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Aliases for DCAF6 Gene

Aliases for DCAF6 Gene

  • DDB1 And CUL4 Associated Factor 6 2 3 5
  • Androgen Receptor Complex-Associated Protein 3 4
  • IQ Motif And WD Repeat-Containing Protein 1 3 4
  • Nuclear Receptor Interaction Protein 3 4
  • IQ Motif And WD Repeats 1 2 3
  • IQWD1 3 4
  • ARCAP 3 4
  • NRIP 3 4
  • 1200006M05Rik 3
  • MSTP055 3
  • PC326 3

External Ids for DCAF6 Gene

Previous HGNC Symbols for DCAF6 Gene

  • IQWD1

Previous GeneCards Identifiers for DCAF6 Gene

  • GC01P166173
  • GC01P139151

Summaries for DCAF6 Gene

GeneCards Summary for DCAF6 Gene

DCAF6 (DDB1 And CUL4 Associated Factor 6) is a Protein Coding gene. GO annotations related to this gene include ligand-dependent nuclear receptor transcription coactivator activity. An important paralog of this gene is WDTC1.

UniProtKB/Swiss-Prot for DCAF6 Gene

  • Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCAF6 Gene

Genomics for DCAF6 Gene

Regulatory Elements for DCAF6 Gene

Enhancers for DCAF6 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around DCAF6 on UCSC Golden Path with GeneCards custom track

Promoters for DCAF6 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around DCAF6 on UCSC Golden Path with GeneCards custom track

Genomic Location for DCAF6 Gene

Chromosome:
1
Start:
167,935,783 bp from pter
End:
168,075,843 bp from pter
Size:
140,061 bases
Orientation:
Plus strand

Genomic View for DCAF6 Gene

Genes around DCAF6 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCAF6 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCAF6 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCAF6 Gene

Proteins for DCAF6 Gene

  • Protein details for DCAF6 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q58WW2-DCAF6_HUMAN
    Recommended name:
    DDB1- and CUL4-associated factor 6
    Protein Accession:
    Q58WW2
    Secondary Accessions:
    • A2A295
    • B4DNB8
    • Q7L8I0
    • Q8IXH3
    • Q8TB19

    Protein attributes for DCAF6 Gene

    Size:
    860 amino acids
    Molecular mass:
    96292 Da
    Quaternary structure:
    • Interacts with the nuclear receptors NR3C1 and AR in the presence of ligand. Interacts with DDB1, CUL4A and CUL4B.

    Three dimensional structures from OCA and Proteopedia for DCAF6 Gene

    Alternative splice isoforms for DCAF6 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for DCAF6 Gene

Proteomics data for DCAF6 Gene at MOPED

Post-translational modifications for DCAF6 Gene

  • Ubiquitination at Lys 575 and Lys 694
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for DCAF6 Gene

Domains & Families for DCAF6 Gene

Protein Domains for DCAF6 Gene

Graphical View of Domain Structure for InterPro Entry

Q58WW2

UniProtKB/Swiss-Prot:

DCAF6_HUMAN :
  • Contains 1 IQ domain.
  • Contains 7 WD repeats.
Domain:
  • Contains 1 IQ domain.
Similarity:
  • Contains 7 WD repeats.
genes like me logo Genes that share domains with DCAF6: view

Function for DCAF6 Gene

Molecular function for DCAF6 Gene

UniProtKB/Swiss-Prot Function:
Ligand-dependent coactivator of nuclear receptors. Enhance transcriptional activity of the nuclear receptors NR3C1 and AR. May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex.

Phenotypes for DCAF6 Gene

genes like me logo Genes that share phenotypes with DCAF6: view

Animal Model Products

CRISPR Products

miRNA for DCAF6 Gene

miRTarBase miRNAs that target DCAF6

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for DCAF6 Gene

Localization for DCAF6 Gene

Subcellular locations from UniProtKB/Swiss-Prot for DCAF6 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DCAF6 Gene COMPARTMENTS Subcellular localization image for DCAF6 gene
Compartment Confidence
nucleus 5
cytosol 3
cytoskeleton 1

Gene Ontology (GO) - Cellular Components for DCAF6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005925 focal adhesion IDA --
genes like me logo Genes that share ontologies with DCAF6: view

Pathways & Interactions for DCAF6 Gene

SuperPathways for DCAF6 Gene

No Data Available

UniProtKB/Swiss-Prot Q58WW2-DCAF6_HUMAN

  • Pathway: Protein modification; protein ubiquitination.

Gene Ontology (GO) - Biological Process for DCAF6 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with DCAF6: view

No data available for Pathways by source and SIGNOR curated interactions for DCAF6 Gene

Drugs & Compounds for DCAF6 Gene

No Compound Related Data Available

Transcripts for DCAF6 Gene

Unigene Clusters for DCAF6 Gene

DDB1 and CUL4 associated factor 6:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DCAF6 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10a · 10b · 10c ^ 11 ^ 12a · 12b ^ 13 ^ 14 ^ 15 ^ 16 ^ 17a · 17b · 17c ^ 18 ^ 19 ^
SP1: - - - - - - -
SP2: - - - - - -
SP3:
SP4: - - - -
SP5: - -
SP6: - -
SP7: - -
SP8: -
SP9:
SP10: - - -
SP11: - -
SP12: -
SP13:
SP14: - - - - - - -
SP15: - - - - - -
SP16: - - - - -
SP17: -
SP18:
SP19:
SP20:
SP21:

ExUns: 20a · 20b · 20c ^ 21a · 21b ^ 22a · 22b · 22c ^ 23a · 23b ^ 24a · 24b · 24c · 24d ^ 25 ^ 26a · 26b ^ 27 ^ 28 ^ 29a · 29b ^ 30a · 30b · 30c
SP1: - - - - - - -
SP2:
SP3: - - -
SP4:
SP5: - - - - - -
SP6: -
SP7: - -
SP8: - -
SP9: - -
SP10:
SP11:
SP12:
SP13:
SP14:
SP15:
SP16:
SP17: -
SP18:
SP19:
SP20: -
SP21:

Relevant External Links for DCAF6 Gene

GeneLoc Exon Structure for
DCAF6
ECgene alternative splicing isoforms for
DCAF6

Expression for DCAF6 Gene

mRNA expression in normal human tissues for DCAF6 Gene

mRNA differential expression in normal tissues according to GTEx for DCAF6 Gene

This gene is overexpressed in Muscle - Skeletal (x11.6).

