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DCC Gene

protein-coding   GIFtS: 69

GC18P048121
deleted in colorectal carcinoma
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
CRC18 2
CRCR1 2
IGDCC1 1, 2, 3
Descriptions
Colorectal cancer suppressor 3
Immunoglobulin superfamily DCC subclass member 1 3
Tumor suppressor protein DCC 3
deleted in colorectal cancer protein 2
deleted in colorectal carcinoma 2
immunoglobulin superfamily, DCC subclass, member 1 2
External Ids
HGNC: 27011
Entrez Gene: 16302
UniProtKB: P431463
Ensembl: ENSG000001873237
Search outside databases for aliases for DCC gene

Previous GC identifers: GC18P050053 GC18P049802 GC18P048119

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

UniProtKB/Swiss-Prot: DCC_HUMAN, P43146
Function: Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal
growth cones in the developing nervous system upon ligand binding. Its association with UNC5
proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor required
for apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressor
gene

Gene Wiki entry for DCC (Deleted_in_Colorectal_Cancer)

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the DCC gene  

Entrez Gene cytogenetic band: 18q21.3   Ensembl cytogenetic band:  18q21.2   HGNC cytogenetic band: 18q21.1

DCC Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 18         GeneLoc Exon Structure

GeneLoc location for GC18P048121:     (about GC identifiers)

Start:
48,120,569 bp from pter
End:
49,311,780 bp from pter
Size:
1,191,212 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000018.8  NT_010966.13  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: DCC_HUMAN, P43146 (See protein sequence)
Recommended Name: Netrin receptor DCC precursor  
Size: 1447 amino acids; 158457 Da
Subunit: Interacts with the cytoplasmic part of UNC5A, UNC5B, UNC5C and probably UNC5D (By
similarity)
Subcellular location: Membrane; Single-pass type I membrane protein
PDB structures from and Proteopedia :
2ED7 (3D)    2ED8 (3D)    2ED9 (3D)    2EDB (3D)    2EDD (3D)    2EDE (3D)    

Post-translational modifications:

  • Ubiquitinated; mediated by SIAH1 or SIAH2 and leading to its subsequent proteasomal degradation
    (Probable)1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_005206.2  

    ENSEMBL proteins: 
    ENSP00000304146 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Browse Purified and Recombinant Proteins at Millipore
    Browse Human Recombinant Proteins at Sigma-Aldrich  
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    Recombinant Proteins from Abcam (DCC)
    Browse Abnova for Human Recombinant Proteins
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    3 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016020 membrane IEA--
    GO:0016021 integral to membrane IEA--
    GO:0030424 axon IEA--
    About this table

    Antibodies for DCC: 
    Browse Antibodies Central at Invitrogen
    Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
    Browse Antibodies at Sigma-Aldrich
    R&D Systems Antibodies for DCC
    Antibodies from Abcam (DCC), each with their AbpromiseSM
    Browse Abnova for Monoclonal and Polyclonal Antibodies
    Novus Biologicals Antibodies for DCC

    Assays for DCC: 
    Browse Invitrogen for biochemical assays
    Browse Kits and Assays available from Millipore
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/9 InterPro domains/families (see all 9 ):
     IPR003598 Ig_sub2
     IPR007110 Ig-like
     IPR010560 Neogenin_C
     IPR008957 Fibronectin_typ-III-like_fold
     IPR003599 Ig_sub


       GeneDecks  DCC for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P43146

    ProtoNet protein and cluster: P43146

    3 Blocks protein families:
    IPB003598 Immunoglobulin C-2 type
    IPB003962 Fibronectin type III repeat signature
    IPB010560 Neogenin


    UniProtKB/Swiss-Prot: DCC_HUMAN, P43146
    Similarity: Belongs to the immunoglobulin superfamily. DCC family
    Similarity: Contains 6 fibronectin type-III domains
    Similarity: Contains 4 Ig-like C2-type (immunoglobulin-like) domains

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (DCC)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (DCC)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005215

                  Applied Biosystems Silencer® siRNAs for DCC

                  Sigma-Aldrich siRNA and siRNA Panels for DCC  
                         Sigma-Aldrich shRNA Panels and shRNA for DCC  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Browse Clone Ranger at Invitrogen for clones
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005215
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005215
                                     untagged cDNA clone in CMV expression vector: NM_005215 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_005215

    UniProtKB/Swiss-Prot: DCC_HUMAN, P43146
    Function: Receptor for netrin required for axon guidance. Mediates axon attraction of neuronal
    growth cones in the developing nervous system upon ligand binding. Its association with UNC5
    proteins may trigger signaling for axon repulsion. It also acts as a dependence receptor required
    for apoptosis induction when not associated with netrin ligand. Implicated as a tumor suppressor
    gene

