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DCAF15 Gene

protein-coding   GIFtS: 37
GCID: GC19P014063

DDB1 And CUL4 Associated Factor 15

(Previous name: chromosome 19 open reading frame 72)
(Previous symbol: C19orf72)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
DDB1 And CUL4 Associated Factor 151 2
C19orf721 2 3
Chromosome 19 Open Reading Frame 721
DDB1- And CUL4-Associated Factor 152

External Ids:    HGNC: 250951   Entrez Gene: 903792   Ensembl: ENSG000001320177   UniProtKB: Q66K643   

Export aliases for DCAF15 gene to outside databases

Previous GC identifers: GC19P013927 GC19P013634


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for DCAF15 Gene:
DCAF15 (DDB1 and CUL4 associated factor 15) is a protein-coding gene.

UniProtKB/Swiss-Prot: DCA15_HUMAN, Q66K64
Function: May be involved in ubiquitination and degradation through a DBB1-CUL4 E3 protein-ubiquitin ligase




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000019.9  NC_018930.2  NT_011295.12  
Regulatory elements:
   Search for regulatory transcription factor binding sites for DCAF15
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for DCAF15

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat DCAF15


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19p13.12   Ensembl cytogenetic band:  19p13.12   HGNC cytogenetic band: 19p13.12

DCAF15 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
DCAF15 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19P014063:  view genomic region     (about GC identifiers)

Start:
14,063,304 bp from pter      End:
14,072,256 bp from pter
Size:
8,953 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: DCA15_HUMAN, Q66K64 (See protein sequence)
Recommended Name: DDB1- and CUL4-associated factor 15  
Size: 600 amino acids; 66463 Da
Subunit: Interacts with DDB1 and CUL4A
Sequence caution: Sequence=AAH13280.2; Type=Frameshift; Positions=89;
Secondary accessions: B3KS86 Q96DW0 Q9BU31

Explore the universe of human proteins at neXtProt for DCAF15: NX_Q66K64

Explore proteomics data for DCAF15 at MOPED

Post-translational modifications: 

  • Modification sites at neXtProt
  • Modification sites at PhosphoSitePlus

  • See DCAF15 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins: NP_612362.2  
    ENSEMBL proteins: 
     ENSP00000254337   ENSP00000466932   ENSP00000466048   ENSP00000468330  

    DCAF15 Human Recombinant Protein Products:

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    OriGene Protein Over-expression Lysate for DCAF15
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    Browse Sino Biological Cell Lysates
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    Cloud-Clone Corp. Proteins for DCAF15

     
    Search eBioscience for Proteins for DCAF15 

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    DCAF15 Assay Products:

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    Cloud-Clone Corp. CLIAs for DCAF15
    Search eBioscience for ELISAs for DCAF15 


    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    HGNC Gene Families:
    DCAF: DDB1 and CUL4 associated factors

    ProtoNet protein and cluster: Q66K64


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Molecular Function:

         UniProtKB/Swiss-Prot Summary: DCA15_HUMAN, Q66K64
    Function: May be involved in ubiquitination and degradation through a DBB1-CUL4 E3 protein-ubiquitin ligase

    Animal Models:

       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for DCAF15
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       genOway customized Knockin model: humanization, point mutation, expression monitoring, etc. for DCAF15

    miRNA
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    Block miRNA regulation of human, mouse, rat DCAF15 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate DCAF15 (see all 17):
    hsa-let-7d hsa-miR-486-3p hsa-let-7c hsa-let-7g hsa-let-7a hsa-miR-3121-3p hsa-miR-4309 hsa-miR-98
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
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    Predesigned siRNA for gene silencing in human, mouse, rat DCAF15

    Gene Editing
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    Clone
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    OriGene ORF clones in mouse, rat for DCAF15
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: DCAF15 (NM_138353)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for DCAF15
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCAF15

    Cell Line
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    In Situ Assay
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    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCAF15


    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Subcellular locations from COMPARTMENTS: 

    CompartmentConfidence
    cytosol2
    nucleus2
    peroxisome2

    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    UniProtKB/Swiss-Prot: DCA15_HUMAN, Q66K64
    Pathway: Protein modification; protein ubiquitination

        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for DCAF15
    Interactions:

