Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DCLRE1A Gene

protein-coding   GIFtS: 56
GCID: GC10M115584

DNA cross-link repair 1A

(Previous names: DNA cross-link repair 1A (PSO2 homolog, S. cerevisiae)...)
 Explore 4 diseases affiliated with
DCLRE1A via our new
 Human Malady Compendium 
Biological research products
for DCLRE1A
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
DNA Cross-Link Repair 1A1 2     SNM1 Homolog A2 3
SNM11 2 3 5     DNA Cross-Link Repair 1A (PSO2 Homolog, S. Cerevisiae)1
KIAA00861 3 5     DNA Cross-Link Repair 1A Protein2
SNM1A2 3 5     DNA-Crosslink Repair Gene SNM12
PSO21 2     HSNM1A1
HSNM11     

External Ids:    HGNC: 176601   Entrez Gene: 99372   Ensembl: ENSG000001989247   OMIM: 6096825   UniProtKB: Q6PJP83   

Export aliases for DCLRE1A gene to outside databases

Previous GC identifers: GC10M114501 GC10M114828 GC10M115725 GC10M115259 GC10M109221


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for DCLRE1A:
This gene encodes a conserved protein that is involved in the repair of DNA interstrand cross-links. DNA cross-links
suppress transcription, replication, and DNA segregation. The encoded protein is a regulator of the mitotic cell cycle
checkpoint. Alternative splicing results in multiple transcript variants. (provided by RefSeq, Nov 2012)

UniProtKB/Swiss-Prot: DCR1A_HUMAN, Q6PJP8
Function: May be required for DNA interstrand cross-link repair. Also required for checkpoint mediated cell cycle
arrest in early prophase in response to mitotic spindle poisons

Gene Wiki entry for DCLRE1A


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000010.10  NC_018921.1  NT_030059.13  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DCLRE1A gene promoter:
         E2F-4   E2F-3a   AML1a   p53   E2F-2   CREB   E2F   E2F-1   HSF2   ATF6   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmids (see all 2): DCLRE1A promoter sequence
   Search SABiosciences Chromatin IP Primers for DCLRE1A

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCLRE1A


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 10q25.1   Ensembl cytogenetic band:  10q25.3   HGNC cytogenetic band: 10q25.1

DCLRE1A Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DCLRE1A gene location

GeneLoc information about chromosome 10         GeneLoc Exon Structure

GeneLoc location for GC10M115584:  view genomic region     (about GC identifiers)

Start:
115,594,484 bp from pter      End:
115,614,142 bp from pter
Size:
19,659 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: DCR1A_HUMAN, Q6PJP8 (See protein sequence)
Recommended Name: DNA cross-link repair 1A protein  
Size: 1040 amino acids; 116400 Da
Subunit: Binds constitutively to TP53BP1. Binds CDC27, which is itself a component of the anaphase promoting complex
(APC). Binds PIAS1
Subcellular location: Nucleus. Note=In some cells it may be found in typically 1 or 2 discrete nuclear aggregates of
unknown function which also contain TP53BP1. Also found in multiple discrete nuclear foci which increase in number
following treatment with ionizing radiation or interstrand cross-linking agents. These foci overlap with those formed
by the MRN complex (composed of MRE11A, RAD50 and NBN) and BRCA1
Sequence caution: Sequence=BAA07646.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;
1 PDB 3D structure from and Proteopedia for DCLRE1A:
4B87 (3D)    
Secondary accessions: D3DRC1 Q14701 Q6P5Y3 Q6PKL4

Explore the universe of human proteins at neXtProt for DCLRE1A: NX_Q6PJP8

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q6PJP8

  • DCLRE1A Protein expression data from MOPED and PaxDb:    About this image 
    DCLRE1A Protein Expression
    REFSEQ proteins (2 alternative transcripts): 
    NP_001258745.1  NP_055696.3  