Protein differential expression in normal tissues from HIPED for DCAF6 Gene

This gene is overexpressed in Testis (38.9), Ovary (11.5), and Heart (10.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for DCAF6 Gene



SOURCE GeneReport for Unigene cluster for DCAF6 Gene Hs.435741

mRNA Expression by UniProt/SwissProt for DCAF6 Gene

Q58WW2-DCAF6_HUMAN
Tissue specificity: Highly expressed in skeletal muscle and testis. Expressed to a lesser degree in heart, prostate, and adrenal gland.
genes like me logo Genes that share expression patterns with DCAF6: view

Protein tissue co-expression partners for DCAF6 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for DCAF6 Gene

Orthologs for DCAF6 Gene

This gene was present in the common ancestor of animals.

Orthologs for DCAF6 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia DCAF6 35
  • 91.33 (n)
  • 91.11 (a)
IQWD1 36
  • 94 (a)
OneToOne
dog
(Canis familiaris)
Mammalia DCAF6 35
  • 91.92 (n)
  • 92.52 (a)
DCAF6 36
  • 94 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Dcaf6 35
  • 88.59 (n)
  • 89.37 (a)
Dcaf6 16
Dcaf6 36
  • 87 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia DCAF6 35
  • 99.65 (n)
  • 99.68 (a)
DCAF6 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Dcaf6 35
  • 88.48 (n)
  • 90.09 (a)
oppossum
(Monodelphis domestica)
Mammalia DCAF6 36
  • 86 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia DCAF6 36
  • 72 (a)
OneToOne
chicken
(Gallus gallus)
Aves DCAF6 35
  • 77.9 (n)
  • 81.68 (a)
DCAF6 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia DCAF6 36
  • 76 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia dcaf6 35
  • 71.95 (n)
  • 78.72 (a)
Str.11007 35
zebrafish
(Danio rerio)
Actinopterygii dcaf6 35
  • 63.18 (n)
  • 67.69 (a)
dcaf6 36
  • 61 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP000981 35
  • 50.39 (n)
  • 49.68 (a)
Species with no ortholog for DCAF6:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for DCAF6 Gene

ENSEMBL:
Gene Tree for DCAF6 (if available)
TreeFam:
Gene Tree for DCAF6 (if available)

Paralogs for DCAF6 Gene

Paralogs for DCAF6 Gene

(1) SIMAP similar genes for DCAF6 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for DCAF6 Gene

genes like me logo Genes that share paralogs with DCAF6: view

Variants for DCAF6 Gene

Sequence variations from dbSNP and Humsavar for DCAF6 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs11558511 - 168,044,612(+) GGATG(C/T)GACAA nc-transcript-variant, reference, missense
rs10044 -- 168,075,501(-) GTAAA(A/G)AAAAA utr-variant-3-prime
rs10693 -- 168,056,108(-) GAAAG(C/T)GTGAA intron-variant
rs149912 -- 167,988,565(-) GCTCT(A/T)AATAA intron-variant
rs169309 -- 168,064,031(-) AGGGG(A/G)AAAAA intron-variant, downstream-variant-500B

Structural Variations from Database of Genomic Variants (DGV) for DCAF6 Gene

Variant ID Type Subtype PubMed ID
esv32660 CNV Loss 17666407
nsv872525 CNV Gain 21882294
esv2497978 CNV Deletion 19546169
esv2312150 CNV Deletion 18987734
esv8761 CNV Loss 19470904
esv2672177 CNV Deletion 23128226
esv996972 CNV Deletion 20482838
esv1732326 CNV Deletion 17803354
esv2719228 CNV Deletion 23290073

Variation tolerance for DCAF6 Gene

Residual Variation Intolerance Score: 19% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 6.97; 79.92% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for DCAF6 Gene

Disorders for DCAF6 Gene

Relevant External Links for DCAF6

Human Genome Epidemiology (HuGE) Navigator
DCAF6
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DCAF6

No disorders were found for DCAF6 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DCAF6 Gene

Publications for DCAF6 Gene

  1. A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. (PMID: 16949367) Jin J. … Walter J.C. (Mol. Cell 2006) 2 3 4 67
  2. Nuclear receptor interaction protein, a coactivator of androgen receptors (AR), is regulated by AR and Sp1 to feed forward and activate its own gene expression through AR protein stability. (PMID: 17984071) Chen P.H. … Chen S.L. (Nucleic Acids Res. 2008) 3 23
  3. Nuclear Receptor Interaction Protein (NRIP) expression assay using human tissue microarray and immunohistochemistry technology confirming nuclear localization. (PMID: 18673574) Han C.P. … Kok L.F. (J. Exp. Clin. Cancer Res. 2008) 3 23
  4. NRIP, a novel nuclear receptor interaction protein, enhances the transcriptional activity of nuclear receptors. (PMID: 15784617) Tsai T.C. … Chen S.L. (J. Biol. Chem. 2005) 3 23
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3

Products for DCAF6 Gene

Sources for DCAF6 Gene

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