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DCHS1 Gene

protein-coding GIFtS: 47

GC11M006599

dachsous 1 (Drosophila)
(Previous name: protocadherin 16 )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
(Previous symbols: CDH25, PCDH16)

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
CDH19 ^³
CDH25 ^², ³
Cadherin-19 ^³
Cadherin-25 ^³
FIB1 ^¹, ², ³
FLJ11790 ^¹, ²
KIAA1773 ^¹, ², ³
PCDH16 ^², ³

Descriptions
Fibroblast cadherin-1 ^³
Protein dachsous homolog 1 ^³
dachsous 1 ^²
dachsous 1 (Drosophila) ^²
fibroblast cadherin 1 ^²
fibroblast cadherin FIB1 ^²
protocadherin 16 ^¹, ²

External Ids
HGNC: 13681¹
Entrez Gene: 8642²
UniProtKB: Q96JQ0³
Ensembl: ENSG00000166341⁷

Search outside databases for aliases for DCHS1 gene

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for DCHS1:

This gene is a member of the cadherin superfamily whose members encode calcium-dependent cell-cell

adhesion molecules. The encoded protein has a signal peptide, 27 cadherin repeat domains and a

unique cytoplasmic region. This particular cadherin family member is expressed in fibroblasts but

not in melanocytes or keratinocytes. The cell-cell adhesion of fibroblasts is thought to be

necessary for wound healing. [provided by RefSeq]

UniProtKB/Swiss-Prot: PCD16_HUMAN, Q96JQ0

Function: Calcium-dependent cell-adhesion protein (Potential)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the DCHS1 gene

Entrez Gene cytogenetic band: 11p15.4 Ensembl cytogenetic band: 11p15.4 HGNC cytogenetic band: 11p15.4

DCHS1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 11 GeneLoc Exon Structure

GeneLoc location for GC11M006599: (about GC identifiers)

Start:	6,599,134 bp from pter
End:	6,633,656 bp from pter
Size:	34,523 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000011.8 NT_009237.17

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: PCD16_HUMAN, Q96JQ0 (See protein sequence)

Recommended Name: Protocadherin-16 precursor

Size: 3298 amino acids; 346181 Da

Subcellular location: Cell membrane; Single-pass type I membrane protein (By similarity)

Secondary accessions: O15098

Post-translational modifications:

View phosphorylation sites using PhosphoSite²

REFSEQ proteins: NP_003728.1

ENSEMBL proteins:

ENSP00000299441

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Browse Abcam for Recombinant Proteins
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

2 Gene Ontology (GO) cellular component terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005886	plasma membrane	IEA	--
GO:0016021	integral to membrane	IEA	--

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Antibodies for DCHS1:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Search for antibodies at Abcam and the World's Antibody Gateway (free search engine of over 150 antibody companies)
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for DCHS1

Assays for DCHS1:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q96JQ0

ProtoNet protein and cluster: Q96JQ0

1 Blocks protein family: IPB002126 Cadherin

UniProtKB/Swiss-Prot: PCD16_HUMAN, Q96JQ0

Similarity: Contains 27 cadherin domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (DCHS1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (DCHS1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003737

Applied Biosystems Silencer® siRNAs for DCHS1

Sigma-Aldrich siRNA and siRNA Panels for DCHS1

Sigma-Aldrich shRNA for DCHS1

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_003737
Myc/DDK tagged cDNA clone in CMV expression vector: NM_003737
untagged cDNA clone in CMV expression vector: NM_003737

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_003737

UniProtKB/Swiss-Prot: PCD16_HUMAN, Q96JQ0

Function: Calcium-dependent cell-adhesion protein (Potential)

2 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005509	calcium ion binding	IEA	--
GO:0005515	protein binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
About This Section

1 Interacting protein for DCHS1 (ENSP00000299441³) via UniProtKB, MINT, and/or STRING

Interactant		Interaction Details
GeneCard	External ID(s)	Interaction Details
FGA	ENSP00000306361³	STRING (score=.896)

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3 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007155	cell adhesion	IEA	--
GO:0007156	homophilic cell adhesion	IEA	--
GO:0016339	calcium-dependent cell-cell adhesion	NAS	9199196

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for DCHS1

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (DCHS1)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (DCHS1)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003737

Sigma-Aldrich siRNA and siRNA Panels for DCHS1

Sigma-Aldrich shRNA for DCHS1

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_003737

REFSEQ mRNAs for DCHS1 gene:

