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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DCDC5 Gene

protein-coding   GIFtS: 43
GCID: GC11M030809

doublecortin domain containing 5

  Search for DCDC5
in our new
 Human Malady Compendium 
Biological research products
for DCDC5
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Doublecortin Domain Containing 51 2
KIAA14933 5
FLJ461541
Doublecortin Domain-Containing Protein 52

External Ids:    HGNC: 247991   Entrez Gene: 1005066272   Ensembl: ENSG000001709597   OMIM: 6123215   UniProtKB: Q6ZRR93   

Export aliases for DCDC5 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for DCDC5:
This gene encodes a member of the doublecortin family. The protein encoded by this gene contains two doublecortin
domains. The doublecortin domain has been demonstrated to bind tubulin and enhance microtubule polymerization.
Alternatively spliced transcript variants encoding distinct isoforms have been found, but the full-length nature of
some variants is not determined. (provided by RefSeq, Feb 2011)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000011.9  NC_018922.1  NT_009237.18  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the DCDC5 gene promoter:
         LHX3b/Lhx3b   POU3F2 (N-Oct-5b)   POU3F2 (N-Oct-5a)   Cdc5   POU3F2   Arnt   E47   POU2F1   POU2F1a   LHX3a/Lhx3a   
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for DCDC5

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCDC5


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 11p14.1   Ensembl cytogenetic band:  11p13   HGNC cytogenetic band: 11p14.1

DCDC5 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DCDC5 gene location

GeneLoc information about chromosome 11         GeneLoc Exon Structure

GeneLoc location for GC11M030809:  view genomic region     (about GC identifiers)

Start:
30,851,916 bp from pter      End:
31,149,212 bp from pter
Size:
297,297 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: DCDC5_HUMAN, Q6ZRR9 (See protein sequence)
Recommended Name: Doublecortin domain-containing protein 5  
Size: 648 amino acids; 72753 Da
Sequence caution: Sequence=BAC87240.1; Type=Miscellaneous discrepancy; Sequence=CAO03425.1; Type=Erroneous gene model
prediction;
Secondary accessions: B1AL47

Explore the universe of human proteins at neXtProt for DCDC5: NX_Q6ZRR9

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_Q6ZRR9

  • DCDC5 Protein expression data from MOPED and PaxDb:    About this image 
    DCDC5 Protein Expression
    REFSEQ proteins: NP_065920.2  
    ENSEMBL proteins: 
     ENSP00000404672   ENSP00000306898   ENSP00000401912   ENSP00000385936   ENSP00000341700  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ----

    DCDC5 for ontologies           About GeneDecksing



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    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    DCDC5 for domains           About GeneDecksing

    2 InterPro domains/families:
     IPR000772 Ricin_B_lectin
     IPR003533 Doublecortin_dom

    Graphical View of Domain Structure for InterPro Entry Q6ZRR9

    ProtoNet protein and cluster: Q6ZRR9

    1 Blocks protein family: IPB000772 Ricin B lectin domain

    UniProtKB/Swiss-Prot: DCDC5_HUMAN, Q6ZRR9
    Similarity: Contains 2 doublecortin domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, Sirion Biotech, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, Sirion Biotech, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Phenotypes:
         1 GenomeRNAi human phenotype for DCDC5:
     Decreased homologous recombina 

    Animal Models:
       inGenious Targeting Laboratory - Customizable classic, inducible, and humanized mouse model solutions for DCDC5 

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DCDC5

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0035556intracellular signal transduction IEA--

    DCDC5 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DCDC5
    Search CenterWatch for drugs/clinical trials and news about DCDC5 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section

    REFSEQ mRNAs for DCDC5 gene (2 alternative transcripts): 
    NM_198462.2  NM_020869.3  

    Unigene Cluster for DCDC5:

    Doublecortin domain containing 5
    Hs.530438  [show with all ESTs]
    Unigene Representative Sequence: NM_020869
    7 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000444572(uc001mss.1) ENST00000303697(uc009yjj.2) ENST00000483396(uc021qfk.1 uc009yjk.1)
    ENST00000429306 ENST00000437348(uc009yjl.1) ENST00000406071 ENST00000339794


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    hsa-miR-299-5p hsa-miR-579 hsa-miR-3132 hsa-miR-130a* hsa-miR-146a hsa-miR-23c hsa-miR-146a* hsa-miR-3199
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    Inhib. RNA
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    4 DOTS entries:

    DT.430080  DT.101978078  DT.92013273  DT.307316 

    GeneLoc Exon Structure

    3 Alternative Splicing Database (ASD) splice patterns (SP) for DCDC5    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18
    SP1:                                                              -           -                                             
    SP2:                                                                                                                        
    SP3:                                                                                                                        


    ECgene alternative splicing isoforms for DCDC5

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DCDC5 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: --
    DCDC5 Expression
    About this image

    DCDC5 expression in embryonic tissues and stem cells
    Expression by the Database of Embryonic development, Stem cell research, and Regenerative medicine    About this table