    ENSEMBL proteins: 
     ENSP00000358311   ENSP00000355185  

    Human Recombinant Protein Products for DCLRE1A: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Browse OriGene full length recombinant human proteins expressed in human HEK293 cells
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for DCLRE1A 
    GenScript Custom Purified and Recombinant Proteins Services for DCLRE1A
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for DCLRE1A

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IDA--
    GO:0005730nucleolus IDA--

    DCLRE1A for ontologies           About GeneDecksing



    DCLRE1A Antibody Products: 
    Browse EMD Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse R&D Systems for Antibodies
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for DCLRE1A 
    GenScript Custom Superior Antibodies Services for DCLRE1A
    Novus Biologicals DCLRE1A Antibodies
    Abcam antibodies for DCLRE1A 
    Uscn Antibodies for DCLRE1A
    ThermoFisher Antibodies for DCLRE1A

    Assay Products for DCLRE1A: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for DCLRE1A
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for DCLRE1A


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    DCLRE1A for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR011084 DRMBL
     IPR001279 Beta-lactamas-like

    Graphical View of Domain Structure for InterPro Entry Q6PJP8

    ProtoNet protein and cluster: Q6PJP8

    UniProtKB/Swiss-Prot: DCR1A_HUMAN, Q6PJP8
    Similarity: Belongs to the DNA repair metallo-beta-lactamase (DRMBL) family


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DCR1A_HUMAN, Q6PJP8
    Function: May be required for DNA interstrand cross-link repair. Also required for checkpoint mediated cell cycle
    arrest in early prophase in response to mitotic spindle poisons
    Induction: During mitosis. The mRNA encoding this protein contains an internal ribosome entry site (IRES) in its
    5'-UTR. This 5'-UTR generally suppresses translation while specifically promoting expression during mitosis, when
    cap-dependent translation may be impaired

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016787hydrolase activity IEA--
         
    DCLRE1A for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for DCLRE1A:
     Increased circadian period len  Synthetic lethal with Ras 

         5 MGI mutant phenotypes (inferred from 3 alleles(MGI details for Dclre1a):
     cellular  homeostasis/metabolism  immune system  mortality/aging  tumorigenesis 

    DCLRE1A for phenotypes           About GeneDecksing

    Animal Models:
         Mouse knock-outs for DCLRE1A: Dclre1atm1Remo Dclre1atm1Rleg Dclre1atm1Roka
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for DCLRE1A 

    miRNA
    Products:
        
    OriGene 3'-UTR Clone: DCLRE1A
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat DCLRE1A
    5 QIAGEN miScript miRNA Assays for microRNAs that regulate DCLRE1A:
    hsa-miR-3163 hsa-miR-133a hsa-miR-155 hsa-miR-590-3p hsa-miR-133b
    SwitchGear 3'UTR luciferase reporter plasmidDCLRE1A 3' UTR sequence
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DCLRE1A (see all 7)
    OriGene shRNA RFP: DCLRE1A
    OriGene siRNA: DCLRE1A
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DCLRE1A
    Sirion Biotech Custom design and validation of potent shRNA sequences against DCLRE1A 

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for DCLRE1A
    Sirion Biotech Customized adenovirus for overexpression of DCLRE1A 
    Sirion Biotech Customized adenovirus for potent knockdown of DCLRE1A

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DCLRE1A (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DCLRE1A (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: DCLRE1A (NM_014881)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for DCLRE1A
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCLRE1A 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for DCLRE1A
    Search LifeMap BioReagents cell lines for DCLRE1A
    Sirion Biotech Customized stable knockdown cell line services for DCLRE1A 
    Sirion Biotech Customized inducible knockdown cell line services for DCLRE1A
    Sirion Biotech Customized stable overexpressing cell line services for DCLRE1A
    Sirion Biotech Customized inducible overexpressing cell line services for DCLRE1A

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCLRE1A


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Chks in Checkpoint Regulation
    DNA Repair Mechanisms0.32

    1 Downloadable PowerPoint Slide of QIAGEN Pathway Central Maps for DCLRE1A
        DNA Repair Mechanisms


    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for DCLRE1A

    STRING Interaction Network Preview (showing 5 interactants - click image to see 7)