        Search GeneGlobe Interaction Network for DCAF15

    STRING Interaction Network Preview (showing 3 interactants - click image to see more details)

    3 Interacting proteins for DCAF15 (Q66K643 ENSP000002543374) via UniProtKB, MINT, STRING, and/or I2D

    InteractantInteraction Details
    GeneCardExternal ID(s)
    CUL4AQ136193, ENSP000003645894I2D: score=1 STRING: ENSP00000364589
    DDB1Q165313, ENSP000003017644I2D: score=1 STRING: ENSP00000301764
    DRG2ENSP000002257294STRING: ENSP00000225729
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0016567protein ubiquitination IEA--

    Find genes that share ontologies with DCAF15           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for DCAF15 (DCA15)



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for DCAF15 gene: 
    NM_138353.2  

    Unigene Cluster for DCAF15:

    DDB1 and CUL4 associated factor 15
    Hs.443636  [show with all ESTs]
    Unigene Representative Sequence: BC080575
    6 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000254337(uc002mxt.3 uc002mxu.3) ENST00000591802 ENST00000585468
    ENST00000587307 ENST00000588523 ENST00000591385
    miRNA
    Products:
         
    Block miRNA regulation of human, mouse, rat DCAF15 using miScript Target Protectors
    Selected qRT-PCR Assays for microRNAs that regulate DCAF15 (see all 17):
    hsa-let-7d hsa-miR-486-3p hsa-let-7c hsa-let-7g hsa-let-7a hsa-miR-3121-3p hsa-miR-4309 hsa-miR-98
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    OriGene RNAi products in human, mouse, rat for DCAF15
    Predesigned siRNA for gene silencing in human, mouse, rat DCAF15
    Clone
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    OriGene clones in human, mouse for DCAF15 (see all 8)
    OriGene ORF clones in mouse, rat for DCAF15
    OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
    GenScript: all cDNA clones in your preferred vector: DCAF15 (NM_138353)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for DCAF15
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat DCAF15
    Primer
    Products:
        
    OriGene qPCR primer pairs and template standards for DCAF15
    OriGene qSTAR qPCR primer pairs in human, mouse for DCAF15
    Pre-validated RT2 qPCR Primer Assay in human, mouse, rat DCAF15
      QuantiTect SYBR Green Assays in human, mouse, rat DCAF15
      QuantiFast Probe-based Assays in human, mouse, rat DCAF15

    Additional mRNA sequence: 

    AK093072.1 BC002926.2 BC013280.2 BC018894.2 BC018895.2 BC068994.1 BC080575.1 

    11 DOTS entries:

    DT.95280368  DT.121473932  DT.100782445  DT.121473881  DT.444643  DT.425198  DT.95280373  DT.206207 
    DT.86843890  DT.95280375  DT.97763790 

    Selected AceView cDNA sequences (see all 185):

    BQ936770 BF476325 AI536609 BQ277954 AI184147 AA293595 BC013280 AI538558 
    AW206903 AI452710 AI554917 AA971911 CD519407 AA588460 BQ686387 BQ686429 
    BC068994 BM142236 BM824230 AI624846 AA428434 AI660129 AW137385 AA490821 

    GeneLoc Exon Structure

    Selected Alternative Splicing Database (ASD) splice patterns (SP) for DCAF15 (see all 7)    About this scheme

    ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9a · 9b ^ 10a · 10b ^ 11a · 11b ^ 12a · 12b ^ 13a · 13b ^ 14a · 14b · 14c
    SP1:                                                  -     -     -     -     -                       -                                             
    SP2:                                                                                -                 -                                             
    SP3:                                                                                                                                                
    SP4:                                                                                                                                                
    SP5:                                                                                -                 -                                             


    ECgene alternative splicing isoforms for DCAF15

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    DCAF15 expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS <intensity>2/3
    CGAP TAG: TAATAAATGT
    DCAF15 Expression
    About this image

    DCAF15 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    DCAF15 Protein Expression

    SOURCE GeneReport for Unigene cluster: Hs.443636
        Custom PCR Arrays for DCAF15
    Primer
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for DCAF15

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of animals.

