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Aliases for DCBLD2 Gene

Aliases for DCBLD2 Gene

  • Discoidin, CUB And LCCL Domain Containing 2 2 3 5
  • Endothelial And Smooth Muscle Cell-Derived Neuropilin-Like Protein 3 4
  • CUB, LCCL And Coagulation Factor V/VIII-Homology Domains Protein 1 3 4
  • CLCP1 3 4
  • ESDN 3 4
  • Coagulation Factor V/VIII-Homology Domains Protein 1 3
  • Discoidin, CUB And LCCL Domain-Containing Protein 2 3
  • 1700055P21Rik 3

External Ids for DCBLD2 Gene

Previous GeneCards Identifiers for DCBLD2 Gene

  • GC03M099836
  • GC03M099997
  • GC03M098514
  • GC03M095886

Summaries for DCBLD2 Gene

GeneCards Summary for DCBLD2 Gene

DCBLD2 (Discoidin, CUB And LCCL Domain Containing 2) is a Protein Coding gene. Diseases associated with DCBLD2 include X-Linked Nonsyndromic Deafness and Diverticulitis. Among its related pathways are Neuroscience. An important paralog of this gene is DCBLD1.

Gene Wiki entry for DCBLD2 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCBLD2 Gene

Genomics for DCBLD2 Gene

Regulatory Elements for DCBLD2 Gene

Enhancers for DCBLD2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F098965 1.3 FANTOM5 Ensembl ENCODE 27.2 -67.9 -67907 7.4 PKNOX1 JUN BHLHE40 CHD1 JUNB SIN3A EP300 ZEB1 JUND POLR2A DCBLD2 PDLIM1P4 ST3GAL6-AS1 GC03M098967 RNU6-1263P
GH03F098776 1.6 FANTOM5 Ensembl ENCODE 18.5 +123.0 123021 4.7 ELF3 ATF1 MLX ARID4B DMAP1 ZSCAN9 RAD21 RARA YY1 CREM ST3GAL6 DCBLD2 ST3GAL6-AS1 CPOX PDLIM1P4 GC03P098755
GH03F098782 1.6 FANTOM5 Ensembl ENCODE 17.7 +116.8 116838 4.9 MLX ARID4B THRB RAD21 RARA YY1 SCRT2 FOS MIXL1 THAP11 ST3GAL6 DCBLD2 ST3GAL6-AS1 CPOX OR5K4 PDLIM1P4 RNU6-26P GC03M098805
GH03F098976 1.2 Ensembl ENCODE 23.3 -80.2 -80173 11.0 INSM2 KLF17 SIN3A RAD21 ZEB1 RARA CBX5 ZNF366 ZNF391 FOS DCBLD2 PDLIM1P4 LOC105374003 GC03M099070
GH03F098890 1.3 Ensembl ENCODE 19.8 +3.9 3924 15.1 HDGF ATF1 PKNOX1 ZNF133 ARID4B SIN3A DMAP1 YY1 FOS ZNF263 DCBLD2 ST3GAL6 CPOX GC03M098805 RNU6-26P
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around DCBLD2 on UCSC Golden Path with GeneCards custom track

Promoters for DCBLD2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001369098 1689 5601 HDGF PKNOX1 ZNF133 ARID4B SIN3A DMAP1 YY1 FOS ZNF263 CEBPZ

Genomic Location for DCBLD2 Gene

Chromosome:
3
Start:
98,795,941 bp from pter
End:
98,901,689 bp from pter
Size:
105,749 bases
Orientation:
Minus strand

Genomic View for DCBLD2 Gene

Genes around DCBLD2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCBLD2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCBLD2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCBLD2 Gene

Proteins for DCBLD2 Gene

  • Protein details for DCBLD2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96PD2-DCBD2_HUMAN
    Recommended name:
    Discoidin, CUB and LCCL domain-containing protein 2
    Protein Accession:
    Q96PD2
    Secondary Accessions:
    • B7WNL1
    • D3DN41
    • Q8N6M4
    • Q8TDX2