    5/7 Interacting proteins for DCLRE1A (Q6PJP83 ENSP000003551854) via UniProtKB, MINT, STRING, and/or I2D (see all 7)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    PIAS1O759253, ENSP000002496364I2D: score=2 STRING: ENSP00000249636
    ATMQ133153, ENSP000002786164I2D: score=1 STRING: ENSP00000278616
    TP53BP1Q128883, ENSP000003714754I2D: score=1 STRING: ENSP00000371475
    UBCENSP000003448184STRING: ENSP00000344818
    PCNAENSP000003684384STRING: ENSP00000368438
    About this table

    Gene Ontology (GO): 3 biological process terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006289nucleotide-excision repair IEA--
    GO:0007067mitosis IEA--
    GO:0051301cell division IEA--

    DCLRE1A for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DCLRE1A
    Search CenterWatch for drugs/clinical trials and news about DCLRE1A / DCR1A 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, Sirion Biotech, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for DCLRE1A gene (2 alternative transcripts): 
    NM_001271816.1  NM_014881.4  

    Unigene Cluster for DCLRE1A:

    DNA cross-link repair 1A
    Hs.1560  [show with all ESTs]
    Unigene Representative Sequence: NM_014881
    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000369305 ENST00000361384(uc001law.2) ENST00000476112

    miRNA
    Products:
         
    OriGene 3'-UTR Clone: DCLRE1A
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat DCLRE1A
    5 QIAGEN miScript miRNA Assays for microRNAs that regulate DCLRE1A:
    hsa-miR-3163 hsa-miR-133a hsa-miR-155 hsa-miR-590-3p hsa-miR-133b
    SwitchGear 3'UTR luciferase reporter plasmidDCLRE1A 3' UTR sequence
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DCLRE1A (see all 7)
    OriGene shRNA RFP: DCLRE1A
    OriGene siRNA: DCLRE1A
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DCLRE1A
    Sirion Biotech Custom design and validation of potent shRNA sequences against DCLRE1A 
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DCLRE1A (see all 4)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DCLRE1A (see all 2)
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector: DCLRE1A (NM_014881)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for DCLRE1A
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCLRE1A 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DCLRE1A
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat DCLRE1A
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DCLRE1A
      Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCLRE1A

    Additional cDNA sequence: 

    AK307187.1 BC013124.2 BC062582.1 D42045.1 

    3 DOTS entries:

    DT.213619  DT.100020107  DT.301063 

    24/83 AceView cDNA sequences (see all 83):

    AA630074 AI682192 NM_014881 BU623158 N46162 AA860577 AL043226 BM698798 
    CB130234 AL360205 D42045 BC013124 BM703845 AI681848 BC062582 CB146751 
    BE671341 AI679517 AL700451 AI695881 CA489699 AI962459 AI243372 BX433249 

    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for DCLRE1A    About this scheme

    ExUns: 1 ^ 2a · 2b ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
    SP1:                                                                              
    SP2:        -                                                                     


    ECgene alternative splicing isoforms for DCLRE1A

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DCLRE1A expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: GGCAGTTATA
    DCLRE1A Expression
    About this image

    DCLRE1A expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    LiverLiver LobulePerivenous HepatocytesLiver
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See DCLRE1A Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DCLRE1A

    SOURCE GeneReport for Unigene cluster: Hs.1560

    UniProtKB/Swiss-Prot: DCR1A_HUMAN, Q6PJP8
    Tissue specificity: Expressed in brain, heart, kidney, liver, pancreas, placenta and skeletal muscle

        SABiosciences Custom PCR Arrays for DCLRE1A
    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DCLRE1A
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat DCLRE1A
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DCLRE1A
    Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCLRE1A
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCLRE1A

