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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DCLK3 Gene

protein-coding   GIFtS: 44
GCID: GC03M036731

doublecortin-like kinase 3

(Previous name: doublecortin and CaM kinase-like 3 )
(Previous symbol: DCAMKL3)
 Explore 1 disease affiliated with
DCLK3 via
MalaCards
our new
 Human Malady Compendium 
Biological research products
for DCLK3    

Aliases
for DCLK3 gene

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section
Aliases
Doublecortin-Like Kinase 31 2 3     EC 2.7.11.13 8
DCAMKL31 2 3     CLR2 5
DCDC3C1 2 3     DCK32 5
Doublecortin And CaM Kinase-Like 31 2     CLICK-I,II-Related1
KIAA17651 3     Serine/Threonine-Protein Kinase DCLK32
Doublecortin Domain-Containing Protein 3C2 3     EC 2.7.118
Doublecortin-Like And CAM Kinase-Like 32 3     

External Ids:    HGNC: 190051   Entrez Gene: 854432   Ensembl: ENSG000001636737   OMIM: 6131675   UniProtKB: Q9C0983   

Export aliases for DCLK3 gene to outside databases


Summaries
for DCLK3 gene

(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section
  --

Genomic Views
for DCLK3 gene

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000003.11  NC_018914.1  NT_022517.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DCLK3 gene promoter:
         GR   Elk-1   AML1a   GR-beta   Pax-2   Pax-2a   Evi-1   Pax-2b   GR-alpha   Ik-1   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for DCLK3

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCLK3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 3p22.2   Ensembl cytogenetic band:  3p22.2   HGNC cytogenetic band: 3p22.3

DCLK3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DCLK3 gene location

GeneLoc information about chromosome 3         GeneLoc Exon Structure

GeneLoc location for GC03M036731:  view genomic region     (about GC identifiers)

Start:
 36,753,913 bp from pter      End:
 36,781,352 bp from pter
Size:
 27,440 bases      Orientation:
 minus strand

Proteins
for DCLK3 gene

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section
UniProtKB/Swiss-Prot: DCLK3_HUMAN, Q9C098 (See protein sequence)
Recommended Name: Serine/threonine-protein kinase DCLK3  
Size: 648 amino acids; 73814 Da
Subcellular location: Cytoplasm (By similarity). Nucleus (By similarity)

Explore the universe of human proteins at neXtProt for DCLK3: NX_Q9C098

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q9C098

    • 4/8 DME Specific Peptides for DCLK3 (Q9C098) (see all 8)
     GVILYIL  LADFGLA  VHRDLKP  QVLQHPW 

    DCLK3 Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins: NP_208382.1  
    ENSEMBL proteins: 
     ENSP00000394484  

    Human Recombinant Protein Products: 
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    Novus Biologicals DCLK3 Proteins
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for DCLK3

    Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634nucleus IEA--
    GO:0005737cytoplasm IEA--


    DCLK3 for ontologies           About GeneDecksing



    DCLK3 Antibody Products: 
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    Uscn Antibodies for DCLK3
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    Uscn ELISAs and CLIAs for DCLK3

    Protein Domains /
    Families
    for DCLK3 gene

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    DCLK3 for domains           About GeneDecksing

    5/6 InterPro domains/families (see all 6):
     IPR017441 Protein_kinase_ATP_BS
     IPR002290 Ser/Thr_dual-sp_kinase_dom
     IPR011009 Kinase-like_dom
     IPR008271 Ser/Thr_kinase_AS
     IPR000719 Prot_kinase_cat_dom

    Graphical View of Domain Structure for InterPro Entry Q9C098

    ProtoNet protein and cluster: Q9C098

    UniProtKB/Swiss-Prot: DCLK3_HUMAN, Q9C098
    Similarity: Belongs to the protein kinase superfamily. CAMK Ser/Thr protein kinase family. CaMK subfamily
    Similarity: Contains 1 protein kinase domain


    Function
    for DCLK3 gene

    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section
    Function Summary:

         UniProtKB/Swiss-Prot: DCLK3_HUMAN, Q9C098
    Catalytic activity: ATP + a protein = ADP + a phosphoprotein

    Enzyme Numbers (IUBMB): EC 2.7.11.11 2 EC 2.7.112

    miRNA
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    8/23 QIAGEN miScript miRNA Assays for microRNAs that regulate DCLK3 (see all 23):
    hsa-miR-623 hsa-miR-1226 hsa-miR-300 hsa-miR-3660 hsa-miR-29a hsa-miR-29c hsa-miR-216b hsa-miR-3162-5p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DCLK3 (see all 4)
    OriGene shRNA RFP: DCLK3
    OriGene siRNA: DCLK3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DCLK3

