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Aliases for DCAF13P3 Gene

Subcategory (RNA class) for DCAF13P3 Gene

lncRNA

Aliases for DCAF13P3 Gene

  • DDB1 And CUL4 Associated Factor 13 Pseudogene 3 2 3 5

External Ids for DCAF13P3 Gene

ORGUL Members for DCAF13P3 Gene

Previous GeneCards Identifiers for DCAF13P3 Gene

  • GC15P051237

Summaries for DCAF13P3 Gene

GeneCards Summary for DCAF13P3 Gene

DCAF13P3 (DDB1 And CUL4 Associated Factor 13 Pseudogene 3) is a Pseudogene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCAF13P3 Gene

Genomics for DCAF13P3 Gene

Regulatory Elements for DCAF13P3 Gene

Enhancers for DCAF13P3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH15F050685 0.7 ENCODE 13.5 -257.5 -257454 2.6 HDGF PKNOX1 CREB3L1 MLX ARID4B SIN3A DMAP1 ZNF2 ZNF143 ZNF207 TRPM7 DCAF13P3 SPPL2A USP8 AP4E1 ENSG00000259715 GC15P050634
GH15F050349 0.2 ENCODE 13.5 -590.9 -590861 8.3 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ARID4B SIN3A FEZF1 DMAP1 GABPB1-AS1 ENSG00000259715 USP8 AHCYP7 ENSG00000259701 DCAF13P3 MIR4712 ENSG00000259298 FGF7 ENSG00000259618
GH15F050676 1.2 Ensembl ENCODE 12 -267.2 -267212 2.1 CTCF HDAC1 KLF1 PKNOX1 ATF1 JUN INSM2 KLF17 ZBTB40 RAD21 MIR4712 ENSG00000259298 ENSG00000259715 DCAF13P3 SPPL2A USP8 ENSG00000259618 TRPM7 GC15P050634
GH15F050906 1.2 ENCODE 10 -34.9 -34851 6.2 PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A DMAP1 YY1 AP4E1 ENSG00000259715 MIR4712 TRPM7 ENSG00000259298 USP8 ENSG00000259618 RPS20P34 DCAF13P3 SPPL2A
GH15F051075 1.6 FANTOM5 Ensembl ENCODE 5.6 +133.1 133113 2.7 TBL1XR1 TEAD4 MAX EBF1 POLR2A EED FOS NFE2 CREM MAFK AP4E1 SPPL2A DCAF13P3 TRPM7 GC15P051080 PIR55928 PIR55486
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around DCAF13P3 on UCSC Golden Path with GeneCards custom track

Genomic Location for DCAF13P3 Gene

Chromosome:
15
Start:
50,944,129 bp from pter
End:
50,946,573 bp from pter
Size:
2,445 bases
Orientation:
Plus strand

Genomic View for DCAF13P3 Gene

Genes around DCAF13P3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
DCAF13P3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for DCAF13P3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCAF13P3 Gene

Proteins for DCAF13P3 Gene

Post-translational modifications for DCAF13P3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for DCAF13P3 Gene

Domains & Families for DCAF13P3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for DCAF13P3 Gene

Function for DCAF13P3 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for DCAF13P3 Gene

Localization for DCAF13P3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for DCAF13P3 Gene

Pathways & Interactions for DCAF13P3 Gene

SuperPathways for DCAF13P3 Gene

No Data Available

Interacting Proteins for DCAF13P3 Gene

Gene Ontology (GO) - Biological Process for DCAF13P3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for DCAF13P3 Gene

Transcripts for DCAF13P3 Gene

mRNA/cDNA for DCAF13P3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DCAF13P3 Gene

DDB1 and CUL4 associated factor 13 pseudogene 3:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for DCAF13P3 Gene

No ASD Table

Relevant External Links for DCAF13P3 Gene

GeneLoc Exon Structure for
DCAF13P3
ECgene alternative splicing isoforms for
DCAF13P3

Expression for DCAF13P3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for DCAF13P3 Gene

NURSA nuclear receptor signaling pathways regulating expression of DCAF13P3 Gene:

DCAF13P3

SOURCE GeneReport for Unigene cluster for DCAF13P3 Gene:

Hs.730493
genes like me logo Genes that share expression patterns with DCAF13P3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for DCAF13P3 Gene

Orthologs for DCAF13P3 Gene

Evolution for DCAF13P3 Gene

ENSEMBL:
Gene Tree for DCAF13P3 (if available)
TreeFam:
Gene Tree for DCAF13P3 (if available)

No data available for Orthologs for DCAF13P3 Gene

Paralogs for DCAF13P3 Gene

No data available for Paralogs for DCAF13P3 Gene

Variants for DCAF13P3 Gene

Sequence variations from dbSNP and Humsavar for DCAF13P3 Gene

SNP ID Clin Chr 15 pos Sequence Context AA Info Type
rs113244470 -- 50,945,959(+) AATTG(C/T)GTCAG intron-variant, nc-transcript-variant
rs115453920 -- 50,944,212(+) CCTCT(A/G)TCAAA intron-variant, nc-transcript-variant
rs11635054 -- 50,945,713(+) TTGCC(C/T)GTGGA intron-variant, nc-transcript-variant
rs116468310 -- 50,946,896(+) CTGTG(C/T)GCTGT intron-variant, downstream-variant-500B
rs137964040 -- 50,943,723(+) CATAG(A/T)TAGTA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DCAF13P3 Gene

Variant ID Type Subtype PubMed ID
dgv4526n54 CNV gain 21841781
nsv1038778 CNV loss 25217958
nsv1047443 CNV gain 25217958
nsv569398 CNV loss 21841781
nsv569403 CNV loss 21841781
nsv569404 CNV loss 21841781

Relevant External Links for DCAF13P3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
DCAF13P3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for DCAF13P3 Gene

Disorders for DCAF13P3 Gene

Relevant External Links for DCAF13P3

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
DCAF13P3

No disorders were found for DCAF13P3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for DCAF13P3 Gene

Publications for DCAF13P3 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64

Products for DCAF13P3 Gene

Sources for DCAF13P3 Gene

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