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DCDC2 Gene

protein-coding GIFtS: 51

GC06M024277

doublecortin domain containing 2
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
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Aliases
DCDC2A ^¹, ²
KIAA1154 ^¹, ³
OTTHUMP00000017887 ^²
RU2 ^¹, ², ³
RU2S ^²

Descriptions
Protein RU2S ^³
doublecortin domain containing 2 ^²

External Ids
HGNC: 18141¹
Entrez Gene: 51473²
UniProtKB: Q9UHG0³
Ensembl: ENSG00000146038⁷

Search outside databases for aliases for DCDC2 gene

Previous GC identifers: GC06M024233 GC06M024254

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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EntrezGene summary for DCDC2:

This gene encodes a protein with two doublecortin peptide domains. This domain has been

demonstrated to bind tubulin and enhance microtubule polymerization. Mutations in this gene have

been associated with Reading Disability (RD), also referred to as developmental dyslexia.

[provided by RefSeq]

Gene Wiki entry for DCDC2

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
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Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the DCDC2 gene

Entrez Gene cytogenetic band: 6p22.1 Ensembl cytogenetic band: 6p22.2 HGNC cytogenetic band: 6p22.1

DCDC2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure

GeneLoc location for GC06M024277: (about GC identifiers)

Start:	24,279,962 bp from pter
End:	24,466,259 bp from pter
Size:	186,298 bases
Orientation:	minus strand

RefSeq DNA sequence:

NC_000006.10 NT_007592.14

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: DCDC2_HUMAN, Q9UHG0 (See protein sequence)

Recommended Name: Doublecortin domain-containing protein 2

Size: 476 amino acids; 52834 Da

PDB structures from and Proteopedia :

2DNF (3D)

Secondary accessions: Q5VTR8 Q5VTR9 Q86W35 Q9UFD1 Q9UHG1 Q9ULR6

Alternative splicing: 2 isoforms: Q9UHG0-1 Q9UHG0-2

REFSEQ proteins: NP_057440.2

ENSEMBL proteins:

ENSP00000367711 ENSP00000367715

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
	Browse Purified and Recombinant Proteins at Millipore
	Browse Human Recombinant Proteins at Sigma-Aldrich
	Browse R&D Systems for human recombinant proteins
	Browse recombinant and purified proteins available from Enzo Life Sciences
	Recombinant Proteins from Abcam (DCDC2)
	Human Recombinant Proteins from Abnova (DCDC2)

OriGene Purified Recombinant Human Protein: DCDC2

Antibodies for DCDC2:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Sigma-Aldrich Antibodies for DCDC2
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (DCDC2), each with their Abpromise^SM
	Monoclonal and Polyclonal Antibodies from Abnova (DCDC2)
	Novus Biologicals Antibodies for DCDC2

Assays for DCDC2:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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Graphical View of Domain Structure for InterPro Entry Q9UHG0

ProtoNet protein and cluster: Q9UHG0

UniProtKB/Swiss-Prot: DCDC2_HUMAN, Q9UHG0

Similarity: Contains 2 doublecortin domains

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (DCDC2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (DCDC2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016356

Applied Biosystems Silencer® siRNAs for DCDC2

Sigma-Aldrich siRNA for DCDC2

Sigma-Aldrich shRNA for DCDC2

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Invitrogen Clones for DCDC2
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_016356
Myc/DDK tagged cDNA clone in CMV expression vector: NM_016356
untagged cDNA clone in CMV expression vector: NM_016356

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_016356

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Gene Network Central^TM Interacting Genes and Proteins Network for DCDC2

3 Gene Ontology (GO) biological process terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0001764	neuron migration	NAS	16278297
GO:0006968	cellular defense response	TAS	10601354
GO:0007242	intracellular signaling cascade	IEA	--

About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
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Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for DCDC2

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (DCDC2)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (DCDC2)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_016356

Sigma-Aldrich siRNA for DCDC2

Sigma-Aldrich shRNA for DCDC2

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_016356

REFSEQ mRNAs for DCDC2 gene:

NM_016356.3

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_016356

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_016356
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_016356
                                 untagged cDNA clone in CMV expression vector: NM_016356

Additional cDNA sequence:

