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Aliases & Descriptions for DCC
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases CRC18 2 CRCR1 2 IGDCC1 1 , 2 , 3
Descriptions Colorectal cancer suppressor 3 Immunoglobulin superfamily DCC subclass member 1 3 Tumor suppressor protein DCC 3 deleted in colorectal cancer protein 2 deleted in colorectal carcinoma 2 immunoglobulin superfamily, DCC subclass, member 1 2
Search outside databases for aliases for DCC genePrevious GC identifers: GC18P050053 GC18P049802 GC18P048119
Summaries for DCC (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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UniProtKB/Swiss-Prot: DCC_HUMAN, P43146 Function : Receptor for netrin required for axon guidance. Mediates axon attraction of neuronalgrowth cones in the developing nervous system upon ligand binding. Its association with UNC5proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor requiredfor apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressorgene
Gene Wiki entry for DCC (Deleted_in_Colorectal_Cancer)
Genomic Location for DCC
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the DCC gene Entrez Gene cytogenetic band: 18q21.3 Ensembl cytogenetic band: 18q21.2 HGNC cytogenetic band: 18q21.1 DCC Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18P048121:
(about GC identifiers )
Start:
48,120,569 bp from pter
End:
49,311,780 bp from pter
Size:
1,191,212 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000018.8 NT_010966.13 Proteins for DCC
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: DCC_HUMAN, P43146 (See
protein sequence )Recommended Name: Netrin receptor DCC precursor Size : 1447 amino acids; 158457 Da
Subunit : Interacts with the cytoplasmic part of UNC5A, UNC5B, UNC5C and probably UNC5D (Bysimilarity)
Subcellular location : Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia : 2ED7 (3D)
 2ED8 (3D)
 2ED9 (3D)
 2EDB (3D)
 2EDD (3D)
 2EDE (3D)
 
Post-translational modifications:
Ubiquitinated; mediated by SIAH1 or SIAH2 and leading to its subsequent proteasomal degradation(Probable)1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins: NP_005206.2 ENSEMBL proteins: ENSP00000304146 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for DCC: Assays for DCC:
Protein
Domains/ Families for DCC(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P43146 ProtoNet protein and cluster: P43146
3 Blocks protein families : IPB003598 Immunoglobulin C-2 type IPB003962 Fibronectin type III repeat signature IPB010560 Neogenin UniProtKB/Swiss-Prot: DCC_HUMAN, P43146 Similarity : Belongs to the immunoglobulin superfamily. DCC familySimilarity : Contains 6 fibronectin type-III domainsSimilarity : Contains 4 Ig-like C2-type (immunoglobulin-like) domains
Gene Function for DCC
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
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Clones , and
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Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005215 Applied Biosystems Silencer ® siRNAs for DCC Sigma-Aldrich siRNA and siRNA Panels for DCC Sigma-Aldrich shRNA Panels and shRNA for DCC Explore Sigma-Aldrich super-pooled esiRNAs               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005215                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005215                                  untagged cDNA clone in CMV expression vector: NM_005215  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005215 UniProtKB/Swiss-Prot: DCC_HUMAN, P43146 Function : Receptor for netrin required for axon guidance. Mediates axon attraction of neuronalgrowth cones in the developing nervous system upon ligand binding. Its association with UNC5proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor requiredfor apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressorgene
Genatlas biochemistry entry for DCC :netrin-1 receptor,expressed on spinal commissural axons and processing netrin-1 bindingactivity,inducing attraction in axon guidance through its cytoplasmic tail,inducing apoptosis inthe absence of its ligand,homolog of C elegans UNC-40
7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Dcc) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for DCC
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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1 Sigma-Aldrich "Your Favorite Gene" Pathway for DCC (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for DCC 5/27 Interacting proteins for DCC (P43146 1 ENSP00000304146 3 ) via UniProtKB, MINT, and/or STRING (see all 27
)About this table 5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7
):
About this table
Drugs & Compounds for DCC (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for DCC
Transcripts for DCC(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
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              OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005215 Sigma-Aldrich siRNA and siRNA Panels for DCC Sigma-Aldrich shRNA Panels and shRNA for DCC Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_005215
REFSEQ mRNAs for DCC gene: NM_005215.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005215