    Protein attributes for DCBLD2 Gene

    Size:
    775 amino acids
    Molecular mass:
    85035 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for DCBLD2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DCBLD2 Gene

Post-translational modifications for DCBLD2 Gene

  • Ubiquitination at Lys 586
  • Glycosylation at Asn 95, Asn 155, Asn 272, Asn 474, Thr 490, Asn 516, and Asn 522
  • Modification sites at PhosphoSitePlus

Other Protein References for DCBLD2 Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for DCBLD2 (DCBLD2)
  • Abcam antibodies for DCBLD2

No data available for DME Specific Peptides for DCBLD2 Gene

Domains & Families for DCBLD2 Gene

Suggested Antigen Peptide Sequences for DCBLD2 Gene

Graphical View of Domain Structure for InterPro Entry

Q96PD2

UniProtKB/Swiss-Prot:

DCBD2_HUMAN :
  • Contains 1 CUB domain.
Domain:
  • Contains 1 CUB domain.
  • Contains 1 F5/8 type C domain.
  • Contains 1 LCCL domain.
genes like me logo Genes that share domains with DCBLD2: view

No data available for Gene Families for DCBLD2 Gene

Function for DCBLD2 Gene

Molecular function for DCBLD2 Gene

UniProtKB/Swiss-Prot Induction:
Increased in lung cancers during the process of tumor progression.

Gene Ontology (GO) - Molecular Function for DCBLD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 23770091
genes like me logo Genes that share ontologies with DCBLD2: view
genes like me logo Genes that share phenotypes with DCBLD2: view

Animal Models for DCBLD2 Gene

MGI Knock Outs for DCBLD2:

Animal Model Products

  • Taconic Biosciences Mouse Models for DCBLD2

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for DCBLD2 Gene

Localization for DCBLD2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DCBLD2 Gene

Membrane; Single-pass type I membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for DCBLD2 gene
Compartment Confidence
plasma membrane 5
cytosol 2
golgi apparatus 2
extracellular 1
peroxisome 1
endoplasmic reticulum 1

Gene Ontology (GO) - Cellular Components for DCBLD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane IDA 11447234
GO:0009986 cell surface IDA 11447234
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with DCBLD2: view

Pathways & Interactions for DCBLD2 Gene

SuperPathways for DCBLD2 Gene

SuperPathway Contained pathways
1 Neuroscience
genes like me logo Genes that share pathways with DCBLD2: view

Pathways by source for DCBLD2 Gene

1 Cell Signaling Technology pathway for DCBLD2 Gene

Gene Ontology (GO) - Biological Process for DCBLD2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0030308 negative regulation of cell growth IDA 11447234
GO:0030522 intracellular receptor signaling pathway NAS 11447234
GO:0042060 wound healing IDA 11447234
genes like me logo Genes that share ontologies with DCBLD2: view

No data available for SIGNOR curated interactions for DCBLD2 Gene

Transcripts for DCBLD2 Gene

Unigene Clusters for DCBLD2 Gene

Discoidin, CUB and LCCL domain containing 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DCBLD2 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14a · 14b ^ 15a · 15b ^ 16a · 16b · 16c
SP1: - - -
SP2: - -
SP3:
SP4: -

Relevant External Links for DCBLD2 Gene

GeneLoc Exon Structure for
DCBLD2
ECgene alternative splicing isoforms for
DCBLD2

Expression for DCBLD2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DCBLD2 Gene

Protein differential expression in normal tissues from HIPED for DCBLD2 Gene

This gene is overexpressed in Liver (44.9) and Amniocyte (22.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for DCBLD2 Gene



NURSA nuclear receptor signaling pathways regulating expression of DCBLD2 Gene:

DCBLD2

SOURCE GeneReport for Unigene cluster for DCBLD2 Gene:

Hs.203691

mRNA Expression by UniProt/SwissProt for DCBLD2 Gene:

Q96PD2-DCBD2_HUMAN
Tissue specificity: Highly expressed in testis, heart, skeletal muscle and also in cultured vascular smooth muscle cells.
genes like me logo Genes that share expression patterns with DCBLD2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Protein tissue co-expression partners for DCBLD2 Gene