AB032980.2 AF181721.1 AK027036.1 BC050704.1 CR611697.1

7 DOTS entries:

DT.40245473 DT.100820887 DT.95261613 DT.100820888 DT.92013933 DT.92421305 DT.86851207

24/56 AceView cDNA sequences (see all 56 ):

AW150317 NM_016356 BQ644474 CD722449 AA127805 BM927835 CR611697 BQ650550

AW444617 AI858903 BM833169 AF181721 BF593580 BQ644671 AA127741 BQ948660

AW965006 BM923267 AA694346 BE139585 AB032980 BX279966 AA863443 AI219704

highest scoring ESTs for DCDC2:

AA004587 AB032980 AF181721 AK027036 BC050704 BM923267 BM927835 BQ644474 BQ644671 CB140335

Unigene Cluster for DCDC2:

Doublecortin domain containing 2

Hs.61345 [show with all ESTs]

Unigene Representative Sequence: AB032980

GeneLoc Exon Structure

2 Ensembl transcripts including schematic representations:

ENST00000378450 ENST00000378454

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
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DCDC2 expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for DCDC2

¹ / ² / ³

6 probe-sets matching DCDC2 gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
51889_at²^{, 3}	U95-B	1	1.00	1.00	0.97	1.11	AA127741	0.60	1.00	0.82	1
71091_at²^{, 3}	U95-D	1	0.69	1.00	0.97	0.91	AA004587	0.80	1.00	0.91	1
222925_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AW444617	0.40	1.00	0.76	1
222926_at²^{, 3}	U133-B	1	1.00	1.00	--	--	AB032980	0.80	1.00	0.91	1
222925_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
222926_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks DCDC2 for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.61345
UniProtKB/Swiss-Prot: DCDC2_HUMAN, Q9UHG0
Tissue specificity: Ubiquitous

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
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Orthologs for DCDC2 gene from 5/7 species (see all 7 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	DCDC2¹	--	doublecortin domain containing 2	87.42(n) 86.77(a)	488244 XM_848422.1 XP_853515.1
chimpanzee (Pan troglodytes)	DCDC2¹	--	doublecortin domain containing 2	93.11(n) 92.06(a)	472225 XM_527599.2 XP_527599.2
cow (Bos taurus)	DCDC2¹	--	doublecortin domain containing 2	78.06(n) 74.95(a)	518323 XM_596512.3 XP_596512.3
rat (Rattus norvegicus)	Dcdc2¹	--	doublecortin domain containing 2	83.58(n) 83.16(a)	291130 XM_225316.4 XP_225316.4
mouse (Mus musculus)	Dcdc2a^{1, 5}	13⁵	doublecortin domain containing 2a^{1, 5}	85.4(n)¹ 89.87(a)¹	195208¹ NM_177577.2¹ NP_808245.1¹ AK085257⁵ AK220370⁵ (see all 8)

About this table Species with no ortholog for DCDC2

ENSEMBL Gene Tree for DCDC2

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for DCDC2 gene

DCDC2B²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/1316 NCBI SNPs in DCDC2 are shown (see all 1316 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 452)

AB	SNP ID	Valid	Chr 6 pos	Sequence	Recs	AA Chg	Type	More	Recs	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--			--
	rs9358755^1,2	A,C,F,H	24282934(+)	`AAAATC/GTTCTA`	1	--	ut3¹ ese³		7	NA EU EA WA	552
	rs6456593^1,2	A,C,F,H	24282308(+)	`AGTGAG/CGGCAT`	1	--	ut3¹		8	EU EA WA	812
	rs7764902^1,2	A,C,F,H	24282813(+)	`TGTTAT/AAATTC`	1	--	ut3¹		7	EU EA WA NA	552
	rs7773748^1,2	A,C,F,H	24281720(+)	`AAGGAC/TGAAAT`	1	--	ut3¹ ese³		7	NA EU EA WA	550
	rs7744665^1,2	A,C,F,H	24282782(+)	`AAGTTA/CTCTGG`	1	--	ut3¹		7	EU EA WA NA	558
	rs7773379^1,2	A,C,F,H	24281564(+)	`GAGAAA/GAAATG`	1	--	ut3¹ trp³		7	NA EU EA WA	554
	rs12333304^1,2	A,C,F,H	24280790(+)	`AGAAAC/GAAAAG`	1	--	ut3¹		4	EU EA WA	420
--	rs6938529^1,2	A,C,F,H	24281248(+)	`ATTTGC/TCTACC`	1	--	ut3¹		8	EU EA WA	824
	rs6937665^1,2	A,C,F,H	24280905(+)	`ATATTA/GAAAGA`	1	--	ut3¹ ese³		7	EU EA WA NA	556
	rs6456594^1,2	A,C,F,H	24282312(+)	`ACGGCG/ATGGCG`	1	--	ut3¹		4	EU EA WA	406