    Orthologs for DCAF15 gene from Selected species (see all 12)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Dcaf151 , 5 DDB1 and CUL4 associated factor 151, 5 86.06(n)1
    90.83(a)1
      8 (40.30 cM)5
    2121231  NM_172502.31  NP_766090.21 
     840970725 
    lizard
    (Anolis carolinensis)
    Reptilia DCAF156
    DDB1 and CUL4 associated factor 15
    78(a)
    1 ↔ 1
    2(76943135-76982308)
    African clawed frog
    (Xenopus laevis)
    Amphibia CD361601.12   -- 77.56(n)    CD361601.1 
    zebrafish
    (Danio rerio)
    Actinopterygii 570457192   -- 72.65(n)    57045719 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG63256
    --
    12(a)
    1 ↔ 1
    3R(6228689-6233007)


    ENSEMBL Gene Tree for DCAF15 (if available)
    TreeFam Gene Tree for DCAF15 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for DCAF15 (see all 250)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 19 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs1902632881,2
    --14066297(+) GTTCAA/TCACAC 1 -- int10--------
    rs1930003691,2
    --14066450(+) CTGAAC/TGGGCT 1 -- int10--------
    rs1494148121,2
    --14066507(+) GGGACA/GTTGTT 1 -- int10--------
    rs735155701,2
    C,F--14066677(+) GGGACC/GTCCGC 1 -- int13Minor allele frequency- G:0.15WA 122
    rs735155711,2
    C--14066679(+) GACCTC/TCGCAG 1 -- int11Minor allele frequency- T:0.50WA 2
    rs2003975611,2
    --14066765(+) TACAGC/TGACCT 2 S syn10--------
    rs1997869731,2
    C--14066802(+) GCGACG/ACCTCC 2 /T /A mis11Minor allele frequency- A:0.00EU 1301
    rs1129216641,2
    C,F--14066816(+) GTCATC/TGTCTT 2 I syn13Minor allele frequency- T:0.01CSA WA NA 4666
    rs1116258441,2
    C--14066857(+) AGCCTT/CGGCTG 1 -- int12Minor allele frequency- C:0.07WA 120
    rs1121643701,2
    C,F--14066884(+) TGCAGT/CGGGGG 1 -- int12Minor allele frequency- C:0.11WA 120

    HapMap Linkage Disequilibrium report for DCAF15 (14063304 - 14072256 bp)

    Structural Variations
         Database of Genomic Variants (DGV) 9 variations for DCAF15:    About this table    
    Variant IDTypeSubtypePubMed ID
    nsv820186CNV Loss19587683
    nsv911102CNV Loss21882294
    dgv3742n71CNV Loss21882294
    dgv3738n71CNV Loss21882294
    dgv3741n71CNV Loss21882294
    nsv828451CNV Loss20364138
    nsv911098CNV Loss21882294
    dgv3739n71CNV Loss21882294
    dgv3740n71CNV Loss21882294

    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing DCAF15
    DNA2.0 Custom Variant and Variant Library Synthesis for DCAF15

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for DCAF15 gene integrated from 10 sources:
    (articles sorted by number of sources associating them with DCAF15)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. (PubMed id 16949367)1, 2 Jin J.... Walter J.C. (Mol. Cell 2006)
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (Nat. Genet. 2004)
    3. N-terminal acetylome analyses and functional insights of the N- terminal acetyltransferase NatB. (PubMed id 22814378)2 Van Damme P....Aldabe R. (Proc. Natl. Acad. Sci. U.S.A. 2012)
    4. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    5. Systematic analysis of human protein complexes identifies chromosome segregation proteins. (PubMed id 20360068)1 Hutchins J.R.... Peters J.M. (Science 2010)
    6. An interaction network of the mammalian COP9 signalosome identifies Dda1 as a core subunit of multiple Cul4-based E3 ligases. (PubMed id 19295130)1 Olma M.H....Pintard L. (J. Cell. Sci. 2009)
    7. A quantitative atlas of mitotic phosphorylation. (PubMed id 18669648)2 Dephoure N.... Gygi S.P. (Proc. Natl. Acad. Sci. U.S.A. 2008)
    8. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    9. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 90379 HGNC: 25095 AceView: LOC90379 Ensembl:ENSG00000132017 euGenes: HUgn90379
    ECgene: DCAF15 H-InvDB: DCAF15

    (According to HUGE)
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    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for DCAF15 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
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