Orthologs for DCBLD2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for DCBLD2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DCBLD2 34 35
  • 99.61 (n)
dog
(Canis familiaris)
Mammalia DCBLD2 34 35
  • 91.1 (n)
cow
(Bos Taurus)
Mammalia DCBLD2 34 35
  • 89.55 (n)
rat
(Rattus norvegicus)
Mammalia Dcbld2 34
  • 85.88 (n)
mouse
(Mus musculus)
Mammalia Dcbld2 34 16 35
  • 85.48 (n)
oppossum
(Monodelphis domestica)
Mammalia DCBLD2 35
  • 83 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 80 (a)
OneToMany
-- 35
  • 71 (a)
OneToMany
chicken
(Gallus gallus)
Aves DCBLD2 34 35
  • 74.51 (n)
lizard
(Anolis carolinensis)
Reptilia DCBLD2 35
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dcbld2 34
  • 69.15 (n)
zebrafish
(Danio rerio)
Actinopterygii dcbld2 35
  • 56 (a)
OneToOne
Species where no ortholog for DCBLD2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DCBLD2 Gene

ENSEMBL:
Gene Tree for DCBLD2 (if available)
TreeFam:
Gene Tree for DCBLD2 (if available)

Paralogs for DCBLD2 Gene

Paralogs for DCBLD2 Gene

(6) SIMAP similar genes for DCBLD2 Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with DCBLD2: view

Variants for DCBLD2 Gene

Sequence variations from dbSNP and Humsavar for DCBLD2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs10084679 -- 98,815,368(+) aactg(A/C)aggct intron-variant
rs1036674 -- 98,887,260(-) CAGAT(A/G)TATTA intron-variant
rs10428160 -- 98,828,524(+) cactc(A/G)ctagg intron-variant
rs10433438 -- 98,889,435(+) AAATA(C/G)GGTAA intron-variant
rs10530611 -- 98,844,343(+) AGCAT(-/TTA/TTATTA/TTATTATTA/TTATTATTATTA/TTATTATTATTATTA)TTATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for DCBLD2 Gene

Variant ID Type Subtype PubMed ID
nsv591065 CNV gain 21841781
nsv509842 OTHER sequence alteration 20534489
nsv1136755 CNV deletion 24896259
esv2606873 CNV deletion 19546169

Variation tolerance for DCBLD2 Gene

Residual Variation Intolerance Score: 82% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.62; 65.47% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for DCBLD2 Gene

Human Gene Mutation Database (HGMD)
DCBLD2
SNPedia medical, phenotypic, and genealogical associations of SNPs for
DCBLD2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DCBLD2 Gene

Disorders for DCBLD2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for DCBLD2 Gene - From: DISEASES

Disorder Aliases PubMed IDs
x-linked nonsyndromic deafness
  • x-linked deafness
diverticulitis
  • diverticulitis nos
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for DCBLD2

Genetic Association Database (GAD)
DCBLD2
Human Genome Epidemiology (HuGE) Navigator
DCBLD2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DCBLD2
genes like me logo Genes that share disorders with DCBLD2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for DCBLD2 Gene

Publications for DCBLD2 Gene

  1. ESDN, a novel neuropilin-like membrane protein cloned from vascular cells with the longest secretory signal sequence among eukaryotes, is up-regulated after vascular injury. (PMID: 11447234) Kobuke K. … Tashiro K. (J. Biol. Chem. 2001) 2 3 4 22 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. Endothelial and smooth muscle-derived neuropilin-like protein regulates platelet-derived growth factor signaling in human vascular smooth muscle cells by modulating receptor ubiquitination. (PMID: 19696027) Guo X. … Sadeghi M.M. (J. Biol. Chem. 2009) 3 22 64
  4. ESDN is a marker of vascular remodeling and regulator of cell proliferation in graft arteriosclerosis. (PMID: 17697260) Sadeghi M.M. … Rodriguez E.R. (Am. J. Transplant. 2007) 3 22 64
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64

Products for DCBLD2 Gene

Sources for DCBLD2 Gene

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