    Gene Editing
    Products:    		DNA2.0 Custom Protein Engineering Service for DCLK3

    Clone
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    Cell Line
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    Search LifeMap BioReagents cell lines for DCLK3

    In Situ Assay
    Products:       
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    Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0004674protein serine/threonine kinase activity IEA--
    GO:0005524ATP binding IEA--


    DCLK3 for ontologies           About GeneDecksing


    2 GenomeRNAi human phenotypes for DCLK3:
     Increased cell death HMECs cel  Synthetic lethal with Ras 


    Pathways & Interactions
    for DCLK3 gene

    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DCLK3

    Drugs & Compounds
    for DCLK3 gene

    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DCLK3
    Search CenterWatch for drugs/clinical trials and news about DCLK3 

    Transcripts
    for DCLK3 gene

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section
    REFSEQ mRNAs for DCLK3 gene: 
    NM_033403.1  

    Unigene Cluster for DCLK3:

    Doublecortin-like kinase 3
    Hs.631907  [show with all ESTs]
    Unigene Representative Sequence: NM_033403
    2 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000416516(uc003cgi.2) ENST00000498047

    miRNA
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    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat DCLK3
    8/23 QIAGEN miScript miRNA Assays for microRNAs that regulate DCLK3 (see all 23):
    hsa-miR-623 hsa-miR-1226 hsa-miR-300 hsa-miR-3660 hsa-miR-29a hsa-miR-29c hsa-miR-216b hsa-miR-3162-5p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:             		Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for DCLK3 (see all 4)
    OriGene shRNA RFP: DCLK3
    OriGene siRNA: DCLK3
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DCLK3
    Clone
    Products:             		 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for DCLK3 (see all 3)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DCLK3 (see all 3)
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    GenScript: all cDNA clones in your preferred vector: DCLK3 (NM_033403)
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    Primer
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      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCLK3

    Additional cDNA sequence: 

    AB051552.1 AK122988.1 

    1 DOTS entry:

    DT.40204529 

    1 AceView cDNA sequence:

    BG292531 

    GeneLoc Exon Structure


    Expression
    for DCLK3 gene

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DCLK3 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)
    About this image

    DCLK3 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table
    1 LifeMap In Vivo Development Anatomical Compartment/Cell 
    Tissue Anatomical Compartment CellCategory (developmental path)
    BoneZeugopod Growth PlateBone
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization
    Stem Cell Differentiation: 1 LifeMap Cell 
    NameCategory
    Definitive endoderm-like cells (A scalable, suspensi...)

    See DCLK3 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DCLK3

    SOURCE GeneReport for Unigene cluster: Hs.631907
        SABiosciences Custom PCR Arrays for DCLK3
    Primer
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    In Situ
    Assay Products:     
         		Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCLK3

    Orthologs
    for DCLK3 gene

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section
    This gene was present in the common ancestor of eukaryotes.

    Orthologs for DCLK3 gene from 6/23 species (see all 23)    About this table
    Organism Taxonomic
    classification    		 Gene Description Human
    Similarity    		 Orthology
    Type    		 Details
    chicken
    (Gallus gallus)    		 Aves DCLK31 doublecortin-like kinase 3 61.82(n)
    54.12(a)    		   776499  XM_001236016.2  XP_001236017.2 
    lizard
    (Anolis carolinensis)    		 Reptilia DCLK36
    		 --
    		 49(a)
    		 1 ↔ 1
    		 6(43423765-43429967)
    zebrafish
    (Danio rerio)    		 Actinopterygii dclk36
    		 doublecortin-like kinase 3
    		 33(a)
    		 1 ↔ 1
    		 19(44541645-44548860)
    fruit fly
    (Drosophila melanogaster)    		 Insecta CG175286
    		 --
    		 19(a)
    		 1 → many
    		 2R(704674-711821)
    worm
    (Caenorhabditis elegans)    		 Secernentea F32D8.11 Protein F32D8.1 49.81(n)
    42.02(a)    		   185203  NM_073369.3  NP_505770.3 
    rice
    (Oryza sativa)    		 Liliopsida AK105102.12   -- 76.27(n)    AK105102.1 


    ENSEMBL Gene Tree for DCLK3 (if available)
    TreeFam Gene Tree for DCLK3 (if available) 