    Genatlas biochemistry entry for DCC:
    netrin-1 receptor,expressed on spinal commissural axons and processing netrin-1 binding
    activity,inducing attraction in axon guidance through its cytoplasmic tail,inducing apoptosis in
    the absence of its ligand,homolog of C elegans UNC-40

    7 MGI mutant phenotypes (inferred from 2 alleles(MGI details for Dcc):

    behavior/neurologicallethality-prenatal/perinatalnervous systempigmentationrespiratory system
    tumorigenesisvision/eye

    3 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003713 transcription coactivator activity IEA--
    GO:0005042 netrin receptor activity IEA--
    GO:0005515 protein binding IPI12011067
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    1 Invitrogen iPath™ Online BioAtlas - Pathway for DCC (Maps provided by GeneGo):
     Caspases cascade activation by granzyme and other signaling proteins

       GeneDecks  DCC for the pathways selected above  
    About GeneDecksing

    1 Sigma-Aldrich "Your Favorite Gene" Pathway for  DCC  (Your Favorite Gene powered by Ingenuity) 
     Axonal Guidance Signaling

       GeneDecks  DCC for the pathways selected above  
    About GeneDecksing

    3 Kegg Pathways  (Kegg details for DCC):
     hsa04360 Axon guidance
     hsa05200 Pathways in cancer
     hsa05210 Colorectal cancer

       GeneDecks  DCC for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  DCC 


    5/27 Interacting proteins for DCC (P431461 ENSP000003041463) via UniProtKB, MINT, and/or STRING (see all 27 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    MAZP562701, ENSP000003133623EBI-1222919, EBI-1809742 STRING (score=.917)
    NTN1ENSP000001732293STRING (score=.999)
    PTK2ENSP000003411893STRING (score=.979)
    UNC5BENSP000003343293STRING (score=.964)
    CASP3ENSP000003110323STRING (score=.948)
    About this table

    5/7 Gene Ontology (GO) biological process terms (links to tree view) (see all 7 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0001764 neuron migration IEA--
    GO:0006915 apoptosis IEA--
    GO:0006917 induction of apoptosis TAS9796814
    GO:0007275 multicellular organismal development IEA--
    GO:0007411 axon guidance IEA--
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Browse drugs & compounds from Enzo Life Sciences
    Browse Small Molecules at Sigma-Aldrich

    Browse Tocris compounds for DCC

    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (DCC)
    Browse for Gene Knock-down Tools from Millipore
    Abnova Chimera RNAi Products for Gene knock-down (DCC)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005215

                  Sigma-Aldrich siRNA and siRNA Panels for DCC  
                         Sigma-Aldrich shRNA Panels and shRNA for DCC  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_005215  

    REFSEQ mRNAs for DCC gene: 

    NM_005215.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_005215  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_005215
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_005215
                                     untagged cDNA clone in CMV expression vector: NM_005215 

    Additional cDNA sequence: 

    AK302643.1 AK310385.1 BC036524.1 M32292.1 S81335.1 X76132.1 

    7 DOTS entries:

    DT.309434  DT.91645250  DT.432979  DT.91652132  DT.121087434  DT.75188988  DT.75191285 

    24/27 AceView cDNA sequences (see all 27 ):

    AA904417 AI656183 AL705537 M32292 BX101501 AI990787 BI463685 AI425016 
    AI138281 BX108694 BG771778 BV169651 AL044757 AI677901 AA889035 AI990038 
    AI911162 BI562450 BG193887 AA888969 BG189543 BG208261 AA609059 CO249615 

    highest scoring ESTs for DCC:

    AA907540 AI377843 AW188046 AW873579 X76132 AL044757 AW949550 AW949555 BG771778 BI463685 

    Unigene Cluster for DCC:

    Deleted in colorectal carcinoma
    Hs.579550  [show with all ESTs]
    Unigene Representative Sequence: NM_005215


    GeneLoc Exon Structure

    2 Alternative Splicing Database (ASD) splice patterns (SP) for DCC

    ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21a · 21b ^ 22 ^ 23 ^ 24 ^
    SP1:                                                                                                                                      -                     
    SP2:                                                                                                        -                                                   

    ExUns: 25 ^ 26 ^ 27 ^ 28 ^ 29
    SP1:                              
    SP2:                              

    About this scheme

    ECgene alternative splicing isoforms for DCC

    1 Ensembl transcript including schematic representation:
    ENST00000304775  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    DCC expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for DCC

    1 / 2 / 3

    4 probe-sets matching DCC gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    32890_at2, 3 U95-A 1 0.88 1.00 0.02 0.32 X76132 0.80 1.00 0.91 1

    80344_at*2, 3 U95-E 1 -- -- 1.00 1.00 AI990787 0.20 1.00 0.72 1

    206939_at2, 3 U133-A 1 1.00 1.00 -- -- NM_005215 0.60 1.00 0.82 1

    206939_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    About this table
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GTAACAAAAA