NM_003737.2

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_003737

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_003737
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_003737
                                 untagged cDNA clone in CMV expression vector: NM_003737

Additional cDNA sequence:

AB000895.1 AB053446.1 AK021852.1 AL831828.1 BC038382.1

6 DOTS entries:

DT.442759 DT.92421739 DT.95168984 DT.100750224 DT.99952741 DT.120751357

24/676 AceView cDNA sequences (see all 676 ):

AW590772 BG231932 AI696153 CR614001 BG427285 BQ679013 BE467712 CD251679

AW016909 BC014863 BQ684142 AA344001 AI760515 BI764893 AW264216 AW806802

BM505545 BU185308 BQ876325 AA001907 BQ707219 CB216751 NM_003737 BQ883277

highest scoring ESTs for DCHS1:

AB000895 AB053446 AL045659 AA035798 AA453795 AA453880 AA503876 AA506313 AA662358 AA776242

Unigene Cluster for DCHS1:

Dachsous 1 (Drosophila)

Hs.199850 [show with all ESTs]

Unigene Representative Sequence: AB053446

GeneLoc Exon Structure

1 Ensembl transcript including schematic representation:

ENST00000299441

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

DCHS1 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for DCHS1

¹ / ² / ³

8 probe-sets matching DCHS1 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
47586_s_at²^{, 3}	U95-B	1	1.00	1.00	0.82	0.86	AL045659	0.80	1.00	0.91	1
47587_r_at²^{, 3}	U95-B	1	1.00	1.00	0.35	1.29	AL045659	0.80	1.00	0.91	1
44770_s_at²^{, 3}	U95-B	1	1.00	1.00	0.91	1.09	AI341166	0.40	1.00	0.76	1
1689_at²^{, 3}	U95-A	1	1.00	1.00	-0.13	0.77	AB000895	0.80	1.00	0.91	1
218892_at²^{, 3}	U133-A	1	1.00	1.00	--	--	NM_024542	0.20	1.00	0.72	1
222101_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	BF222893	0.20	1.00	0.72	1
218892_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
222101_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks DCHS1 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: TTTGGACCCA

SOURCE GeneReport for Unigene cluster: Hs.199850
UniProtKB/Swiss-Prot: PCD16_HUMAN, Q96JQ0
Tissue specificity: Fibroblast specific

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for DCHS1 gene from 5/9 species (see all 9 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	DCHS1¹	--	dachsous 1 (Drosophila)	89.85(n) 93.87(a)	476837 XM_848640.1 XP_853733.1
cow (Bos taurus)	DCHS1¹	--	similar to KIAA1773 protein	89.4(n) 93.78(a)	515576 XM_593617.3 XP_593617.2
mouse (Mus musculus)	Dchs1^{1, 5}	7⁵	dachsous 1 (Drosophila)^{1, 5}	87.37(n)¹ 92.71(a)¹	233651¹ XM_194371.8¹ XP_194371.7¹ AI414982⁵ AK014167⁵ (see all 10)
chicken (Gallus gallus)	DCHS1¹	--	dachsous 1 (Drosophila)	62.42(n) 57.84(a)	419073 XM_417264.2 XP_417264.2
zebrafish (Danio rerio)	im:7136458¹	--	im:7136458	56.57(n) 52.9(a)	553300 XM_001921249.1 XP_001921284.1

About this table Species with no ortholog for DCHS1

ENSEMBL Gene Tree for DCHS1

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for DCHS1 gene

DCHS2² FAT4²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/154 NCBI SNPs in DCHS1 are shown (see all 154 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 121)

AB	SNP ID	Valid	Chr 11 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
	rs4758443^1,2	A,C,F,H	6605000(+)	`GCACCG/ATGATG`	1	M/T	mis¹ ese³		8		EU EA WA	834
	rs2659875^1,2	C,F,H	6603076(-)	`AGGGCC/TGTGCC`	1	R/C	mis¹ ese³		8		EU EA WA	832
--	rs7924553^1,2	C,F,H	6603160(+)	`GGAGAC/TACGGC`	1	V/I	mis¹ ese³		8		EU EA WA	814
	rs7108483^1,2	F,H	6634687(+)	`GAAGAG/ATTCTG`	1	--	ng3¹		4		EU EA WA	416
	rs11040946^1,2	F,H	6635022(+)	`TGGTTG/AGGTAG`	1	--	ng3¹		4		EU EA WA	418
	rs2659871^1,2	A,C,F,H	6609194(-)	`CCTCCG/AGGAAC`	1	P/P	syn¹ ese³		4		EU EA WA	420
	rs997263^1,2	A,C,F,H	6612009(-)	`GCCCAC/TAGCGG`	1	H/H	syn¹ ese³		10		NA EA EU WA	808
--	rs2659872^1,2	A	6608386(-)	`GCGCTC/TACGGT`	1	L/L	syn¹ ese³		0	--	--	--	--
	rs2555172^1,2	A,C,F,H,O	6622630(-)	`CGAGGT/GGCCTC`	1	--	int¹		4		EU EA WA	420
	rs1876302^1,2	A,C,F,H,O	6628916(-)	`AGTGCG/ATATTA`	1	--	int¹		8		EU EA WA NA	620