    Paralogs
    for DCLK3 gene

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for DCLK3 gene
    PNCK2  CAMK1G2  PSKH22  DCX2  DCLK22  CAMK2A2  CAMK1D2  DCLK12  
    PSKH12  CAMK42  CAMK2D2  CAMKV2  CAMK2G2  CAMK2B2  CAMK12  
    18/58 SIMAP similar genes for DCLK3 using alignment to 1 protein entry:     DCLK3_HUMAN(see all similar genes):
    DCLK1    RPS6KA1    DCLK2    MGC45428    CAMK1G    CAMK1
    KIN27    RPS6KA3    CAMK2G    CAMK1D    CAMK2A    CAMK4
    CAMK2D    PRKACB    DAPK3    MARK4    PNCK    PRKAA1

    DCLK3 for paralogs           About GeneDecksing



    Genomic Variants
    for DCLK3 gene

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/496 NCBI SNPs in DCLK3 are shown (see all 496)     About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance    		Chr 3 posSequence#AA
    Chg    		TypeMore#Allele
    freq    		PopTotal
    sample    		More
    ----------
    rs795924911,2
    		--36753599(+) GAGGTA/GTCAAG 1 -- ds50010--------
    rs1130807571,2
    		--36753644(+) CCATTC/TCCTGA 1 -- ds50012Minor allele frequency- T:0.03CSA WA 120
    rs738244601,2
    		C,--36753683(+) TTGGAG/AGTGAT 1 -- ds50012Minor allele frequency- A:0.09WA 120
    rs1168130381,2
    		--36753688(+) GGTGAT/CAATTG 1 -- ds50011Minor allele frequency- C:0.01WA 118
    rs1869530391,2
    		--36753808(+) GGGCAA/GGGAAG 1 -- ds50010--------
    rs1890697171,2
    		--36753810(+) GCAGGA/GAAGGA 1 -- ds50010--------
    rs1813786311,2
    		--36753869(+) AAATAA/GAGTGA 1 -- ds50010--------
    rs98344941,2
    		C,F,A,--36753988(+) GGTAAG/ATTTTG 1 -- ut31 ese33Minor allele frequency- A:0.43WA CSA 122
    rs1855574971,2
    		--36754193(+) CAAAAG/TGTAGT 1 -- ut310--------
    rs1899272391,2
    		--36754274(+) ATCCCC/TTTTTT 1 -- ut310--------

    HapMap Linkage Disequilibrium report for DCLK3 (36753913 - 36781352 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for DCLK3: --

    SABiosciences Cancer Mutation PCR Assays
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    Disorders / Diseases
    for DCLK3 gene

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
    DCLK3 for disorders           About GeneDecksing

    OMIM gene information: 613167    OMIM disorders: --

    1 disease for DCLK3:    About MalaCards
    pituitary tumor

    Human Genome Epidemiology (HuGE) Navigator: DCLK3 (1 document)

    Export disorders for DCLK3 gene to outside databases

    Publications
    for DCLK3 gene

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DCLK3 gene integrated from 9 sources:
    (articles sorted by number of sources associating them with DCLK3)    		    Utopia: connect your pdf to the dynamic
    world of online information

    1. Prediction of the coding sequences of unidentified human genes. XIX. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 11214970)1, 2, 3 Nagase T.... Ohara O. (2000)
    2. The evolving doublecortin (DCX) superfamily. (PubMed id 16869982)1, 3 Reiner O....Bergmann S. (2006)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    5. The doublecortin gene family and disorders of neurona l structure. (PubMed id 20236041)1 Dijkmans T.F....Vreugdenhil E. (2010)
    6. Patterns of somatic mutation in human cancer genomes. (PubMed id 17344846)2 Greenman C.... Stratton M.R. (2007)
    7. A diagnostic marker set for invasion, proliferation, and aggressiveness of prolactin pituitary tumors. (PubMed id 17914117)1 Wierinckx A....Trouillas J. (2007)
    8. Molecular identification and characterization of a fa mily of kinases with homology to Ca2+/calmodulin-dependent protein kinases I/IV . (PubMed id 16684769)1 Ohmae S....Bito H. (2006)
    9. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560)1 Kimura K.... Sugano S. (2006)
    10. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (2001)

    External Searches for DCLK3 gene

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  
      Query String
    		PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    Genome Databases showing DCLK3 gene

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 85443 HGNC: 19005 AceView: KIAA1765.1 Ensembl:ENSG00000163673 euGenes: HUgn85443
    ECgene: DCLK3 H-InvDB: DCLK3

    Other Databases showing DCLK3 gene

    (According to HUGE)
    About This Section
    HUGE: KIAA1765

    Specialized Databases showing DCLK3 gene

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DCLK3 Pharmacogenomics, SNPs, Pathways

    Intellectual Property
    for DCLK3 gene

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    		Patent Information for DCLK3 gene:
    Search GeneIP for patents involving DCLK3

    GeneCards and IP:
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    In Situ Hybridization Assays from
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