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Aliases for DCAF12L1 Gene

Aliases for DCAF12L1 Gene

  • DDB1 And CUL4 Associated Factor 12-Like 1 2 3
  • WD Repeat-Containing Protein 40B 3 4
  • WD Repeat Domain 40B 2 3
  • WDR40B 3 4
  • DDB1- And CUL4-Associated Factor 12-Like Protein 1 3
  • KIAA1892L 3

External Ids for DCAF12L1 Gene

Previous HGNC Symbols for DCAF12L1 Gene

  • WDR40B

Previous GeneCards Identifiers for DCAF12L1 Gene

  • GC0XM125512
  • GC0XM125683
  • GC0XM115062

Summaries for DCAF12L1 Gene

Entrez Gene Summary for DCAF12L1 Gene

  • This gene encodes a member of the WD repeat protein family. WD repeats are minimally conserved regions of approximately 40 amino acids typically bracketed by gly-his and trp-asp (GH-WD), which may facilitate formation of heterotrimeric or multiprotein complexes. Members of this family are involved in a variety of cellular processes, including cell cycle progression, signal transduction, apoptosis, and gene regulation. [provided by RefSeq, Jul 2008]

GeneCards Summary for DCAF12L1 Gene

DCAF12L1 (DDB1 And CUL4 Associated Factor 12-Like 1) is a Protein Coding gene. An important paralog of this gene is DCAF12.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for DCAF12L1 Gene

Genomics for DCAF12L1 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for DCAF12L1 Gene

Start:
126,549,383 bp from pter
End:
126,552,859 bp from pter
Size:
3,477 bases
Orientation:
Minus strand

Genomic View for DCAF12L1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for DCAF12L1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for DCAF12L1 Gene

No data available for Regulatory Elements for DCAF12L1 Gene

Proteins for DCAF12L1 Gene

  • Protein details for DCAF12L1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5VU92-DC121_HUMAN
    Recommended name:
    DDB1- and CUL4-associated factor 12-like protein 1
    Protein Accession:
    Q5VU92
    Secondary Accessions:
    • Q8IYK3

    Protein attributes for DCAF12L1 Gene

    Size:
    463 amino acids
    Molecular mass:
    51201 Da
    Quaternary structure:
    No Data Available

neXtProt entry for DCAF12L1 Gene

Proteomics data for DCAF12L1 Gene at MOPED

Post-translational modifications for DCAF12L1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for DCAF12L1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for DCAF12L1 Gene

Domains for DCAF12L1 Gene

Gene Families for DCAF12L1 Gene

HGNC:
  • WDR :WD repeat domain containing

Protein Domains for DCAF12L1 Gene

Suggested Antigen Peptide Sequences for DCAF12L1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5VU92

UniProtKB/Swiss-Prot:

DC121_HUMAN :
  • Q5VU92
Family:
  • Belongs to the WD repeat DCAF12 family.
Similarity:
  • Contains 6 WD repeats.
genes like me logo Genes that share domains with DCAF12L1: view

Function for DCAF12L1 Gene

Gene Ontology (GO) - Molecular Function for DCAF12L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003674 molecular_function ND --
GO:0005515 protein binding --
genes like me logo Genes that share ontologies with DCAF12L1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for DCAF12L1 Gene

Localization for DCAF12L1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for DCAF12L1 Gene COMPARTMENTS Subcellular localization image for DCAF12L1 gene
Compartment Confidence
nucleus 3
cytosol 2

Gene Ontology (GO) - Cellular Components for DCAF12L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005575 cellular_component ND --
genes like me logo Genes that share ontologies with DCAF12L1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for DCAF12L1 Gene

Pathways for DCAF12L1 Gene

SuperPathways for DCAF12L1 Gene

No Data Available

Interacting Proteins for DCAF12L1 Gene

Gene Ontology (GO) - Biological Process for DCAF12L1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
genes like me logo Genes that share ontologies with DCAF12L1: view

No data available for Pathways by source for DCAF12L1 Gene

Transcripts for DCAF12L1 Gene

mRNA/cDNA for DCAF12L1 Gene

(11) Selected AceView cDNA sequences:
(1) Additional mRNA sequences :
(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for DCAF12L1 Gene

DDB1 and CUL4 associated factor 12-like 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for DCAF12L1

Primer Products

  • OriGene qSTAR qPCR primer pairs in human,mouse,rat for DCAF12L1

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for DCAF12L1 Gene

No ASD Table

Relevant External Links for DCAF12L1 Gene

GeneLoc Exon Structure for
DCAF12L1
ECgene alternative splicing isoforms for
DCAF12L1

Expression for DCAF12L1 Gene

mRNA expression in normal human tissues for DCAF12L1 Gene

mRNA differential expression in normal tissues according to GTEx for DCAF12L1 Gene

This gene is overexpressed in Testis (25.1) and Fallopian Tube (5.3).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for DCAF12L1 Gene

SOURCE GeneReport for Unigene cluster for DCAF12L1 Gene Hs.120403

genes like me logo Genes that share expressions with DCAF12L1: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for DCAF12L1 Gene

Orthologs for DCAF12L1 Gene

This gene was present in the common ancestor of animals.

Orthologs for DCAF12L1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia DCAF12L1 35
  • 98.63 (n)
  • 97.09 (a)
DCAF12L1 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia -- 36
  • 77 (a)
ManyToMany
-- 36
  • 74 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Dcaf12l1 36
  • 65 (a)
ManyToMany
Dcaf12l2 36
  • 72 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta CG3313 36
  • 38 (a)
OneToMany
Species with no ortholog for DCAF12L1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for DCAF12L1 Gene

ENSEMBL:
Gene Tree for DCAF12L1 (if available)
TreeFam:
Gene Tree for DCAF12L1 (if available)

Paralogs for DCAF12L1 Gene

Paralogs for DCAF12L1 Gene

Selected SIMAP similar genes for DCAF12L1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with DCAF12L1: view

Variants for DCAF12L1 Gene

Sequence variations from dbSNP and Humsavar for DCAF12L1 Gene

SNP ID Clin Chr 0X pos Sequence Context AA Info Type MAF
rs1133321 -- 126,549,704(-) AAATC(C/G)GAACA utr-variant-3-prime
rs3923877 -- 126,554,036(+) GAGGG(C/T)GTGGG upstream-variant-2KB
rs5976012 -- 126,554,341(+) TGGTA(A/G)TAGTG upstream-variant-2KB
rs6635493 -- 126,549,174(+) aaaaa(A/C)caaaa downstream-variant-500B
rs6635509 -- 126,554,212(+) CCATA(G/T)GTCCT upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for DCAF12L1 Gene

Variant ID Type Subtype PubMed ID
nsv483075 CNV Gain 15286789
nsv7078 CNV Insertion 18451855

Relevant External Links for DCAF12L1 Gene

HapMap Linkage Disequilibrium report
DCAF12L1
Locus Specific Mutation Databases (LSDB)
DCAF12L1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for DCAF12L1 Gene

Disorders for DCAF12L1 Gene

No disorders were found for DCAF12L1 Gene.

No data available for UniProtKB/Swiss-Prot for DCAF12L1 Gene

Publications for DCAF12L1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  2. A family of diverse Cul4-Ddb1-interacting proteins includes Cdt2, which is required for S phase destruction of the replication factor Cdt1. (PMID: 16949367) Jin J. … Walter J.C. (Mol. Cell 2006) 3
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4
  4. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross M.T. … Bentley D.R. (Nature 2005) 4

Products for DCAF12L1 Gene

Sources for DCAF12L1 Gene

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