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for DCLRE1A gene from 8/25 species (see all 25)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dclre1a1 , 5 DNA cross-link repair 1A, PSO2 homolog (S. cerevisiae)1, 5 73.29(n)1
    65.9(a)1
      19 (51.89 cM)5
    559471  NM_018831.41  NP_061301.31 
     565291615 
    chicken
    (Gallus gallus)
    Aves DCLRE1A1 DNA cross-link repair 1A 59.66(n)
    51.03(a)
      423902  NM_001008683.1  NP_001008683.1 
    lizard
    (Anolis carolinensis)
    Reptilia DCLRE1A6
    --
    42(a)
    1 ↔ 1
    GL343204.1(525444-544281)
    African clawed frog
    (Xenopus laevis)
    Amphibia Xl.256382 Xenopus laevis transcribed sequence with weak similarity more 73.73(n)    BU913862.1 
    zebrafish
    (Danio rerio)
    Actinopterygii wufc49f052 Transcribed sequence with weak similarity to protein more 80.28(n)    BM777630.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta Snm13 DNA repair 37(a)   83B1   --
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons SNM11 DNA cross-link repair protein SNM1 51.87(n)
    47.26(a)
      822280  NM_113579.2  NP_189302.1 
    rice
    (Oryza sativa)
    Liliopsida Os04g04018001 hypothetical protein 48.41(n)
    44.09(a)
      4335730  NM_001059225.1  NP_001052690.1 


    ENSEMBL Gene Tree for DCLRE1A (if available)
    TreeFam Gene Tree for DCLRE1A (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for DCLRE1A gene
    DCLRE1B2  DCLRE1C2  

    DCLRE1A for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/407 NCBI SNPs in DCLRE1A are shown (see all 407    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 10 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs172289321,2
    C,F--115593993(-) GTGACAA/-GAGAT 1 -- ds50011Minor allele frequency- -:0.01NS 168
    rs1893674141,2
    --115594092(+) TCTACC/TCAACT 1 -- ds50010--------
    rs1813071281,2
    --115594141(+) TGGGCC/TGGGTG 1 -- ds50010--------
    rs172289181,2
    C,F,H--115594147(-) CCACCG/ACACCC 1 -- ds50014Minor allele frequency- A:0.14NS NA 456
    rs172353391,2
    C,F--115594229(-) TGTTGG/ACCAGG 1 -- ds50011Minor allele frequency- A:0.02NS 176
    rs1418962371,2
    --115594362(+) GGAGGC/TTGCAG 1 -- ds50010--------
    rs1472698411,2
    --115594384(+) ACTACA/GGCCCA 1 -- ds50010--------
    rs1849241391,2
    --115594516(+) ATACAC/TGTCAT 1 -- ut310--------
    rs172353251,2
    C--115594589(-) TTAATA/GAAGTA 1 -- ut311Minor allele frequency- G:0.01NS 172
    rs1407606881,2
    --115594637(+) CTTCCC/TCTTCT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for DCLRE1A (115594484 - 115614142 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for DCLRE1A: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DCLRE1A
    DNA2.0 Custom Variant and Variant Library Synthesis for DCLRE1A

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    DCLRE1A for disorders           About GeneDecksing

    OMIM gene information: 609682    OMIM disorders: --

    4 diseases for DCLRE1A:    About MalaCards
    alzheimer's disease    lung carcinoma    carcinoma    malaria

    1 disease from the University of Copenhagen DISEASES database for DCLRE1A:
    Fanconi's anemia
    Human Genome Epidemiology (HuGE) Navigator: DCLRE1A (2 documents)

