DCAF4 Gene
protein-coding GIFtS: 43
GCID: GC14P073393
|
|
DDB1 and CUL4 associated factor 4(Previous names: WD repeat domain 21, WD repeat domain 21A )
(Previous symbols: WDR21, WDR21A)
| |
Aliases
for DCAF4 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| DDB1 And CUL4 Associated Factor 41 2 | | WD Repeat-Containing Protein 21A2 3 | | WDR211 2 3 | | DKFZp434K1141 | | WDR21A1 2 3 | | WD Repeat Domain 211 | | WD Repeat Domain 21A1 2 | | DDB1- And CUL4-Associated Factor 42 |
Export aliases for DCAF4 gene to outside databasesPrevious GC identifers: GC14P072464 GC14P053559 |
Summaries
for DCAF4 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for DCAF4:
This gene encodes a WD repeat-containing protein that interacts with the Cul4-Ddb1 E3 ligase macromolecular complex.Multiple alternatively spliced transcript variants have been found for this gene. (provided by RefSeq, Jul 2009)
UniProtKB/Swiss-Prot: DCAF4_HUMAN, Q8WV16Function: May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex
|
Genomic Views
for DCAF4 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000014.8 NC_018925.1 NT_026437.12
Regulatory elements:
 Search SABiosciences Regulatory transcription factor binding sites for DCAF4
Other transcription factors
Search SABiosciences Chromatin IP Primers for DCAF4
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCAF4 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 14q24.3 Ensembl cytogenetic band: 14q24.2 HGNC cytogenetic band: 14q24.3DCAF4 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 14 GeneLoc Exon Structure GeneLoc location for GC14P073393: view genomic region
(about GC identifiers)
Start:
|
73,393,040 bp from pter |
End:
|
73,426,411 bp from pter |
Size:
|
33,372 bases |
Orientation:
|
plus strand |
|
Proteins
for DCAF4 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: DCAF4_HUMAN, Q8WV16 (See
protein sequence)Recommended Name: DDB1- and CUL4-associated factor 4 Size: 495 amino acids; 55694 Da
Subunit: Interacts with DDB1 and CUL4A
1 PDB 3D structure from  and Proteopedia  for DCAF4:3I8C (3D)
Secondary accessions: B4DUT6 Q86U31 Q8IV10 Q96K22 Q9Y4P5Alternative splicing: 4 isoforms: Q8WV16-1 Q8WV16-2 Q8WV16-3 Q8WV16-4 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for DCAF4: NX_Q8WV16
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q8WV16
DCAF4 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins (5 alternative transcripts):
NP_001156980.1 NP_001156981.1 NP_056419.2 NP_851937.1 NP_851938.2
ENSEMBL proteins: ENSP00000351147 ENSP00000345176 ENSP00000422270 ENSP00000377781 ENSP00000426178 ENSP00000452131 ENSP00000451186
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0080008 | Cul4-RING ubiquitin ligase complex |
IDA | 16949367 |
DCAF4 for ontologies About GeneDecksing
DCAF4 Antibody Products:
Assay Products for DCAF4: |
Protein
Domains /
Families
for DCAF4 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
DCAF4 for domains About GeneDecksing
3 InterPro domains/families:Graphical View of Domain Structure for InterPro Entry Q8WV16ProtoNet protein and cluster: Q8WV16 UniProtKB/Swiss-Prot: DCAF4_HUMAN, Q8WV16Similarity: Contains 2 WD repeats |
Function
for DCAF4 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: DCAF4_HUMAN, Q8WV16Function: May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex
Clone
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCAF4 |
|
Pathways & Interactions
for DCAF4 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
UniProtKB/Swiss-Prot: DCAF4_HUMAN, Q8WV16Pathway: Protein modification; protein ubiquitinationInteractions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DCAF4
STRING Interaction
Network Preview (showing 5 interactants - click image to see 24)
5/24 Interacting proteins for DCAF4 (Q8WV163 ENSP000003511474) via UniProtKB, MINT, STRING, and/or I2D (see all 24) About this table
Gene Ontology (GO): 1 biological process term (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0016567 | protein ubiquitination |
IEA | -- |
DCAF4 for ontologies About GeneDecksing
|
Drugs & Compounds
for DCAF4 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for DCAF4
Search CenterWatch for drugs/clinical trials and news about DCAF4
|
Transcripts
for DCAF4 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for DCAF4 gene (5 alternative transcripts): NM_001163508.1 NM_001163509.1 NM_015604.3 NM_181340.2 NM_181341.2 Unigene Cluster for DCAF4: DDB1 and CUL4 associated factor 4 Hs.331491 [show with all ESTs]Unigene Representative Sequence: AL08015715 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000358377 ENST00000353777(uc001xni.3) ENST00000509320 ENST00000394234(uc001xnh.3)
ENST00000509153 ENST00000555042(uc010ttr.2 uc001xnj.3 uc001xng.3 uc010tts.2 uc010ttt.2)
ENST00000514191 ENST00000505361 ENST00000510612 ENST00000508412 ENST00000514486
ENST00000553457(uc001xnk.3) ENST00000513337 ENST00000557203 ENST00000555992
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for DCAF4 (see all 6)
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector (see all 5): DCAF4 (NM_015604) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for DCAF4 | | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCAF4 |
Additional cDNA sequence: AK027745.1 AK297571.1 AK297742.1 AK300786.1 AK315499.1 AL080157.1 BC018979.2 BC035901.1 BX161489.1 BX247962.1 11 DOTS entries: DT.412533 DT.97842484 DT.100791060 DT.100791058 DT.100791056 DT.100791062 DT.120755476 DT.65286008 DT.86859093 DT.91841531 DT.40302320 24/119 AceView cDNA sequences (see all 119): AW438829 BP351303 AW167878 BM141687 AW250072 NM_015604 AI038805 C02546 BI915515 BM988680 BM468150 BC035901 NM_181340 NM_181341 BX247962 AI797602 BM824382 Z41584 BF197939 BM973774 BM761316 BI963764 BM811013 BX161489
