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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

DCAF16 Gene

protein-coding   GIFtS: 41
GCID: GC04M017802

DDB1 And CUL4 Associated Factor 16

(Previous name: chromosome 4 open reading frame 30)
(Previous symbol: C4orf30)
  Search for DCAF16
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
DDB1 And CUL4 Associated Factor 161 2
C4orf301 2 3
Chromosome 4 Open Reading Frame 301
DDB1- And CUL4-Associated Factor 162

External Ids:    HGNC: 259871   Entrez Gene: 548762   Ensembl: ENSG000001632577   UniProtKB: Q9NXF73   

Export aliases for DCAF16 gene to outside databases

Previous GC identifers: GC04M017412 GC04M017157


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for DCAF16 Gene: 
DCAF16 (DDB1 and CUL4 associated factor 16) is a protein-coding gene. GO annotations related to this gene include protein binding.

UniProtKB/Swiss-Prot: DCA16_HUMAN, Q9NXF7
Function: May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000004.11  NT_006316.16  NC_018915.2  
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for DCAF16
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidDCAF16 promoter sequence
   Search SABiosciences Chromatin IP Primers for DCAF16

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat DCAF16


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p15.31   Ensembl cytogenetic band:  4p15.31   HGNC cytogenetic band: 4p15.32

DCAF16 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DCAF16 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M017802:  view genomic region     (about GC identifiers)

Start:
17,802,278 bp from pter      End:
17,812,381 bp from pter
Size:
10,104 bases      Orientation:
minus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: DCA16_HUMAN, Q9NXF7 (See protein sequence)
Recommended Name: DDB1- and CUL4-associated factor 16  
Size: 216 amino acids; 24193 Da
Subunit: Interacts with DDB1 and CUL4A

Explore the universe of human proteins at neXtProt for DCAF16: NX_Q9NXF7

Explore proteomics data for DCAF16 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q9NXF7

  • DCAF16 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    DCAF16 Protein Expression
    REFSEQ proteins: NP_060211.3  
    ENSEMBL proteins: 
     ENSP00000371682   ENSP00000445736  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0080008Cul4-RING ubiquitin ligase complex IDA16949367

    DCAF16 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    HGNC Gene Families: 
    DCAF: DDB1 and CUL4 associated factors

    ProtoNet protein and cluster: Q9NXF7


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DCA16_HUMAN, Q9NXF7
    Function: May function as a substrate receptor for CUL4-DDB1 E3 ubiquitin-protein ligase complex

         Gene Ontology (GO): 1 molecular function term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005515protein binding IPI--
         
    DCAF16 for ontologies           About GeneDecksing


    Phenotypes:
         2 GenomeRNAi human phenotypes for DCAF16:
     Increased G1 DNA content  Increased gamma-H2AX phosphory 

    Animal Models:
       inGenious Targeting Laboratory - Custom generated mouse model solutions for DCAF16 
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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    UniProtKB/Swiss-Prot: DCA16_HUMAN, Q9NXF7
    Pathway: Protein modification; protein ubiquitination

    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for DCAF16

    STRING Interaction Network Preview (showing 5 interactants - click image to see 20)

    5/22 Interacting proteins for DCAF16 (Q9NXF71, 3 ENSP000003716824) via UniProtKB, MINT, STRING, and/or I2D (see all 22)

    InteractantInteraction Details
    GeneCardExternal ID(s)
    CUL4AQ136193, ENSP000003645894I2D: score=1 STRING: ENSP00000364589
    DDB1Q165313, ENSP000003017644I2D: score=1 STRING: ENSP00000301764
    DDA1Q9BW613I2D: score=1 
    CRBNENSP000002319484STRING: ENSP00000231948
    CUL4BENSP000003841094STRING: ENSP00000384109
    About this table

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016567protein ubiquitination IEA--

    DCAF16 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for DCAF16 (DCA16)

    Search CenterWatch for drugs/clinical trials and news about DCAF16 / DCA16

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Sirion Biotech, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for DCAF16 gene: 
    NM_017741.3  

    Unigene Cluster for DCAF16:

    DDB1 and CUL4 associated factor 16
    Hs.614787  [show with all ESTs]
    Unigene Representative Sequence: NM_017741
    4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000382247(uc003gpn.3) ENST00000507768 ENST00000507731 ENST00000536863

    miRNA
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    8/32 QIAGEN miScript miRNA Assays for microRNAs that regulate DCAF16 (see all 32):
    hsa-miR-2052 hsa-miR-3910 hsa-miR-520d-5p hsa-miR-181c hsa-miR-2110 hsa-miR-124 hsa-miR-320e hsa-miR-1323
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    Inhib. RNA
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    Additional mRNA sequence: 