    Export disorders for DCLRE1A gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DCLRE1A gene, integrated from 9 sources (see all 27):
    (articles sorted by number of sources associating them with DCLRE1A)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Disruption of mouse SNM1 causes increased sensitivity to the DNA interstrand cross-linking agent mitomycin C. (PubMed id 10848582)1, 2, 9 Dronkert M.L.G.... Kanaar R. (2000)
    2. Genomic organization of a potential human DNA-crosslink repair gene, KIAA0086. (PubMed id 9806498)1, 3, 9 Demuth I. and Digweed M. (1998)
    3. The hSNM1 protein is a DNA 5'-exonuclease. (PubMed id 17804464)1, 3, 9 Hejna J....Moses R. (2007)
    4. hSnm1 colocalizes and physically associates with 53BP1 before and after DNA damage. (PubMed id 12446782)1, 2, 9 Richie C.T....Legerski R.J. (2002)
    5. DNA cross-link repair protein SNM1A interacts with PIAS1 in nuclear focus formation. (PubMed id 15572677)1, 2 Ishiai M....Takata M. (2004)
    6. Deficiency in SNM1 abolishes an early mitotic checkpoint induced by spindle stress. (PubMed id 15542852)1, 2 Akhter S.... Legerski R.J. (2004)
    7. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    8. The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)1, 2 Deloukas P.... Rogers J. (2004)
    9. Translation of hSNM1 is mediated by an internal ribosome entry site that upregulates expression during mitosis. (PubMed id 12509242)1, 2 Zhang X.... Legerski R.J. (2002)
    10. Prediction of the coding sequences of unidentified human genes. III. The coding sequences of 40 new genes (KIAA0081-KIAA0120) deduced by analysis of cDNA clones from human cell line KG-1. (PubMed id 7788527)1, 2 Nagase T....Kotani H. (1995)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 9937 HGNC: 17660 AceView: DCLRE1A Ensembl:ENSG00000198924 euGenes: HUgn9937
    ECgene: DCLRE1A H-InvDB: DCLRE1A

    (According to HUGE)
    About This Section
    HUGE: KIAA0086

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DCLRE1A Pharmacogenomics, SNPs, Pathways
    ATLAS Chromosomes in Cancer entry for DCLRE1A Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/dclre1a/

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for DCLRE1A gene:
    Search GeneIP for patents involving DCLRE1A

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Browse Antibodies   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   OriGene shRNA RFP for DCLRE1A  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DCLRE1A   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DCLRE1A  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for DCLRE1A   OriGene 3'-UTR Clone for DCLRE1A  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DCLRE1A   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DCLRE1A  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     Browse OriGene full length recombinant human proteins expressed in human HEK293 cells   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for DCLRE1A   OriGene Custom Protein Services for DCLRE1A  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DCLRE1A
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DCLRE1A
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCLRE1A
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DCLRE1A
     Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCLRE1A
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DCLRE1A
     GenScript Custom Purified and Recombinant Proteins Services for DCLRE1A GenScript cDNA clones with any tag delivered in your preferred vector for DCLRE1A
     GenScript Custom Assay Services for DCLRE1A GenScript Custom Superior Antibodies Services for DCLRE1A
     GenScript Custom overexpressing Cell Line Services for DCLRE1A CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in DCLRE1A promoter
     Search Chromatin IP Primers for DCLRE1A
     RT2 qPCR Primer Assay in human, mouse, rat DCLRE1A
     GNC Network for DCLRE1A
     SABiosciences PCR Arrays including human, mouse, rat DCLRE1A
     Search Tocris compounds for DCLRE1A
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     DCLRE1A antibodies
     Antibodies for DCLRE1A
     See all of Abcam's Antibodies, Kits and Proteins for DCLRE1A
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     DCLRE1A Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for DCLRE1A
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCLRE1A
     SwitchGear 3'UTR luciferase reporter plasmids for DCLRE1A
     SwitchGear Promoter luciferase reporter plasmids for DCLRE1A
     ThermoFisher Antibodies for DCLRE1A
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCLRE1A
     inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for DCLRE1A
    Sirion Biotech Customized:
     stable knockdown cell line services for DCLRE1A
     inducible knockdown cell line services for DCLRE1A
     design and validation of potent shRNA sequences against DCLRE1A
     adenovirus for potent knockdown of DCLRE1A
     adenovirus for overexpression of DCLRE1A
     stable overexpressing cell line services for DCLRE1A
     inducible overexpressing cell line services for DCLRE1A
           
    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      DCLRE1A gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 106 solr: 1.4