1-AS1 Gene

Evolution for DCST1-AS1 Gene

ENSEMBL:
Gene Tree for DCST1-AS1 (if available)
TreeFam:
Gene Tree for DCST1-AS1 (if available)

No data available for Orthologs for DCST1-AS1 Gene

Paralogs for DCST1-AS1 Gene

No data available for Paralogs for DCST1-AS1 Gene

Variants for DCST1-AS1 Gene

Sequence variations from dbSNP and Humsavar for DCST1-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs483352774 Uncertain significance 155,061,444(+) GCCCC(A/C/G/T)CCTTC intron-variant, nc-transcript-variant, reference, synonymous-codon, missense
rs1002230 -- 155,063,753(+) ACTTT(A/G)TACCT intron-variant, utr-variant-5-prime
rs10158328 -- 155,055,287(+) gtggc(A/G)tgatc intron-variant
rs1048767 -- 155,045,445(-) GCATA(A/T)CTCCT intron-variant, nc-transcript-variant
rs1051908 -- 155,062,549(+) TTCAA(A/G)AGGCG intron-variant, nc-transcript-variant, upstream-variant-2KB, utr-variant-3-prime

Relevant External Links for DCST1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DCST1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for DCST1-AS1 Gene

Disorders for DCST1-AS1 Gene

No disorders were found for DCST1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for DCST1-AS1 Gene

Publications for DCST1-AS1 Gene

  1. Integrated bioinformatics analysis of chromatin regulator EZH2 in regulating mRNA and lncRNA expression by ChIP sequencing and RNA sequencing. (PMID: 27835578) Li Y. … He J. (Oncotarget 2016) 2 3 64
  2. Identification of 23 new prostate cancer susceptibility loci using the iCOGS custom genotyping array. (PMID: 23535732) Eeles R.A. … Easton D.F. (Nat. Genet. 2013) 3 64
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for DCST1-AS1 Gene

Sources for DCST1-AS1 Gene

Content
Loading form....