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005215                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005215                                  untagged cDNA clone in CMV expression vector: NM_005215  
Additional cDNA sequence: AK302643.1 AK310385.1 BC036524.1 M32292.1 S81335.1 X76132.1
7 DOTS entries : DT.309434 DT.91645250 DT.432979 DT.91652132 DT.121087434 DT.75188988 DT.75191285
24/27 AceView cDNA sequences (see all 27
):AA904417 AI656183 AL705537 M32292 BX101501 AI990787 BI463685 AI425016 AI138281 BX108694 BG771778 BV169651 AL044757 AI677901 AA889035 AI990038 AI911162 BI562450 BG193887 AA888969 BG189543 BG208261 AA609059 CO249615
highest scoring ESTs for DCC :AA907540 AI377843 AW188046 AW873579 X76132 AL044757 AW949550 AW949555 BG771778 BI463685
Unigene Cluster for DCC: Deleted in colorectal carcinoma Hs.579550 [show with all ESTs ] Unigene Representative Sequence: NM_005215 GeneLoc Exon Structure 2 Alternative Splicing Database (ASD) splice patterns (SP) for DCC ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23 ^ 24 ^ SP1 :                                             -         SP2 :                                   -                  
ExUns: 25 ^ 26 ^ 27 ^ 28 ^ 29 SP1 :           SP2 :          
About this scheme ECgene alternative splicing isoforms for DCC 1 Ensembl transcript including schematic representation : ENST00000304775
Expression for DCC
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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DCC expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for DCC 1 / 2 / 3
4 probe-sets matching DCC gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GTAACAAAAASOURCE GeneReport for Unigene cluster: Hs.579550 Expression variation in blood from EXPOLDB for DCC
UniProtKB/Swiss-Prot: DCC_HUMAN, P43146 Tissue specificity : Found in axons of the central and peripheral nervous system and indifferentiated cell types of the intestine
Orthologs for DCC
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for DCC gene from 5/10 species (see all 10
)
About this table Species with no ortholog for DCC ENSEMBL Gene Tree for DCC Paralogs for DCC (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for DCC gene BOC 2 CDON 2 NEO1 2
SNPs/Variants for DCC (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for DCC (up to first 250kb)
Disorders & Mutations for DCC
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 120470 UniProtKB/Swiss-Prot: DCC_HUMAN, P43146
Colorectal tumors that lost their capacity to differentiate into mucus producing cellsuniformly lack DCC expression. Inactivation of DCC due to allelic deletion and/or point mutationsmay cause both lymphatic and hematogenous metastasis of esophageal squamous cell carcinomas
Genatlas disease: DCC colorectal carcinoma,deleted in (see TSG18A) in endometrial carcinoma with lymph nodemetastasis,and in pancreatic carcinomas Human Gene Mutation Database : DCC Genetic Association Database: DCC Human Genome Epidemiology Navigator: DCC (11 documents) Tumor Gene Database : DCC Breast Cancer Gene Database : DCC
Medical News for DCC (Possibly Related Articles in
Doctor's Guide )
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Publications for DCC (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/62 PubMed articles for DCC gene (see all 62
): Identification of a chromosome 18q gene that is altered in colorectal cancers. (PubMed id 2294591) 2, 3, 4 Fearon E.R....Vogelstein B. (1990) Genotype phenotype correlations in Israeli colorectal cancer patients. (PubMed id 15523694) 3, 6 Starinsky S....Friedman E. (2005) No association between the Arg201Gly polymorphism of the DCC gene and colorectal cancer. (PubMed id 15646429) 3, 6 de Jong M.M....Kleibeuker J.H. (2004) The deleted in colorectal carcinoma (DCC) gene 201 R --> G polymorphism: no evidence for genetic association with autoimmune disease. (PubMed id 14571268) 3, 6 Hall R.J....Merriman T.R. (2003) Mammalian homologs of seven in absentia regulate DCC via the ubiquitin-proteasome pathway. (PubMed id 9334332) 3, 4 Hu G....Fearon E.R. (1997) Deleted in Colorectal Cancer (DCC) encodes a netrin receptor. (PubMed id 8861902) 3, 4 Keino-Masu K.... Tessier-Lavigne M. (1996) Point mutations and allelic deletion of tumor suppressor gene DCC in human esophageal squamous cell carcinomas and their relation to metastasis. (PubMed id 8187090) 3, 4 Miyake S.... Yuasa Y. (1994) The DCC gene product in cellular differentiation and colorectal tumorigenesis. (PubMed id 7926722) 3, 4 Hedrick L....Vogelstein B. (1994) The DCC gene: structural analysis and mutations in colorectal carcinomas. (PubMed id 8188295) 3, 4 Cho K.R.... Vogelstein B. (1994) Scrambled exons. (PubMed id 1991322) 3, 4 Nigro J.M.... Vogelstein B. (1991)
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Genome Databases showing DCC
(According to
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euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
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Other Databases showing DCC
(According to HUGE )
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--
Specialized Databases showing DCC (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for DCC (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for DCC:
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