    6 LifeMap In Vivo Development Anatomical Compartments/Cells 
    Tissue Anatomical Compartment CellCategory (developmental path)
    Spinal CordSpinal Dorsal ColumnsDorsal Spinal Cord Progenitor CellsSpinal Cord
    Spinal CordSpinal Ventral ColumnsVentral Spinal Cord Progenitor CellsMotor Neurons
    BrainMedulla OblongataBrain
    Neural TubeTelencephalonNeural Tube
    Spinal CordSpinal Dorsal ColumnsSpinal Cord
    Spinal CordSpinal Ventral ColumnsSpinal Cord
    Expression: Positive    Negative     Selective marker
    Experimental details: Curated     Microarrays     In-situ hybridization

    See DCDC5 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DCDC5

    SOURCE GeneReport for Unigene cluster: Hs.530438
        SABiosciences Custom PCR Arrays for DCDC5
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCDC5

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of chordates.

    Orthologs for DCDC5 gene from 2/7 species (see all 7)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dcdc51 , 5 doublecortin domain containing 51, 5 76.55(n)1
    66.93(a)1
      2 (55.58 cM)5
    3294821  XM_001481324.31  XP_001481374.31 
     1062220575 
    lizard
    (Anolis carolinensis)
    Reptilia DCDC16
    --
    58(a)
    1 ↔ 1
    1(60256746-60278336)


    ENSEMBL Gene Tree for DCDC5 (if available)
    TreeFam Gene Tree for DCDC5 (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/1950 NCBI SNPs in DCDC5 are shown (see all 1950    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 11 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1447685161,2
    --30884718(+) CTGAAC/TGCTTG 1 -- int10--------
    rs1478972491,2
    --30884798(+) AACCCA/CAGGTG 1 -- int10--------
    rs1415784241,2
    --30884943(+) GGAAAA/GCAGTA 1 -- int10--------
    rs1909355381,2
    --30885238(+) GACGCA/GTATTT 1 -- ut310--------
    rs1428111231,2
    --30885254(+) TCATCC/TATTTG 1 -- ut310--------
    rs1830800381,2
    --30885301(+) TTATGA/GAAATG 1 -- ut310--------
    rs1879632231,2
    --30885535(+) TGGGTA/GTGGTG 1 -- ut310--------
    rs1906496411,2
    --30885766(+) GAACTC/GCTTCA 1 -- ut310--------
    rs1176641671,2
    F--30885783(+) CCTGTC/TGAAGT 1 -- ut311Minor allele frequency- T:0.04EA 120
    rs1510283491,2
    --30885791(+) AGTCTC/GAAATG 1 -- ut310--------

    HapMap Linkage Disequilibrium report for DCDC5 (30851916 - 31101916 bp, first 250kb of DCDC5)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for DCDC5: --

    SABiosciences Cancer Mutation PCR Assays
    Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DCDC5
    DNA2.0 Custom Variant and Variant Library Synthesis for DCDC5

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    DCDC5 for disorders           About MalaCards

    DCDC5 for disorders           About GeneDecksing

    OMIM gene information: 612321    OMIM disorders: --

    Human Genome Epidemiology (HuGE) Navigator: DCDC5 (3 documents)

    Export disorders for DCDC5 gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DCDC5 gene, integrated from 9 sources (see all 12):
    (articles sorted by number of sources associating them with DCDC5)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. The evolving doublecortin (DCX) superfamily. (PubMed id 16869982)1, 3 Reiner O....Bergmann S. (2006)
    2. Human chromosome 11 DNA sequence and analysis including novel gene identification. (PubMed id 16554811)1, 2 Taylor T.D....Sakaki Y. (2006)
    3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    4. Meta-analysis identifies multiple loci associated with kidney function-related traits in east Asian populations. (PubMed id 22797727)1 Okada Y....Tanaka T. (2012)
    5. Linking cytoplasmic dynein and transport of Rab8 vesic les to the midbody during cytokinesis by the doublecortin domain-containing 5 pr otein. (PubMed id 22159412)1 Kaplan A. and Reiner O. (2011)
    6. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614)1 Rose J.E....Uhl G.R. (2010)
    7. The doublecortin gene family and disorders of neurona l structure. (PubMed id 20236041)1 Dijkmans T.F....Vreugdenhil E. (2010)
    8. Genome-wide association studies of serum magnesium, p otassium, and sodium concentrations identify six Loci influencing serum magnesi um levels. (PubMed id 20700443)1 Meyer T.E.... . (2010)
    9. Twenty bone-mineral-density loci identified by large- scale meta-analysis of genome-wide association studies. (PubMed id 19801982)1 Rivadeneira F....Uitterlinden A.G. (2009)
    10. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 100506627 HGNC: 24799 Ensembl:ENSG00000170959 euGenes: HUgn100506627 ECgene: DCDC5
    H-InvDB: DCDC5

    (According to HUGE)
    About This Section
    HUGE: KIAA1493

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DCDC5 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for DCDC5 gene:
    Search GeneIP for patents involving DCDC5

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, LifeMap BioReagents, and Sirion Biotech, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory)
    About This Section

     
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    GeneCards Homepage - Last full update: 19 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013 , 14 May 2013

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    VWF
    (GIFTS: 73)
    von Willebrand factor
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    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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