DCDC5 Gene
protein-coding GIFtS : 43
GCID: GC11 M030809
doublecortin domain containing 5
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Aliasesfor DCDC5 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Doublecortin Domain Containing 5 1 2 KIAA14933 5 FLJ461541 Doublecortin Domain-Containing Protein 52
Export aliases for DCDC5 gene to outside databases
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Summariesfor DCDC5 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for DCDC5 : This gene encodes a member of the doublecortin family. The protein encoded by this gene contains two doublecortin domains. The doublecortin domain has been demonstrated to bind tubulin and enhance microtubule polymerization. Alternatively spliced transcript variants encoding distinct isoforms have been found, but the full-length nature of some variants is not determined. (provided by RefSeq, Feb 2011)
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Genomic Viewsfor DCDC5 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000011.9 NC_018922.1 NT_009237.18 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the DCDC5 gene promoter: LHX3b/Lhx3b POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) Cdc5 POU3F2 Arnt E47 POU2F1 POU2F1a LHX3a/Lhx3a Other transcription factors Search SABiosciences Chromatin IP Primers for DCDC5 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCDC5
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 11p14.1 Ensembl cytogenetic band: 11p13 HGNC cytogenetic band: 11p14.1 DCDC5 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 11 GeneLoc Exon Structure
GeneLoc location for GC11M030809: view genomic region
(about GC identifiers )
Start:
30,851,916 bp from pter
End:
31,149,212 bp from pter
Size:
297,297 bases
Orientation:
minus strand
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Proteinsfor DCDC5 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: DCDC5_HUMAN, Q6ZRR9 (See
protein sequence )Recommended Name: Doublecortin domain-containing protein 5 Size : 648 amino acids; 72753 Da
Sequence caution : Sequence=BAC87240.1; Type=Miscellaneous discrepancy; Sequence=CAO03425.1; Type=Erroneous gene modelprediction;
Secondary accessions : B1AL47Explore the universe of human proteins at neXtProt for DCDC5: NX_Q6ZRR9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q6ZRR9 DCDC5 Protein expression data from MOPED and PaxDb : About this image REFSEQ proteins: NP_065920.2 ENSEMBL proteins: ENSP00000404672 ENSP00000306898 ENSP00000401912 ENSP00000385936 ENSP00000341700 Human Recombinant Protein Products for DCDC5: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005622 intracellular
-- --
DCDC5 for ontologies About GeneDecksing DCDC5 Antibody Products: Assay Products for DCDC5:
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Protein
Domains / Familiesfor DCDC5 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
DCDC5 for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q6ZRR9 ProtoNet protein and cluster: Q6ZRR9
1 Blocks protein family : IPB000772 Ricin B lectin domain UniProtKB/Swiss-Prot: DCDC5_HUMAN, Q6ZRR9 Similarity : Contains 2 doublecortin domains
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Functionfor DCDC5 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
inGenious Targeting Laboratory ,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase ,
shRNA from
OriGene ,
Sirion Biotech ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Sirion Biotech ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
Sirion Biotech ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Phenotypes: 1 GenomeRNAi human phenotype for DCDC5 :Animal Models: In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCDC5
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Pathways & Interactionsfor DCDC5 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DCDC5 Gene Ontology (GO): 1 biological process term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0035556 intracellular signal transduction
IEA --
DCDC5 for ontologies About GeneDecksing
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Drugs & Compoundsfor DCDC5 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for DCDC5 Search CenterWatch for drugs/clinical trials and news about DCDC5
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Transcriptsfor DCDC5 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
Sirion Biotech ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for DCDC5 gene (2 alternative transcripts): NM_198462.2 NM_020869.3 Unigene Cluster for DCDC5:
Doublecortin domain containing 5 Hs.530438 [show with all ESTs ] Unigene Representative Sequence: NM_020869 7 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000444572 (uc001mss.1 ) ENST00000303697 (uc009yjj.2 ) ENST00000483396 (uc021qfk.1 uc009yjk.1 )ENST00000429306 ENST00000437348 (uc009yjl.1 ) ENST00000406071 ENST00000339794 4 DOTS entries : DT.430080 DT.101978078
DT.92013273 DT.307316 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for DCDC5 About this scheme ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 SP1 :                     -     -                 SP2 :                                         SP3 :                                        
ECgene alternative splicing isoforms for DCDC5
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Expression for DCDC5 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section DCDC5 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: -- About this image DCDC5 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table
See DCDC5 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for DCDC5 SOURCE GeneReport for Unigene cluster: Hs.530438 SABiosciences Custom PCR Arrays for DCDC5 Primer Products: Browse OriGene genome-wide validated SYBR primer pairs Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat DCDC5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DCDC5 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCDC5 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCDC5
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Orthologsfor DCDC5 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for DCDC5 gene from 2/7 species (see all 7 ) About this table
ENSEMBL Gene Tree for DCDC5 (if available)TreeFam Gene Tree for DCDC5 (if available)
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Paralogsfor DCDC5 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor DCDC5 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 11 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for DCDC5 (30851916 - 31101916 bp, first 250kb of DCDC5)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for DCDC5: --
SABiosciences Cancer Mutation PCR Assays
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Disorders
/ Diseasesfor DCDC5 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
DCDC5 for disorders About MalaCards
DCDC5 for disorders About GeneDecksing
OMIM gene information: 612321
OMIM disorders : --Human Genome Epidemiology (HuGE) Navigator: DCDC5 (3 documents) Export disorders for DCDC5 gene to outside databases
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Publicationsfor DCDC5 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for DCDC5 gene, integrated from 9 sources (see all 12 ): (articles sorted by number of sources associating them with DCDC5) Utopia : connect your pdf to the dynamic world of online information
The evolving doublecortin (DCX) superfamily. (PubMed id 16869982) 1 , 3 Reiner O....Bergmann S. (2006) Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811) 1 , 2 Taylor T.D....Sakaki Y. (2006) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PubMed id 22797727) 1 Okada Y....Tanaka T. (2012) Linking cytoplasmic dynein and transport of Rab8 vesic les to the midbody during cytokinesis by the doublecortin domain-containing 5 pr otein. (PubMed id 22159412) 1 Kaplan A. and Reiner O. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) The doublecortin gene family and disorders of neurona l structure. (PubMed id 20236041) 1 Dijkmans T.F....Vreugdenhil E. (2010) Genome-wide association studies of serum magnesium, p otassium, and sodium concentrations identify six Loci influencing serum magnesi um levels. (PubMed id 20700443) 1 Meyer T.E.... . (2010) Twenty bone-mineral-density loci identified by large- scale meta-analysis of genome-wide association studies. (PubMed id 19801982) 1 Rivadeneira F....Uitterlinden A.G. (2009) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002)
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External Searches for DCDC5 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing DCDC5 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing DCDC5 gene
(According to HUGE )
About This Section
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Specialized Databases showing DCDC5 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for DCDC5 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for DCDC5 gene: Search GeneIP for patents involving DCDC5 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor DCDC5 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 and Sirion Biotech , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript , LifeMap BioReagents , and Sirion Biotech , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences , In Situ Hybridization Assays from Advanced Cell Diagnostics , Animal models from inGenious Targeting Laboratory )About This Section
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DCDC5 Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DCDC5 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCDC5 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat DCDC5 Search QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCDC5 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat DCDC5
Search Tocris compounds for DCDC5
DCDC5 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCDC5
Search ThermoFisher Antibodies for DCDC5
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat DCDC5
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