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HapMap Linkage Disequilibrium images for DCDC2 (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 605755

Human Gene Mutation Database: DCDC2
Human Genome Epidemiology Navigator: DCDC2 (10 documents)

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
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10/17 PubMed articles for DCDC2 gene (see all 17 ):

A new antigen recognized by cytolytic T lymphocytes on a human kidney tumor results from reverse strand transcription. (PubMed id 10601354)^{2, 3, 4} Van den Eynde B.J.... Boon T. (1999)
Characterization of cDNA clones selected by the GeneMark analysis from size-fractionated cDNA libraries from human brain. (PubMed id 10574461)^{2, 3, 4} Hirosawa M....Ohara O. (1999)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
The DNA sequence and analysis of human chromosome 6. (PubMed id 14574404)^{3, 4} Mungall A.J.... Beck S. (2003)
Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)^{3, 4} Nakajima D.... Nagase T. (2002)
Investigation of the DCDC2 intron 2 deletion/compound short tandem repeat polymorphism in a large German dyslexia sample. (PubMed id 19018237)^{1, 3} Ludwig K.U....Hoffmann P. (2008)
Association of Attention-Deficit/Hyperactivity Disorder with a Candidate Region for Reading Disabilities on Chromosome 6p. (PubMed id 19362708)³ Couto J.M....Barr C.L. (2009)
The role of gene DCDC2 in German dyslexics. (PubMed id 19238550)³ Wilcke A....Ahnert P. (2009)
Investigation of interaction between DCDC2 and KIAA0319 in a large German dyslexia sample. (PubMed id 18810304)³ Ludwig K.U....Hoffmann P. (2008)
Polymorphism of DCDC2 Reveals Differences in Cortical Morphology of Healthy Individuals-A Preliminary Voxel Based Morphometry Study. (PubMed id 19096528)³ Meda S.A....Pearlson G.D. (2008)

(in PubMed, OMIM, and NCBI Bookshelf)
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		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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Entrez Gene: 51473	HGNC: 18141	AceView: DCDC2	Ensembl:ENSG00000146038	euGenes: HUgn51473
ECgene: DCDC2	H-InvDB: DCDC2

(According to HUGE)
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HUGE: KIAA1154

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
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Name	Description
ATLAS Chromosomes in Cancer entry for DCDC2	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for DCDC2
(Available from WIS Yeda, Salk, Tufts)

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(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
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Products for DCDC2:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for DCDC2-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for DCDC2		Antibodies for DCDC2
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for DCDC2		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

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DCDC2 Gene

protein-coding GIFtS: 51

Aliases &
Descriptions
for DCDC2

Summaries
for DCDC2

Genomic Location
for DCDC2

Proteins
for DCDC2

Protein Domains/
Families
for DCDC2

Gene Function
for DCDC2

Pathways & Interactions
for DCDC2

Drugs & Compounds
for DCDC2

Transcripts
for DCDC2

Expression
for DCDC2

Orthologs
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Medical News
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Genome Databases showing DCDC2

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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

DCDC2 Gene

protein-coding GIFtS: 51

Aliases & Descriptionsfor DCDC2

Summariesfor DCDC2

Genomic Locationfor DCDC2

Proteinsfor DCDC2

Protein Domains/Familiesfor DCDC2

Gene Functionfor DCDC2

Pathways & Interactionsfor DCDC2

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Disorders & Mutationsfor DCDC2

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Genome Databases showing DCDC2

Other Databases showing DCDC2

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Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for DCDC2

Summaries
for DCDC2

Genomic Location
for DCDC2

Proteins
for DCDC2

Protein Domains/
Families
for DCDC2

Gene Function
for DCDC2

Pathways & Interactions
for DCDC2

Drugs & Compounds
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for DCDC2

Expression
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