GeneLoc Exon Structure
5/7 Alternative Splicing Database (ASD) splice patterns (SP) for DCAF4 (see all 7) About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4 | ^ | 5 | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17a | · | 17b | ^ | 18 |
|---|
|
| SP1: | | | | | | | | | | | | | - | | - | | | | | | | | | | | | - | | | | | | | | | | | | | | |
| SP2: | | | | | - | | | | | | | | - | | - | | | | | | | | | | | | - | | | | | | | | | | | | | | |
| SP3: | | | | | | | | | | | | | | | | | | | | | | | | | | | - | | | | | | | | | | | | | | |
| SP4: | | | | | | | | | | | - | | - | | - | | - | | | | | | - | | - | | - | | - | | - | | | | | | | | | | |
| SP5: | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for DCAF4
|
Expression
for DCAF4 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| DCAF4 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: CCTTTGTTCA
About this image
See DCAF4 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for DCAF4
SOURCE GeneReport for Unigene cluster: Hs.331491
SABiosciences Custom PCR Arrays for DCAF4
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for DCAF4
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Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCAF4 |
Orthologs
for DCAF4 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of eukaryotes.
Orthologs for DCAF4 gene from 5/16 species (see all 16) About this table
| Organism |
Taxonomic
classification |
Gene |
Description |
Human
Similarity |
Orthology
Type |
Details |
chicken
(Gallus gallus) |
Aves |
DCAF41 |
DDB1 and CUL4 associated factor 4 |
67.28(n)
67.28(a) |
|
423253 XM_421173.3 XP_421173.3 |
lizard
(Anolis carolinensis) |
Reptilia |
-- |
-- |
61(a) |
1 → many |
1(38838975-38849503) |
zebrafish
(Danio rerio) |
Actinopterygii |
wdr212 |
WD repeat domain 21 |
73.66(n) |
|
393674 AY423032.1 |
thale cress
(Arabidopsis thaliana) |
eudicotyledons |
AT5G173706 |
transducin/WD40 domain-containing protein |
18(a) |
1 → many |
5(5721636-5724719) |
rice
(Oryza sativa) |
Liliopsida |
-- |
WD-40 repeat family protein, putative, expressed |
19(a) |
1 → many |
7(431084-436658) |
ENSEMBL Gene Tree for DCAF4 (if available)
TreeFam Gene Tree for DCAF4 (if available) |
Paralogs
for DCAF4 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| Paralogs for DCAF4 gene
- DCAF4L12 DCAF4L22
2 SIMAP similar genes for DCAF4 using alignment to 5 protein entries: DCAF4_HUMAN (see all proteins):DCAF4L1 DCAF4L2
DCAF4 for paralogs About GeneDecksing
|
Genomic Variants
for DCAF4 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 14 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for DCAF4 (73393040 - 73426411 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV) variations for DCAF4: --
Human Gene Mutation Database (HGMD): DCAF4
| SABiosciences Cancer Mutation PCR Assays |
|
Disorders
/ Diseases
for DCAF4 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
 DCAF4 for disorders About MalaCards
DCAF4 for disorders About GeneDecksing
Export disorders for DCAF4 gene to outside databases
|
Publications
for DCAF4 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for DCAF4 gene, integrated from 9 sources (see all 16):
(articles sorted by number of sources associating them with DCAF4) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. (PubMed id 16949367)1, 2 Jin J.... Walter J.C. (2006)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
- Association between WDR21A polymorphisms and airway re sponsiveness to inhaled corticosteroids in asthmatic patients. (PubMed id 22366774)1 Cho S.H....Park C.S. (2012)
- Systematic and quantitative assessment of the ubiquiti n-modified proteome. (PubMed id 21906983)1 Kim W....Gygi S.P. (2011)
- Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
- A proteome-wide, quantitative survey of in vivo ubiqui tylation sites reveals widespread regulatory roles. (PubMed id 21890473)1 Wagner S.A....Choudhary C. (2011)
- Systematic analysis of human protein complexes identi fies chromosome segregation proteins. (PubMed id 20360068)1 Hutchins J.R....Peters J.M. (2010)
- Dynamics of cullin-RING ubiquitin ligase network revea led by systematic quantitative proteomics. (PubMed id 21145461)1 Bennett E.J....Harper J.W. (2010)
|
External Searches for DCAF4 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing DCAF4 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing DCAF4 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing DCAF4 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for DCAF4 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for DCAF4 gene:
Search GeneIP for patents involving DCAF4
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for DCAF4 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat DCAF4 | | | Search QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing DCAF4 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCAF4 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat DCAF4 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat DCAF4 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat DCAF4 |
| |
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| |  |  |  |  | | | | |
 |
 |
 |
 | | | DCAF4 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCAF4 |
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| | | Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCAF4 |
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|