About this table

HapMap Linkage Disequilibrium images for DCHS1 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 603057

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

4 PubMed articles for DCHS1 gene:

Multiple cadherins are expressed in human fibroblasts. (PubMed id 9199196)^{2, 3, 4} Matsuyoshi N. and Imamura S. (1997)
Identification of three novel non-classical cadherin genes through comprehensive analysis of large cDNAs. (PubMed id 11597768)^{3, 4} Nakajima D.... Ohara O. (2001)
The consensus coding sequences of human breast and colorectal cancers. (PubMed id 16959974)⁴ Sjoeblom T.... Velculescu V.E. (2006)
Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)³ Ota T....Sugano S. (2004)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 8642	HGNC: 13681	AceView: CLN2andDCHS1	Ensembl:ENSG00000166341	euGenes: HUgn8642
ECgene: DCHS1	H-InvDB: DCHS1

(According to HUGE)
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HUGE: KIAA1773

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Licensable Technologies for DCHS1
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for DCHS1:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for DCHS1-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for DCHS1		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for DCHS1		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
	Cell Selection/Detection Kits & Reagents		ELISA/Assay Development Kits & Reagents
	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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	Custom Service for Rabbit Pab from Full-length Protein

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Search OriGene for DCHS1

Search Tocris compounds for DCHS1

Search www.enzolifesicences.com for proteins, assays, substrates, inhibitors & antibodies

Search Novus for antibodies for DCHS1

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DCHS1 Gene

protein-coding GIFtS: 47

Aliases &
Descriptions
for DCHS1

Summaries
for DCHS1

Genomic Location
for DCHS1

Proteins
for DCHS1

Protein Domains/
Families
for DCHS1

Gene Function
for DCHS1

Pathways & Interactions
for DCHS1

Drugs & Compounds
for DCHS1

Transcripts
for DCHS1

Expression
for DCHS1

Orthologs
for DCHS1

Paralogs
for DCHS1

SNPs/Variants
for DCHS1

Disorders & Mutations
for DCHS1

Medical News
for DCHS1

Publications
for DCHS1

Search for DCHS1

Genome Databases showing DCHS1

Other Databases showing DCHS1

Specialized Databases showing DCHS1

Licensable Technologies
for DCHS1

Services
for DCHS1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

DCHS1 Gene

protein-coding GIFtS: 47

Aliases & Descriptionsfor DCHS1

Summariesfor DCHS1

Genomic Locationfor DCHS1

Proteinsfor DCHS1

Protein Domains/Familiesfor DCHS1

Gene Functionfor DCHS1

Pathways & Interactionsfor DCHS1

Drugs & Compoundsfor DCHS1

Transcriptsfor DCHS1

Expression for DCHS1

Orthologsfor DCHS1

Paralogsfor DCHS1

SNPs/Variantsfor DCHS1

Disorders & Mutationsfor DCHS1

Medical Newsfor DCHS1

Publicationsfor DCHS1

Search for DCHS1

Genome Databases showing DCHS1

Other Databases showing DCHS1

Specialized Databases showing DCHS1

Licensable Technologiesfor DCHS1

Servicesfor DCHS1

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for DCHS1

Summaries
for DCHS1

Genomic Location
for DCHS1

Proteins
for DCHS1

Protein Domains/
Families
for DCHS1

Gene Function
for DCHS1

Pathways & Interactions
for DCHS1

Drugs & Compounds
for DCHS1

Transcripts
for DCHS1

Expression
for DCHS1

Orthologs
for DCHS1

Paralogs
for DCHS1

SNPs/Variants
for DCHS1

Disorders & Mutations
for DCHS1

Medical News
for DCHS1

Publications
for DCHS1

Licensable Technologies
for DCHS1

Services
for DCHS1