    SOURCE GeneReport for Unigene cluster: Hs.579550

    Expression variation in blood from EXPOLDB for DCC

    UniProtKB/Swiss-Prot: DCC_HUMAN, P43146
    Tissue specificity: Found in axons of the central and peripheral nervous system and in
    differentiated cell types of the intestine

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for DCC gene from 5/10 species (see all 10 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    DCC1   -- deleted in colorectal carcinoma 92.36(n)
    96.65(a)
    483976  XM_541094.2  XP_541094.2 
    chimpanzee
    (Pan troglodytes)
    DCC1   -- deleted in colorectal carcinoma 99.59(n)
    99.86(a)
    455425  XM_512137.2  XP_512137.2 
    cow
    (Bos taurus)
    DCC1   -- deleted in colorectal carcinoma 90.48(n)
    96.38(a)
    537176  XM_617332.3  XP_617332.3 
    rat
    (Rattus norvegicus)
    Dcc1   -- deleted in colorectal carcinoma 89.53(n)
    96.54(a)
    25311  NM_012841.1  NP_036973.1 
    mouse
    (Mus musculus)
    Dcc1, 5 18 (45.00 cM)5
    deleted in colorectal carcinoma1, 5 89.68(n)1
    96.48(a)1
    131761  NM_007831.31  NP_031857.21 
     AK0211255  AK0436575  (see all 13)
    About this table        Species with no ortholog for DCC

    ENSEMBL Gene Tree for DCC
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for DCC gene
    BOC2  CDON2  NEO12  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
    About This Section


    10/8235 NCBI SNPs in DCC are shown (see all 8235 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 2605)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 18 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    rs9343451,2
    A,C,F,H,O48118859(+) TTAAAG/CAGCAT 1 -- ng5116Minor allele frequency- C:0.34EA NA EU WA 1412
    rs22290801,2
    A,C,F,H,O48686600(+) TCAGCC/GGACTC 1 R/G mis1 ese318Minor allele frequency- G:0.45MN EA NA EU WA 1518
    rs9842741,2
    C,F,H,O49190933(-) ATACAT/CAGTAT 1 V/M mis1 ese313Minor allele frequency- C:0.04EU EA WA MN NA 1086
    rs22709541,2
    C,F,H49311296(+) TAGTCC/ATGGGC 1 -- ut3113Minor allele frequency- A:0.26EA EU WA 2756
    rs169547141,2
    C,F,H48118630(+) CAGATC/GTGAGC 1 -- ng5111Minor allele frequency- G:0.09NA EU EA WA 980
    rs99515231,2
    C,F,H48121222(+) CCTTGC/TTCAGC 1 F/L mis1 ese38Minor allele frequency- T:0.01EU EA WA 834
    rs177539701,2
    C,F,H48119269(+) CTCACG/ACCTTT 1 -- ng5111Minor allele frequency- A:0.35NA EU EA WA 974
    rs22783391,2
    F,H49120193(-) CCGATA/CATATA 1 I/M mis14Minor allele frequency- C:0.01EU EA WA 406
    rs169547181,2
    F,H48120267(+) AAACAC/GGGTCG 1 -- ng517Minor allele frequency- G:0.03NA EU EA WA 550
    rs177473211,2
    F,H48120781(+) CATCTC/GCTCTT 1 -- ut517Minor allele frequency- G:0.01NA EU EA WA 562
    About this table

    HapMap Linkage Disequilibrium images for DCC (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 120470

    UniProtKB/Swiss-Prot: DCC_HUMAN, P43146

  • Colorectal tumors that lost their capacity to differentiate into mucus producing cells
    uniformly lack DCC expression. Inactivation of DCC due to allelic deletion and/or point mutations
    may cause both lymphatic and hematogenous metastasis of esophageal squamous cell carcinomas
  • Genatlas disease: DCC
    colorectal carcinoma,deleted in (see TSG18A) in endometrial carcinoma with lymph node
    metastasis,and in pancreatic carcinomas

    Human Gene Mutation Database: DCC
    Genetic Association Database: DCC
    Human Genome Epidemiology Navigator: DCC (11 documents)
    Tumor Gene Database: DCC
    Breast Cancer Gene Database: DCC

    (Possibly Related Articles in Doctor's Guide)
    About This Section

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    10/62 PubMed articles for DCC gene (see all 62 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
    About This Section

    Entrez Gene: 1630 HGNC: 2701 AceView: DCC Ensembl:ENSG00000187323 euGenes: HUgn1630
    ECgene: DCC H-InvDB: DCC
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for DCC Genetics and Cytogenetics in Oncology and Haematology
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



    Products for DCC:
     TaqMan ® Gene Expression Assays
     TaqMan ® Genotyping Assays
      Free SNP selection tool



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     Predesigned and custom siRNAs for DCC Browse antibodies at Sigma-Aldrich
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     Antibodies for DCC

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