    AK000287.1 AK056116.1 BC014536.1 BC050697.1 BC068025.1 BC101716.1 BC101718.1 

    16 DOTS entries:

    DT.95263485  DT.439477  DT.100775274  DT.121231949  DT.121643961  DT.411980  DT.65285185  DT.100660658 
    DT.100724766  DT.97763789  DT.100835789  DT.121231897  DT.40312017  DT.86839231  DT.405579  DT.95263484 

    24/119 AceView cDNA sequences (see all 119):

    AA347761 AW268157 BF475710 BC050697 BX473060 AI890343 BM834212 AK000287 
    BE645684 BX117617 BF224074 BU192544 AW294072 CA443415 BQ438880 BQ574204 
    BU157289 AW295611 BF446389 AW304014 BX954458 BG709201 BX642702 AW263487 

    GeneLoc Exon Structure

    5/7 Alternative Splicing Database (ASD) splice patterns (SP) for DCAF16 (see all 7)    About this scheme

    ExUns: 1a · 1b · 1c · 1d ^ 2a · 2b ^ 3 ^ 4a · 4b · 4c · 4d · 4e · 4f
    SP1:                                -                                             
    SP2:                          -     -                                             
    SP3:                          -     -           -                                 
    SP4:                                -     -     -                                 
    SP5:                          -     -     -                                       


    ECgene alternative splicing isoforms for DCAF16

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    DCAF16 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: AATGCATTTT
    DCAF16 Expression
    About this image


    See DCAF16 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for DCAF16

    SOURCE GeneReport for Unigene cluster: Hs.614787
        SABiosciences Custom PCR Arrays for DCAF16
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    In Situ
    Assay Products:
     

     
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    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of mammals.

    Orthologs for DCAF16 gene from 1/3 species (see all 3)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    dog
    (Canis familiaris)
    Mammalia LOC1008564921 DDB1- and CUL4-associated factor 16-like 92.28(n)
    94.44(a)
      100856492  XM_003638979.1  XP_003639027.1 


    ENSEMBL Gene Tree for DCAF16 (if available)
    TreeFam Gene Tree for DCAF16 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
      --

    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/190 SNPs in DCAF16 are shown (see all 190)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 4 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1917758731,2
    --17801880(+) ATAAAC/TAGAGG 1 -- ds50010--------
    rs1839845251,2
    --17801957(+) AGGTAA/GTAAAT 1 -- ds50010--------
    rs119308261,2
    C,F,H--17802023(+) GGTACC/GTGTTA 1 -- ds50017Minor allele frequency- G:0.01NS EA NA WA 630
    rs358121511,2
    C--17802105(+) ACATT-/TTCTTCTT 1 -- ds50010--------
    rs1887170281,2
    --17802166(+) ACTATA/GTAGAT 1 -- ds50010--------
    rs1495061361,2
    C--17802346(+) GTGAAC/TAGCAA 1 -- ut310--------
    rs789996471,2
    C--17802388(+) ACACAC/TAGAGA 1 -- ut313Minor allele frequency- T:0.10NA WA EA 240
    rs1807484581,2
    --17802389(+) CACACA/GGAGAG 1 -- ut310--------
    rs1844484701,2
    --17802390(+) ACACAC/GAGAGA 1 -- ut310--------
    rs1501835191,2
    C--17802489(+) CAAAC-/AAAAAA 1 -- ut310--------

    HapMap Linkage Disequilibrium report for DCAF16 (17802278 - 17812381 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 2 variations for DCAF16:    About this table     
    Variant IDTypeSubtypePubMed ID
    esv2645526CNV Deletion19546169
    nsv878721CNV Loss21882294

    SABiosciences Cancer Mutation PCR Assays
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    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for DCAF16 gene, integrated from 9 sources (see all 18):
    (articles sorted by number of sources associating them with DCAF16)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. (PubMed id 16949367)1, 2 Jin J.... Walter J.C. (2006)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1, 3 Strausberg R.L....Marra M.A. (2002)
    4. Interlaboratory reproducibility of large-scale human p rotein-complex analysis by standardized AP-MS. (PubMed id 23455922)1 Varjosalo M....Superti-Furga G. (2013)
    5. A Y2H-seq approach defines the human protein methyltransferase interactome. (PubMed id 23455924)1 Weimann M.... Stelzl U. (2013)
    6. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    7. Systems-wide analysis of ubiquitylation dynamics reveals a key role for PAF15 ubiquitylation in DNA-damage bypass. (PubMed id 23000965)1 Povlsen L.K....Choudhary C. (2012)
    8. Global landscape of HIV-human protein complexes. (PubMed id 22190034)1 Jager S....Krogan N.J. (2012)
    9. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    10. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 54876 HGNC: 25987 AceView: FLJ20280 Ensembl:ENSG00000163257 euGenes: HUgn54876
    ECgene: DCAF16 H-InvDB: DCAF16

    (According to HUGE)
    About This Section
      --

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for DCAF16 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for DCAF16 gene:
    Search GeneIP for patents involving DCAF16

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 4 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    (GIFtS: 73)
    transforming growth factor, beta 1
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    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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